CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp14A2-B | 300 | G300C | G6225C | nonsyn | Ggt | Tgt | 1991 | 1991 | 1 | 18937-18939 |
Details of the mutation G300C within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp14A2-B | 300 | G300C | Ggt | Tgt | 1991 | 1991 | All | 0.000381 |
ORF1ab/nsp14A2-B | 300 | G300C | Ggt | Tgt | 791 | 791 | B.1.1.7 | 0.000708 |
ORF1ab/nsp14A2-B | 300 | G300C | Ggt | Tgt | 494 | 494 | AY.43 | 0.002189 |
ORF1ab/nsp14A2-B | 300 | G300C | Ggt | Tgt | 147 | 147 | AY.4 | 0.000229 |
ORF1ab/nsp14A2-B | 300 | G300C | Ggt | Tgt | 54 | 54 | AY.3 | 0.000537 |
ORF1ab/nsp14A2-B | 300 | G300C | Ggt | Tgt | 52 | 52 | AY.9.1 | 0.004354 |
ORF1ab/nsp14A2-B | 300 | G300C | Ggt | Tgt | 41 | 41 | B.1.177.21 | 0.003135 |
ORF1ab/nsp14A2-B | 300 | G300C | Ggt | Tgt | 32 | 32 | P.1 | 0.000504 |
ORF1ab/nsp14A2-B | 300 | G300C | Ggt | Tgt | 31 | 31 | B.1.351 | 0.000922 |
ORF1ab/nsp14A2-B | 300 | G300C | Ggt | Tgt | 28 | 28 | B.1.1.214 | 0.001553 |
ORF1ab/nsp14A2-B | 300 | G300C | Ggt | Tgt | 26 | 26 | AY.103 | 0.000161 |
ORF1ab/nsp14A2-B | 300 | G300C | Ggt | Tgt | 24 | 24 | B.1.617.2 | 0.00009 |
ORF1ab/nsp14A2-B | 300 | G300C | Ggt | Tgt | 21 | 21 | AY.4.2 | 0.000455 |
ORF1ab/nsp14A2-B | 300 | G300C | Ggt | Tgt | 19 | 19 | B.1.2 | 0.000167 |
ORF1ab/nsp14A2-B | 300 | G300C | Ggt | Tgt | 14 | 14 | B.1.509 | 0.012121 |
ORF1ab/nsp14A2-B | 300 | G300C | Ggt | Tgt | 13 | 13 | AY.25 | 0.000078 |
ORF1ab/nsp14A2-B | 300 | G300C | Ggt | Tgt | 11 | 11 | AY.9.2 | 0.000404 |
ORF1ab/nsp14A2-B | 300 | G300C | Ggt | Tgt | 11 | 11 | B.1.160 | 0.000343 |
ORF1ab/nsp14A2-B | 300 | G300C | Ggt | Tgt | 11 | 11 | B.1.177.86 | 0.002018 |
ORF1ab/nsp14A2-B | 300 | G300C | Ggt | Tgt | 10 | 10 | AY.44 | 0.000061 |
ORF1ab/nsp14A2-B | 300 | G300C | Ggt | Tgt | 9 | 9 | B.1.621 | 0.000797 |
ORF1ab/nsp14A2-B | 300 | G300C | Ggt | Tgt | 8 | 8 | AY.4.5 | 0.00086 |
ORF1ab/nsp14A2-B | 300 | G300C | Ggt | Tgt | 7 | 7 | AY.119 | 0.000247 |
ORF1ab/nsp14A2-B | 300 | G300C | Ggt | Tgt | 7 | 7 | B.1.36 | 0.001021 |
ORF1ab/nsp14A2-B | 300 | G300C | Ggt | Tgt | 6 | 6 | AY.10 | 0.00318 |
ORF1ab/nsp14A2-B | 300 | G300C | Ggt | Tgt | 6 | 6 | AY.41 | 0.001764 |
ORF1ab/nsp14A2-B | 300 | G300C | Ggt | Tgt | 6 | 6 | B.1 | 0.000055 |
ORF1ab/nsp14A2-B | 300 | G300C | Ggt | Tgt | 5 | 5 | B.1.1.519 | 0.000199 |
ORF1ab/nsp14A2-B | 300 | G300C | Ggt | Tgt | 5 | 5 | B.1.177 | 0.000066 |
ORF1ab/nsp14A2-B | 300 | G300C | Ggt | Tgt | 4 | 4 | AY.102 | 0.000106 |
ORF1ab/nsp14A2-B | 300 | G300C | Ggt | Tgt | 4 | 4 | B.1.1 | 0.000073 |
ORF1ab/nsp14A2-B | 300 | G300C | Ggt | Tgt | 4 | 4 | B.1.243 | 0.000278 |
ORF1ab/nsp14A2-B | 300 | G300C | Ggt | Tgt | 4 | 4 | B.1.429 | 0.000094 |
ORF1ab/nsp14A2-B | 300 | G300C | Ggt | Tgt | 4 | 4 | B.1.566 | 0.076923 |
ORF1ab/nsp14A2-B | 300 | G300C | Ggt | Tgt | 4 | 4 | B.1.596 | 0.000349 |
ORF1ab/nsp14A2-B | 300 | G300C | Ggt | Tgt | 3 | 3 | AY.94 | 0.001328 |
ORF1ab/nsp14A2-B | 300 | G300C | Ggt | Tgt | 3 | 3 | B.6.6 | 0.002667 |
ORF1ab/nsp14A2-B | 300 | G300C | Ggt | Tgt | 2 | 2 | AY.20 | 0.000078 |
ORF1ab/nsp14A2-B | 300 | G300C | Ggt | Tgt | 2 | 2 | AY.53 | 0.000575 |
ORF1ab/nsp14A2-B | 300 | G300C | Ggt | Tgt | 2 | 2 | AY.6 | 0.000082 |
ORF1ab/nsp14A2-B | 300 | G300C | Ggt | Tgt | 2 | 2 | AY.62 | 0.000871 |
ORF1ab/nsp14A2-B | 300 | G300C | Ggt | Tgt | 2 | 2 | AY.99.2 | 0.000184 |
ORF1ab/nsp14A2-B | 300 | G300C | Ggt | Tgt | 2 | 2 | B.1.1.15 | 0.027027 |
ORF1ab/nsp14A2-B | 300 | G300C | Ggt | Tgt | 2 | 2 | B.1.36.29 | 0.001035 |
ORF1ab/nsp14A2-B | 300 | G300C | Ggt | Tgt | 2 | 2 | B.1.427 | 0.000101 |
ORF1ab/nsp14A2-B | 300 | G300C | Ggt | Tgt | 2 | 2 | B.1.478 | 0.023529 |
ORF1ab/nsp14A2-B | 300 | G300C | Ggt | Tgt | 2 | 2 | B.1.526 | 0.000047 |
ORF1ab/nsp14A2-B | 300 | G300C | Ggt | Tgt | 2 | 2 | B.1.595 | 0.000522 |
ORF1ab/nsp14A2-B | 300 | G300C | Ggt | Tgt | 2 | 2 | B.1.637 | 0.000146 |
ORF1ab/nsp14A2-B | 300 | G300C | Ggt | Tgt | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp14A2-B | 300 | G300C | Ggt | Tgt | 2 | 2 | P.1.15 | 0.000465 |
ORF1ab/nsp14A2-B | 300 | G300C | Ggt | Tgt | 2 | 2 | R.1 | 0.00018 |
ORF1ab/nsp14A2-B | 300 | G300C | Ggt | Tgt | 2 | 2 | W.2 | 0.009662 |
ORF1ab/nsp14A2-B | 300 | G300C | Ggt | Tgt | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp14A2-B | 300 | G300C | Ggt | Tgt | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp14A2-B | 300 | G300C | Ggt | Tgt | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp14A2-B | 300 | G300C | Ggt | Tgt | 1 | 1 | AY.37 | 0.000316 |
ORF1ab/nsp14A2-B | 300 | G300C | Ggt | Tgt | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp14A2-B | 300 | G300C | Ggt | Tgt | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp14A2-B | 300 | G300C | Ggt | Tgt | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp14A2-B | 300 | G300C | Ggt | Tgt | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp14A2-B | 300 | G300C | Ggt | Tgt | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp14A2-B | 300 | G300C | Ggt | Tgt | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp14A2-B | 300 | G300C | Ggt | Tgt | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp14A2-B | 300 | G300C | Ggt | Tgt | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp14A2-B | 300 | G300C | Ggt | Tgt | 1 | 1 | B | 0.000128 |
ORF1ab/nsp14A2-B | 300 | G300C | Ggt | Tgt | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp14A2-B | 300 | G300C | Ggt | Tgt | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp14A2-B | 300 | G300C | Ggt | Tgt | 1 | 1 | B.1.1.398 | 0.003226 |
ORF1ab/nsp14A2-B | 300 | G300C | Ggt | Tgt | 1 | 1 | B.1.1.402 | 0.011111 |
ORF1ab/nsp14A2-B | 300 | G300C | Ggt | Tgt | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp14A2-B | 300 | G300C | Ggt | Tgt | 1 | 1 | B.1.177.53 | 0.002392 |
ORF1ab/nsp14A2-B | 300 | G300C | Ggt | Tgt | 1 | 1 | B.1.177.56 | 0.000668 |
ORF1ab/nsp14A2-B | 300 | G300C | Ggt | Tgt | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp14A2-B | 300 | G300C | Ggt | Tgt | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp14A2-B | 300 | G300C | Ggt | Tgt | 1 | 1 | B.1.284 | 0.013158 |
ORF1ab/nsp14A2-B | 300 | G300C | Ggt | Tgt | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp14A2-B | 300 | G300C | Ggt | Tgt | 1 | 1 | B.1.377 | 0.004566 |
ORF1ab/nsp14A2-B | 300 | G300C | Ggt | Tgt | 1 | 1 | B.1.391 | 0.001127 |
ORF1ab/nsp14A2-B | 300 | G300C | Ggt | Tgt | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp14A2-B | 300 | G300C | Ggt | Tgt | 1 | 1 | B.1.437 | 0.020833 |
ORF1ab/nsp14A2-B | 300 | G300C | Ggt | Tgt | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp14A2-B | 300 | G300C | Ggt | Tgt | 1 | 1 | B.1.470 | 0.001404 |
ORF1ab/nsp14A2-B | 300 | G300C | Ggt | Tgt | 1 | 1 | B.1.495 | 0.009091 |
ORF1ab/nsp14A2-B | 300 | G300C | Ggt | Tgt | 1 | 1 | B.1.538 | 0.008065 |
ORF1ab/nsp14A2-B | 300 | G300C | Ggt | Tgt | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp14A2-B | 300 | G300C | Ggt | Tgt | 1 | 1 | B.1.568 | 0.001111 |
ORF1ab/nsp14A2-B | 300 | G300C | Ggt | Tgt | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp14A2-B | 300 | G300C | Ggt | Tgt | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp14A2-B | 300 | G300C | Ggt | Tgt | 1 | 1 | B.1.627 | 0.00202 |
ORF1ab/nsp14A2-B | 300 | G300C | Ggt | Tgt | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp14A2-B | 300 | G300C | Ggt | Tgt | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp14A2-B | 300 | G300C | Ggt | Tgt | 1 | 1 | P.1.14 | 0.000048 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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