CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp14A2-B | 143 | G143G | G6068G | syn | ggA | ggG | 10613 | 10088 | 0.950532 | 18466-18468 |
ORF1ab/nsp14A2-B | 143 | G143G | G6068G | syn | ggA | ggC | 10613 | 486 | 0.0457929 | 18466-18468 |
ORF1ab/nsp14A2-B | 143 | G143G | G6068G | syn | ggA | ggT | 10613 | 39 | 0.00367474 | 18466-18468 |
Details of the mutation G143G within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggG | 10088 | 10613 | All | 0.001929 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggC | 486 | 10613 | All | 0.000093 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggT | 39 | 10613 | All | 0.000007 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggG | 5329 | 5329 | AY.13 | 0.857856 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggG | 2422 | 2426 | AY.16 | 0.919514 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggT | 3 | 2426 | AY.16 | 0.001139 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggC | 1 | 2426 | AY.16 | 0.00038 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggG | 796 | 801 | B.1.617.2 | 0.002997 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggC | 3 | 801 | B.1.617.2 | 0.000011 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggT | 2 | 801 | B.1.617.2 | 0.000008 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggG | 421 | 421 | AY.16.1 | 0.197838 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggC | 188 | 188 | B.1.232 | 0.101021 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggG | 161 | 161 | AY.48 | 0.074884 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggG | 109 | 118 | B.1.1.7 | 0.000098 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggC | 6 | 118 | B.1.1.7 | 0.000005 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggT | 3 | 118 | B.1.1.7 | 0.000003 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggG | 98 | 98 | AY.18 | 0.989899 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggG | 80 | 94 | AY.4 | 0.000125 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggC | 11 | 94 | AY.4 | 0.000017 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggT | 3 | 94 | AY.4 | 0.000005 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggG | 72 | 84 | B.1 | 0.000659 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggC | 12 | 84 | B.1 | 0.00011 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggC | 80 | 80 | B.1.567 | 0.266667 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggC | 64 | 64 | AY.113 | 0.009113 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggG | 44 | 44 | AY.51 | 0.04 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggC | 24 | 43 | AY.25 | 0.000144 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggG | 19 | 43 | AY.25 | 0.000114 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggC | 37 | 37 | AS.2 | 0.578125 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggG | 34 | 35 | AY.43 | 0.000151 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggC | 1 | 35 | AY.43 | 0.000004 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggG | 30 | 30 | AY.62 | 0.013072 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggG | 30 | 30 | AY.75 | 0.001681 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggG | 30 | 30 | B.1.349 | 0.021444 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggG | 28 | 28 | AY.46 | 0.002914 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggG | 28 | 28 | AY.55 | 0.025688 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggG | 24 | 24 | AY.44 | 0.000146 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggG | 24 | 24 | AY.65 | 0.012793 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggG | 10 | 22 | P.1 | 0.000158 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggC | 9 | 22 | P.1 | 0.000142 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggT | 3 | 22 | P.1 | 0.000047 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggG | 18 | 18 | AY.40 | 0.017358 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggG | 17 | 18 | AY.70 | 0.003545 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggC | 1 | 18 | AY.70 | 0.000209 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggG | 16 | 18 | B.1.177 | 0.000211 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggC | 2 | 18 | B.1.177 | 0.000026 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggC | 11 | 14 | B.1.1 | 0.0002 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggG | 3 | 14 | B.1.1 | 0.000054 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggG | 13 | 13 | AY.75.1 | 0.002344 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggG | 12 | 12 | AY.54 | 0.001144 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggG | 12 | 12 | AY.73 | 0.007984 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggG | 6 | 12 | B.1.526 | 0.000141 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggT | 4 | 12 | B.1.526 | 0.000094 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggC | 2 | 12 | B.1.526 | 0.000047 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggT | 11 | 11 | AY.4.2 | 0.000239 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggC | 5 | 10 | AY.103 | 0.000031 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggG | 4 | 10 | AY.103 | 0.000025 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggT | 1 | 10 | AY.103 | 0.000006 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggG | 10 | 10 | B.1.617.1 | 0.00129 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggG | 9 | 9 | AY.46.2 | 0.005718 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggG | 9 | 9 | AY.52 | 0.007329 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggG | 8 | 8 | AY.5.4 | 0.002214 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggG | 6 | 7 | AY.3 | 0.00006 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggT | 1 | 7 | AY.3 | 0.00001 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggG | 7 | 7 | AY.49 | 0.022364 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggG | 7 | 7 | AY.61 | 0.000733 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggG | 3 | 7 | B.1.2 | 0.000026 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggT | 3 | 7 | B.1.2 | 0.000026 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggC | 1 | 7 | B.1.2 | 0.000009 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggG | 6 | 6 | AY.37 | 0.001896 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggG | 5 | 6 | AY.84 | 0.002187 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggC | 1 | 6 | AY.84 | 0.000437 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggG | 6 | 6 | AY.9.2 | 0.00022 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggC | 6 | 6 | B.1.258 | 0.000399 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggG | 5 | 5 | AY.118 | 0.000313 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggG | 5 | 5 | AY.119 | 0.000177 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggG | 5 | 5 | AY.38 | 0.002496 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggG | 5 | 5 | AY.39 | 0.000124 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggG | 5 | 5 | AY.7.2 | 0.002796 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggC | 5 | 5 | B.1.595 | 0.001305 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggC | 3 | 4 | AY.7.1 | 0.000338 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggG | 1 | 4 | AY.7.1 | 0.000113 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggG | 3 | 3 | A.2.5 | 0.001497 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggG | 3 | 3 | AY.10 | 0.00159 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggG | 3 | 3 | AY.114 | 0.000693 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggG | 3 | 3 | AY.20 | 0.000117 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggG | 3 | 3 | AY.26 | 0.000085 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggG | 3 | 3 | AY.34 | 0.000291 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggG | 3 | 3 | AY.47 | 0.000093 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggG | 3 | 3 | AY.68 | 0.000821 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggG | 3 | 3 | AY.98.1 | 0.000145 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggG | 3 | 3 | B.1.1.284 | 0.000322 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggG | 3 | 3 | B.1.214 | 0.010989 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggC | 2 | 3 | B.1.369 | 0.00057 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggG | 1 | 3 | B.1.369 | 0.000285 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggG | 2 | 2 | AY.1 | 0.000791 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggG | 2 | 2 | AY.105 | 0.001286 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggG | 2 | 2 | AY.106 | 0.00067 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggG | 2 | 2 | AY.111 | 0.000366 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggG | 2 | 2 | AY.117 | 0.000169 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggG | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggT | 1 | 2 | AY.29 | 0.000016 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggC | 1 | 2 | AY.29 | 0.000016 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggG | 2 | 2 | AY.36 | 0.000296 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggG | 2 | 2 | AY.39.1 | 0.000079 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggG | 2 | 2 | AY.42 | 0.00008 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggG | 2 | 2 | AY.59 | 0.001059 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggG | 2 | 2 | AY.78 | 0.003082 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggG | 2 | 2 | AY.9 | 0.000135 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggG | 1 | 2 | AY.9.1 | 0.000084 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggC | 1 | 2 | AY.9.1 | 0.000084 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggG | 2 | 2 | AY.98 | 0.000158 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggG | 2 | 2 | B | 0.000256 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggG | 2 | 2 | B.1.1.316 | 0.00185 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggG | 1 | 2 | B.1.243 | 0.00007 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggC | 1 | 2 | B.1.243 | 0.00007 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggG | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggT | 2 | 2 | B.1.422 | 0.001625 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggG | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggG | 2 | 2 | B.1.621 | 0.000177 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggG | 1 | 1 | A | 0.000387 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggG | 1 | 1 | AS.1 | 0.009524 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggC | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggG | 1 | 1 | AY.107 | 0.000466 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggT | 1 | 1 | AY.109 | 0.00074 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggG | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggG | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggG | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggG | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggC | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggG | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggG | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggC | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggG | 1 | 1 | AY.58 | 0.000907 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggG | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggG | 1 | 1 | AY.72 | 0.001361 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggG | 1 | 1 | AY.90 | 0.000684 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggG | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggG | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggG | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggG | 1 | 1 | B.1.1.189 | 0.001513 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggC | 1 | 1 | B.1.1.228 | 0.003049 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggG | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggG | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggC | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggG | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggC | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggG | 1 | 1 | B.1.335 | 0.010309 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggT | 1 | 1 | B.1.398 | 0.002976 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggC | 1 | 1 | B.1.459 | 0.004082 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggG | 1 | 1 | B.1.468 | 0.005714 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggG | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggC | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp14A2-B | 143 | G143G | ggA | ggG | 1 | 1 | C.36.3.1 | 0.002717 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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