CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp14A2-B : Mut = F377F

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF1ab/nsp14A2-B	377	F377F	F6302F	syn	ttC	ttT	10684	10684	1	19168-19170

Details of the mutation F377F within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	10684	10684	All	0.002043
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	1545	1545	B.1.1.7	0.001383
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	974	974	B.1.617.2	0.003668
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	869	869	B.1.1.10	0.968785
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	576	576	AY.4	0.000896
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	529	529	AY.43	0.002344
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	526	526	B.1.2	0.004632
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	525	525	L.1	1
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	282	282	AY.4.2.1	0.042014
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	272	272	L.3	0.964539
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	237	237	AY.103	0.001472
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	222	222	AY.25	0.001335
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	212	212	AY.44	0.00129
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	180	180	B.1	0.001649
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	159	159	AY.14	0.013994
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	127	127	AY.3	0.001263
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	112	112	AY.100	0.005153
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	105	105	AY.39	0.002595
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	102	102	P.1	0.001607
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	101	101	B.1.1.519	0.004011
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	101	101	B.1.221.2	0.405622
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	100	100	B.1.526	0.00235
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	88	88	L.2	1
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	85	85	B.1.221.4	0.354167
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	77	77	D.2	0.005778
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	76	76	B.1.1	0.001379
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	72	72	AY.62	0.031373
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	72	72	AY.90	0.049281
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	63	63	B.1.160	0.001965
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	62	62	B.1.1.222	0.012648
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	61	61	B.1.416.1	0.095312
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	60	60	B.1.188	1
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	56	56	AY.102	0.001485
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	50	50	AY.119	0.001765
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	50	50	B.1.177	0.000658
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	45	45	A.23.1	0.03169
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	41	41	B.1.1.318	0.012372
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	41	41	B.1.351	0.001219
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	40	40	AY.26	0.001132
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	38	38	P.1.17	0.006147
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	37	37	AY.20	0.001438
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	37	37	B.1.595.3	0.973684
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	36	36	AY.9.2	0.001322
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	36	36	B.1.177.5	0.04472
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	34	34	B.1.1.306	0.014906
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	33	33	B.1.221	0.002344
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	32	32	AY.6	0.001316
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	31	31	AY.4.2	0.000672
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	28	28	AY.5	0.000578
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	27	27	AF.1	1
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	27	27	AY.29	0.000426
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	27	27	AY.53	0.007763
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	27	27	B.1.1.420	0.027163
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	27	27	B.1.400	0.011583
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	26	26	B.1.595	0.006785
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	25	25	AY.23	0.001744
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	24	24	AY.9.1	0.002009
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	24	24	C.37	0.002786
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	23	23	AY.121	0.003112
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	23	23	AY.81	0.045817
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	23	23	B.1.621	0.002036
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	22	22	B.1.438.1	0.00236
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	22	22	B.1.596	0.001917
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	21	21	AY.120	0.000781
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	21	21	AY.47	0.000653
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	21	21	AY.75	0.001176
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	21	21	B.1.177.81	0.003976
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	21	21	B.1.258	0.001397
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	21	21	B.1.429	0.000494
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	20	20	AY.33	0.001336
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	20	20	AY.46.6	0.001444
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	20	20	B.1.1.25	0.01137
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	20	20	L.4	1
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	19	19	B.1.199	0.078512
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	19	19	B.1.396	0.013409
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	18	18	B.4.6	0.3
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	17	17	B.1.1.317	0.006999
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	17	17	P.2	0.003173
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	16	16	AY.46	0.001665
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	16	16	B.1.427	0.000808
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	15	15	AY.45	0.001825
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	13	13	AY.117	0.001099
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	13	13	AY.27	0.000841
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	13	13	AY.42	0.000523
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	13	13	B.1.1.311	0.004656
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	13	13	B.1.243	0.000905
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	13	13	B.1.406	0.078788
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	13	13	B.1.466.2	0.005086
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	12	12	B	0.001534
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	11	11	B.1.1.434	0.003834
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	11	11	B.1.637	0.000804
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	10	10	B.1.1.33	0.004209
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	10	10	B.1.1.440	0.117647
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	10	10	B.1.177.60	0.002184
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	9	9	AY.39.1	0.000357
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	9	9	AY.61	0.000943
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	9	9	B.1.1.28	0.002801
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	9	9	B.1.632	0.060403
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	8	8	AY.118	0.000501
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	8	8	AY.4.5	0.00086
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	8	8	B.1.459	0.032653
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	8	8	B.1.587	0.01518
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	8	8	B.1.609	0.003835
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	8	8	B.1.621.1	0.004047
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	8	8	B.1.628	0.002819
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	7	7	AY.109	0.005178
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	7	7	AY.68	0.001916
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	7	7	AY.95	0.005327
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	7	7	B.1.206	0.00571
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	7	7	B.1.36.29	0.003621
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	7	7	B.1.582	0.003435
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	7	7	Q.1	0.000884
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	6	6	AY.34.1	0.00306
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	6	6	AY.92	0.001724
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	6	6	AY.98	0.000474
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	6	6	B.1.147	0.004535
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	6	6	B.1.36	0.000875
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	6	6	B.1.597	0.027778
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	5	5	AY.105	0.003215
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	5	5	AY.110	0.000563
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	5	5	AY.23.1	0.002087
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	5	5	AY.41	0.00147
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	5	5	AY.74	0.000578
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	5	5	AY.79	0.006053
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	5	5	B.1.1.133	0.042373
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	5	5	B.1.1.369	0.002231
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	5	5	B.1.351.2	0.001513
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	5	5	B.1.525	0.000566
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	4	4	A.28	0.010582
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	4	4	AY.111	0.000733
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	4	4	AY.113	0.00057
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	4	4	AY.114	0.000924
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	4	4	AY.30	0.001583
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	4	4	AY.5.3	0.00135
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	4	4	AY.55	0.00367
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	4	4	AY.7	0.000784
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	4	4	AY.84	0.00175
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	4	4	AY.93	0.001092
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	4	4	AY.98.1	0.000194
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	4	4	AY.99.2	0.000369
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	4	4	B.1.1.348	0.003185
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	4	4	B.1.1.39	0.002039
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	4	4	B.1.1.70	0.001364
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	4	4	B.1.177.65	0.002661
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	4	4	B.1.234	0.000528
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	4	4	B.1.279	0.002054
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	4	4	B.1.369	0.001141
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	4	4	B.1.404	0.005208
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	4	4	B.1.509	0.003463
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	4	4	B.1.580	0.01626
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	4	4	B.1.617.1	0.000516
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	4	4	B.1.619	0.003484
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	4	4	P.1.15	0.000929
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	4	4	Q.7	0.004444
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	3	3		0.166667
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	3	3	AY.29.1	0.000662
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	3	3	AY.37	0.000948
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	3	3	AY.5.4	0.00083
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	3	3	AY.51	0.002727
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	3	3	AY.59	0.001589
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	3	3	AY.65	0.001599
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	3	3	AY.67	0.001393
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	3	3	AY.71	0.001425
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	3	3	AY.75.1	0.000541
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	3	3	B.1.1.1	0.00098
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	3	3	B.1.1.351	0.00838
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	3	3	B.1.177.21	0.000229
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	3	3	B.1.177.57	0.000843
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	3	3	B.1.177.82	0.001432
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	3	3	B.1.258.17	0.000312
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	3	3	B.1.3	0.007853
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	3	3	B.1.499	0.003151
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	3	3	B.1.548	0.107143
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	3	3	B.1.576	0.00272
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	3	3	B.4	0.006623
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	3	3	B.58	0.030612
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	3	3	B.6.6	0.002667
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	3	3	P.1.12	0.001452
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	3	3	P.1.14	0.000143
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	2	2	A.29	0.010638
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	2	2	AD.2	0.000438
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	2	2	AY.108	0.002205
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	2	2	AY.120.2.1	0.000997
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	2	2	AY.16	0.000759
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	2	2	AY.3.1	0.000171
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	2	2	AY.32	0.001065
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	2	2	AY.34	0.000194
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	2	2	AY.46.2	0.001271
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	2	2	AY.46.5	0.000397
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	2	2	AY.52	0.001629
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	2	2	AY.54	0.000191
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	2	2	AY.58	0.001815
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	2	2	AY.64	0.00119
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	2	2	AY.89	0.009804
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	2	2	AY.9	0.000135
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	2	2	AY.91	0.001461
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	2	2	AZ.2	0.001642
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	2	2	B.1.1.307	0.005063
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	2	2	B.1.1.448	0.004065
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	2	2	B.1.110.3	0.001437
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	2	2	B.1.146	0.008475
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	2	2	B.1.160.16	0.001859
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	2	2	B.1.177.50	0.00939
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	2	2	B.1.177.69	0.002967
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	2	2	B.1.177.73	0.001133
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	2	2	B.1.177.83	0.002963
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	2	2	B.1.210	0.004264
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	2	2	B.1.232	0.001075
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	2	2	B.1.36.17	0.000988
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	2	2	B.1.375	0.001639
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	2	2	B.1.381	0.015625
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	2	2	B.1.409	0.001563
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	2	2	B.1.411	0.007407
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	2	2	B.1.416	0.002538
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	2	2	B.1.456	0.006536
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	2	2	B.1.517	0.000854
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	2	2	B.1.564	0.000852
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	2	2	B.1.565	0.001621
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	2	2	B.1.618	0.008065
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	2	2	C.14	0.008658
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	2	2	N.5	0.003534
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	2	2	P.3	0.00319
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	1	1	A	0.000387
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	1	1	A.1	0.000282
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	1	1	A.2.5.1	0.004808
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	1	1	AP.1	0.001502
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	1	1	AY.101	0.00049
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	1	1	AY.107	0.000466
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	1	1	AY.116	0.000287
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	1	1	AY.13	0.000161
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	1	1	AY.19	0.00114
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	1	1	AY.24	0.000431
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	1	1	AY.39.1.1	0.000725
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	1	1	AY.46.4	0.000165
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	1	1	AY.66	0.00107
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	1	1	AY.69	0.000187
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	1	1	AY.76	0.004831
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	1	1	AY.77	0.001127
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	1	1	AY.86	0.00083
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	1	1	AY.87	0.000833
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	1	1	AY.94	0.000443
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	1	1	AY.99	0.001049
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	1	1	AZ.3	0.00152
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	1	1	B.1.1.138	0.006061
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	1	1	B.1.1.171	0.003676
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	1	1	B.1.1.255	0.00303
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	1	1	B.1.1.269	0.001353
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	1	1	B.1.1.277	0.000759
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	1	1	B.1.1.291	0.000742
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	1	1	B.1.1.294	0.001266
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	1	1	B.1.1.37	0.000193
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	1	1	B.1.1.372	0.000689
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	1	1	B.1.1.375	0.011905
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	1	1	B.1.1.378	0.007299
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	1	1	B.1.1.409	0.002833
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	1	1	B.1.1.412	0.007634
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	1	1	B.1.1.54	0.003021
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	1	1	B.1.1.95	0.019608
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	1	1	B.1.126	0.001276
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	1	1	B.1.131	0.008772
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	1	1	B.1.142	0.002899
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	1	1	B.1.149	0.003425
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	1	1	B.1.160.22	0.006757
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	1	1	B.1.170	0.00431
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	1	1	B.1.177.12	0.000152
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	1	1	B.1.177.16	0.000664
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	1	1	B.1.177.32	0.00135
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	1	1	B.1.177.42	0.000894
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	1	1	B.1.177.44	0.000519
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	1	1	B.1.177.48	0.003125
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	1	1	B.1.177.52	0.001757
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	1	1	B.1.177.55	0.002331
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	1	1	B.1.177.62	0.001192
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	1	1	B.1.177.7	0.000165
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	1	1	B.1.177.86	0.000183
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	1	1	B.1.177.9	0.001332
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	1	1	B.1.187	0.033333
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	1	1	B.1.223	0.002778
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	1	1	B.1.235	0.002519
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	1	1	B.1.240	0.000216
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	1	1	B.1.241	0.000812
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	1	1	B.1.258.11	0.000396
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	1	1	B.1.265	0.001271
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	1	1	B.1.289	0.00266
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	1	1	B.1.298	0.002114
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	1	1	B.1.311	0.000275
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	1	1	B.1.324	0.001605
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	1	1	B.1.332	0.003497
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	1	1	B.1.336	0.002439
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	1	1	B.1.348	0.018182
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	1	1	B.1.351.3	0.000876
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	1	1	B.1.36.18	0.00042
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	1	1	B.1.36.22	0.001208
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	1	1	B.1.36.36	0.000602
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	1	1	B.1.36.8	0.001
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	1	1	B.1.361	0.001289
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	1	1	B.1.436	0.001029
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	1	1	B.1.441	0.009615
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	1	1	B.1.470	0.001404
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	1	1	B.1.480	0.002488
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	1	1	B.1.505	0.004386
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	1	1	B.1.524	0.001406
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	1	1	B.1.538	0.008065
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	1	1	B.1.543	0.01
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	1	1	B.1.546	0.003704
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	1	1	B.1.561	0.000397
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	1	1	B.1.575	0.000303
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	1	1	B.1.575.1	0.002439
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	1	1	B.1.577	0.000687
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	1	1	B.1.588	0.00091
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	1	1	B.1.589	0.007576
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	1	1	B.1.596.1	0.009346
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	1	1	B.1.601	0.030303
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	1	1	B.1.606	0.006024
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	1	1	B.1.623	0.000536
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	1	1	B.1.625	0.002353
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	1	1	B.1.630	0.005236
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	1	1	B.1.636	0.006711
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	1	1	B.1.9	0.006173
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	1	1	B.1.93	0.000934
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	1	1	B.10	0.008264
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	1	1	B.11	0.005128
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	1	1	B.3	0.000831
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	1	1	B.55	0.00295
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	1	1	B.6	0.00091
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	1	1	C.30	0.001727
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	1	1	C.35	0.000774
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	1	1	C.36	0.000911
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	1	1	N.4	0.004255
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	1	1	P.1.10	0.000269
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	1	1	P.1.4	0.000977
ORF1ab/nsp14A2-B	377	F377F	ttC	ttT	1	1	P.1.7	0.000319

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.