CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp14A2-B | 417 | G417G | G6342G | syn | ggC | ggT | 1144 | 1124 | 0.982517 | 19288-19290 |
ORF1ab/nsp14A2-B | 417 | G417G | G6342G | syn | ggC | ggA | 1144 | 14 | 0.0122378 | 19288-19290 |
ORF1ab/nsp14A2-B | 417 | G417G | G6342G | syn | ggC | ggG | 1144 | 6 | 0.00524476 | 19288-19290 |
Details of the mutation G417G within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp14A2-B | 417 | G417G | ggC | ggT | 1124 | 1144 | All | 0.000215 |
ORF1ab/nsp14A2-B | 417 | G417G | ggC | ggA | 14 | 1144 | All | 0.000003 |
ORF1ab/nsp14A2-B | 417 | G417G | ggC | ggG | 6 | 1144 | All | 0.000001 |
ORF1ab/nsp14A2-B | 417 | G417G | ggC | ggT | 264 | 266 | B.1.1.7 | 0.000236 |
ORF1ab/nsp14A2-B | 417 | G417G | ggC | ggA | 2 | 266 | B.1.1.7 | 0.000002 |
ORF1ab/nsp14A2-B | 417 | G417G | ggC | ggT | 175 | 175 | B.1.241 | 0.142045 |
ORF1ab/nsp14A2-B | 417 | G417G | ggC | ggT | 119 | 120 | AY.4 | 0.000185 |
ORF1ab/nsp14A2-B | 417 | G417G | ggC | ggA | 1 | 120 | AY.4 | 0.000002 |
ORF1ab/nsp14A2-B | 417 | G417G | ggC | ggT | 113 | 117 | B.1.617.2 | 0.000425 |
ORF1ab/nsp14A2-B | 417 | G417G | ggC | ggG | 2 | 117 | B.1.617.2 | 0.000008 |
ORF1ab/nsp14A2-B | 417 | G417G | ggC | ggA | 2 | 117 | B.1.617.2 | 0.000008 |
ORF1ab/nsp14A2-B | 417 | G417G | ggC | ggT | 64 | 64 | B.1.1.461 | 0.771084 |
ORF1ab/nsp14A2-B | 417 | G417G | ggC | ggT | 57 | 57 | P.1 | 0.000898 |
ORF1ab/nsp14A2-B | 417 | G417G | ggC | ggT | 44 | 44 | B.1.1.374 | 0.104513 |
ORF1ab/nsp14A2-B | 417 | G417G | ggC | ggT | 19 | 20 | AY.43 | 0.000084 |
ORF1ab/nsp14A2-B | 417 | G417G | ggC | ggA | 1 | 20 | AY.43 | 0.000004 |
ORF1ab/nsp14A2-B | 417 | G417G | ggC | ggT | 17 | 19 | B.1 | 0.000156 |
ORF1ab/nsp14A2-B | 417 | G417G | ggC | ggA | 1 | 19 | B.1 | 0.000009 |
ORF1ab/nsp14A2-B | 417 | G417G | ggC | ggG | 1 | 19 | B.1 | 0.000009 |
ORF1ab/nsp14A2-B | 417 | G417G | ggC | ggT | 16 | 16 | B.1.429 | 0.000376 |
ORF1ab/nsp14A2-B | 417 | G417G | ggC | ggT | 14 | 14 | AY.120 | 0.000521 |
ORF1ab/nsp14A2-B | 417 | G417G | ggC | ggT | 13 | 13 | B.1.36.19 | 0.12037 |
ORF1ab/nsp14A2-B | 417 | G417G | ggC | ggT | 12 | 12 | AY.44 | 0.000073 |
ORF1ab/nsp14A2-B | 417 | G417G | ggC | ggT | 12 | 12 | B.1.36.25 | 0.02649 |
ORF1ab/nsp14A2-B | 417 | G417G | ggC | ggT | 6 | 9 | AY.25 | 0.000036 |
ORF1ab/nsp14A2-B | 417 | G417G | ggC | ggA | 3 | 9 | AY.25 | 0.000018 |
ORF1ab/nsp14A2-B | 417 | G417G | ggC | ggT | 9 | 9 | AY.47 | 0.00028 |
ORF1ab/nsp14A2-B | 417 | G417G | ggC | ggT | 9 | 9 | B.1.177 | 0.000119 |
ORF1ab/nsp14A2-B | 417 | G417G | ggC | ggT | 9 | 9 | P.1.14 | 0.00043 |
ORF1ab/nsp14A2-B | 417 | G417G | ggC | ggT | 7 | 7 | AY.118 | 0.000439 |
ORF1ab/nsp14A2-B | 417 | G417G | ggC | ggT | 7 | 7 | B.1.2 | 0.000062 |
ORF1ab/nsp14A2-B | 417 | G417G | ggC | ggT | 7 | 7 | B.1.637 | 0.000512 |
ORF1ab/nsp14A2-B | 417 | G417G | ggC | ggT | 6 | 6 | AY.103 | 0.000037 |
ORF1ab/nsp14A2-B | 417 | G417G | ggC | ggT | 6 | 6 | B.1.1.433 | 0.008547 |
ORF1ab/nsp14A2-B | 417 | G417G | ggC | ggT | 5 | 5 | AY.33 | 0.000334 |
ORF1ab/nsp14A2-B | 417 | G417G | ggC | ggT | 4 | 4 | AY.116 | 0.001147 |
ORF1ab/nsp14A2-B | 417 | G417G | ggC | ggT | 4 | 4 | AY.3 | 0.00004 |
ORF1ab/nsp14A2-B | 417 | G417G | ggC | ggT | 4 | 4 | AY.34 | 0.000388 |
ORF1ab/nsp14A2-B | 417 | G417G | ggC | ggT | 4 | 4 | B.1.177.72 | 0.013559 |
ORF1ab/nsp14A2-B | 417 | G417G | ggC | ggT | 2 | 3 | AY.23 | 0.000139 |
ORF1ab/nsp14A2-B | 417 | G417G | ggC | ggG | 1 | 3 | AY.23 | 0.00007 |
ORF1ab/nsp14A2-B | 417 | G417G | ggC | ggT | 2 | 3 | AY.4.2 | 0.000043 |
ORF1ab/nsp14A2-B | 417 | G417G | ggC | ggA | 1 | 3 | AY.4.2 | 0.000022 |
ORF1ab/nsp14A2-B | 417 | G417G | ggC | ggT | 3 | 3 | AY.68 | 0.000821 |
ORF1ab/nsp14A2-B | 417 | G417G | ggC | ggT | 3 | 3 | AY.9.2 | 0.00011 |
ORF1ab/nsp14A2-B | 417 | G417G | ggC | ggT | 3 | 3 | B.1.1.216 | 0.002671 |
ORF1ab/nsp14A2-B | 417 | G417G | ggC | ggT | 3 | 3 | B.1.1.222 | 0.000612 |
ORF1ab/nsp14A2-B | 417 | G417G | ggC | ggT | 3 | 3 | B.1.160.28 | 0.008772 |
ORF1ab/nsp14A2-B | 417 | G417G | ggC | ggT | 3 | 3 | B.1.351 | 0.000089 |
ORF1ab/nsp14A2-B | 417 | G417G | ggC | ggT | 3 | 3 | B.1.36.18 | 0.001261 |
ORF1ab/nsp14A2-B | 417 | G417G | ggC | ggT | 2 | 3 | B.1.617.1 | 0.000258 |
ORF1ab/nsp14A2-B | 417 | G417G | ggC | ggG | 1 | 3 | B.1.617.1 | 0.000129 |
ORF1ab/nsp14A2-B | 417 | G417G | ggC | ggT | 2 | 2 | AY.26 | 0.000057 |
ORF1ab/nsp14A2-B | 417 | G417G | ggC | ggT | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp14A2-B | 417 | G417G | ggC | ggT | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp14A2-B | 417 | G417G | ggC | ggT | 2 | 2 | AY.75.1 | 0.000361 |
ORF1ab/nsp14A2-B | 417 | G417G | ggC | ggT | 2 | 2 | AY.92 | 0.000575 |
ORF1ab/nsp14A2-B | 417 | G417G | ggC | ggT | 2 | 2 | B.1.1.318 | 0.000604 |
ORF1ab/nsp14A2-B | 417 | G417G | ggC | ggT | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp14A2-B | 417 | G417G | ggC | ggT | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp14A2-B | 417 | G417G | ggC | ggT | 2 | 2 | B.1.177.65 | 0.001331 |
ORF1ab/nsp14A2-B | 417 | G417G | ggC | ggT | 2 | 2 | B.1.221 | 0.000142 |
ORF1ab/nsp14A2-B | 417 | G417G | ggC | ggT | 2 | 2 | B.1.596 | 0.000174 |
ORF1ab/nsp14A2-B | 417 | G417G | ggC | ggG | 1 | 1 | A.2.4 | 0.003367 |
ORF1ab/nsp14A2-B | 417 | G417G | ggC | ggT | 1 | 1 | A.2.5.1 | 0.004808 |
ORF1ab/nsp14A2-B | 417 | G417G | ggC | ggT | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp14A2-B | 417 | G417G | ggC | ggT | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp14A2-B | 417 | G417G | ggC | ggT | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp14A2-B | 417 | G417G | ggC | ggT | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp14A2-B | 417 | G417G | ggC | ggT | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp14A2-B | 417 | G417G | ggC | ggA | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp14A2-B | 417 | G417G | ggC | ggT | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp14A2-B | 417 | G417G | ggC | ggT | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp14A2-B | 417 | G417G | ggC | ggT | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp14A2-B | 417 | G417G | ggC | ggT | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp14A2-B | 417 | G417G | ggC | ggT | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp14A2-B | 417 | G417G | ggC | ggT | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp14A2-B | 417 | G417G | ggC | ggT | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp14A2-B | 417 | G417G | ggC | ggT | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp14A2-B | 417 | G417G | ggC | ggT | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp14A2-B | 417 | G417G | ggC | ggT | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp14A2-B | 417 | G417G | ggC | ggT | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp14A2-B | 417 | G417G | ggC | ggT | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp14A2-B | 417 | G417G | ggC | ggT | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp14A2-B | 417 | G417G | ggC | ggT | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp14A2-B | 417 | G417G | ggC | ggT | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp14A2-B | 417 | G417G | ggC | ggT | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp14A2-B | 417 | G417G | ggC | ggA | 1 | 1 | B | 0.000128 |
ORF1ab/nsp14A2-B | 417 | G417G | ggC | ggT | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp14A2-B | 417 | G417G | ggC | ggT | 1 | 1 | B.1.1.176 | 0.000439 |
ORF1ab/nsp14A2-B | 417 | G417G | ggC | ggT | 1 | 1 | B.1.1.200 | 0.007463 |
ORF1ab/nsp14A2-B | 417 | G417G | ggC | ggT | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp14A2-B | 417 | G417G | ggC | ggT | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp14A2-B | 417 | G417G | ggC | ggT | 1 | 1 | B.1.1.331 | 0.011628 |
ORF1ab/nsp14A2-B | 417 | G417G | ggC | ggT | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp14A2-B | 417 | G417G | ggC | ggT | 1 | 1 | B.1.110.3 | 0.000718 |
ORF1ab/nsp14A2-B | 417 | G417G | ggC | ggT | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp14A2-B | 417 | G417G | ggC | ggT | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp14A2-B | 417 | G417G | ggC | ggT | 1 | 1 | B.1.237 | 0.004975 |
ORF1ab/nsp14A2-B | 417 | G417G | ggC | ggT | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp14A2-B | 417 | G417G | ggC | ggT | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp14A2-B | 417 | G417G | ggC | ggT | 1 | 1 | B.1.351.5 | 0.0006 |
ORF1ab/nsp14A2-B | 417 | G417G | ggC | ggT | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp14A2-B | 417 | G417G | ggC | ggT | 1 | 1 | B.1.391 | 0.001127 |
ORF1ab/nsp14A2-B | 417 | G417G | ggC | ggT | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp14A2-B | 417 | G417G | ggC | ggT | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp14A2-B | 417 | G417G | ggC | ggT | 1 | 1 | B.1.441 | 0.009615 |
ORF1ab/nsp14A2-B | 417 | G417G | ggC | ggT | 1 | 1 | B.1.456 | 0.003268 |
ORF1ab/nsp14A2-B | 417 | G417G | ggC | ggT | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp14A2-B | 417 | G417G | ggC | ggT | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp14A2-B | 417 | G417G | ggC | ggT | 1 | 1 | B.1.590 | 0.004545 |
ORF1ab/nsp14A2-B | 417 | G417G | ggC | ggA | 1 | 1 | B.1.612 | 0.002653 |
ORF1ab/nsp14A2-B | 417 | G417G | ggC | ggT | 1 | 1 | C.26 | 0.007353 |
ORF1ab/nsp14A2-B | 417 | G417G | ggC | ggT | 1 | 1 | C.36.3 | 0.000567 |
ORF1ab/nsp14A2-B | 417 | G417G | ggC | ggT | 1 | 1 | P.1.2 | 0.001156 |
ORF1ab/nsp14A2-B | 417 | G417G | ggC | ggT | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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