CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp14A2-B | 375 | D375Y | D6300Y | nonsyn | Gac | Tac | 1070 | 1068 | 0.998131 | 19162-19164 |
ORF1ab/nsp14A2-B | 375 | D375Y | D6300Y | nonsyn | GaC | TaT | 1070 | 2 | 0.00186916 | 19162-19164 |
Details of the mutation D375Y within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp14A2-B | 375 | D375Y | Gac | Tac | 1068 | 1070 | All | 0.000204 |
ORF1ab/nsp14A2-B | 375 | D375Y | GaC | TaT | 2 | 1070 | All | 0 |
ORF1ab/nsp14A2-B | 375 | D375Y | Gac | Tac | 120 | 121 | AY.4 | 0.000187 |
ORF1ab/nsp14A2-B | 375 | D375Y | GaC | TaT | 1 | 121 | AY.4 | 0.000002 |
ORF1ab/nsp14A2-B | 375 | D375Y | Gac | Tac | 92 | 92 | AY.23 | 0.006417 |
ORF1ab/nsp14A2-B | 375 | D375Y | Gac | Tac | 86 | 86 | AY.43 | 0.000381 |
ORF1ab/nsp14A2-B | 375 | D375Y | Gac | Tac | 78 | 78 | B.1.177.35 | 0.053905 |
ORF1ab/nsp14A2-B | 375 | D375Y | Gac | Tac | 71 | 71 | B.1.1.7 | 0.000064 |
ORF1ab/nsp14A2-B | 375 | D375Y | Gac | Tac | 56 | 56 | B.1.617.2 | 0.000211 |
ORF1ab/nsp14A2-B | 375 | D375Y | Gac | Tac | 51 | 51 | AY.5 | 0.001053 |
ORF1ab/nsp14A2-B | 375 | D375Y | Gac | Tac | 47 | 47 | AY.39 | 0.001161 |
ORF1ab/nsp14A2-B | 375 | D375Y | Gac | Tac | 47 | 47 | B.1 | 0.00043 |
ORF1ab/nsp14A2-B | 375 | D375Y | Gac | Tac | 27 | 27 | AY.103 | 0.000168 |
ORF1ab/nsp14A2-B | 375 | D375Y | Gac | Tac | 22 | 22 | AY.98.1 | 0.001065 |
ORF1ab/nsp14A2-B | 375 | D375Y | Gac | Tac | 20 | 20 | AY.44 | 0.000122 |
ORF1ab/nsp14A2-B | 375 | D375Y | Gac | Tac | 20 | 20 | B.1.177 | 0.000263 |
ORF1ab/nsp14A2-B | 375 | D375Y | Gac | Tac | 18 | 18 | AY.111 | 0.003297 |
ORF1ab/nsp14A2-B | 375 | D375Y | Gac | Tac | 18 | 18 | B.1.351 | 0.000535 |
ORF1ab/nsp14A2-B | 375 | D375Y | Gac | Tac | 16 | 16 | B.1.177.81 | 0.003029 |
ORF1ab/nsp14A2-B | 375 | D375Y | Gac | Tac | 15 | 15 | AY.25 | 0.00009 |
ORF1ab/nsp14A2-B | 375 | D375Y | Gac | Tac | 14 | 14 | P.1 | 0.000221 |
ORF1ab/nsp14A2-B | 375 | D375Y | Gac | Tac | 13 | 13 | AY.36 | 0.001927 |
ORF1ab/nsp14A2-B | 375 | D375Y | Gac | Tac | 13 | 13 | AY.9.2 | 0.000477 |
ORF1ab/nsp14A2-B | 375 | D375Y | Gac | Tac | 11 | 11 | AY.3 | 0.000109 |
ORF1ab/nsp14A2-B | 375 | D375Y | Gac | Tac | 11 | 11 | B.1.177.86 | 0.002018 |
ORF1ab/nsp14A2-B | 375 | D375Y | Gac | Tac | 9 | 9 | AZ.4 | 0.030201 |
ORF1ab/nsp14A2-B | 375 | D375Y | Gac | Tac | 7 | 7 | B.1.177.42 | 0.006261 |
ORF1ab/nsp14A2-B | 375 | D375Y | Gac | Tac | 6 | 6 | AY.102 | 0.000159 |
ORF1ab/nsp14A2-B | 375 | D375Y | Gac | Tac | 6 | 6 | AY.95 | 0.004566 |
ORF1ab/nsp14A2-B | 375 | D375Y | Gac | Tac | 6 | 6 | B.1.1.216 | 0.005343 |
ORF1ab/nsp14A2-B | 375 | D375Y | Gac | Tac | 6 | 6 | B.1.1.50 | 0.004073 |
ORF1ab/nsp14A2-B | 375 | D375Y | Gac | Tac | 5 | 5 | AY.12 | 0.00158 |
ORF1ab/nsp14A2-B | 375 | D375Y | Gac | Tac | 5 | 5 | AY.19 | 0.005701 |
ORF1ab/nsp14A2-B | 375 | D375Y | Gac | Tac | 5 | 5 | AY.20 | 0.000194 |
ORF1ab/nsp14A2-B | 375 | D375Y | Gac | Tac | 5 | 5 | AY.26 | 0.000142 |
ORF1ab/nsp14A2-B | 375 | D375Y | Gac | Tac | 5 | 5 | AY.45 | 0.000608 |
ORF1ab/nsp14A2-B | 375 | D375Y | Gac | Tac | 5 | 5 | B.1.160 | 0.000156 |
ORF1ab/nsp14A2-B | 375 | D375Y | Gac | Tac | 5 | 5 | B.1.258 | 0.000333 |
ORF1ab/nsp14A2-B | 375 | D375Y | Gac | Tac | 4 | 4 | AY.79 | 0.004843 |
ORF1ab/nsp14A2-B | 375 | D375Y | Gac | Tac | 4 | 4 | B.1.1.464 | 0.005891 |
ORF1ab/nsp14A2-B | 375 | D375Y | Gac | Tac | 4 | 4 | B.1.221 | 0.000284 |
ORF1ab/nsp14A2-B | 375 | D375Y | Gac | Tac | 3 | 3 | AY.33 | 0.0002 |
ORF1ab/nsp14A2-B | 375 | D375Y | Gac | Tac | 3 | 3 | AY.39.1 | 0.000119 |
ORF1ab/nsp14A2-B | 375 | D375Y | Gac | Tac | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp14A2-B | 375 | D375Y | Gac | Tac | 3 | 3 | B.1.36 | 0.000438 |
ORF1ab/nsp14A2-B | 375 | D375Y | Gac | Tac | 3 | 3 | B.1.574 | 0.006452 |
ORF1ab/nsp14A2-B | 375 | D375Y | Gac | Tac | 3 | 3 | B.1.621 | 0.000266 |
ORF1ab/nsp14A2-B | 375 | D375Y | Gac | Tac | 3 | 3 | C.37 | 0.000348 |
ORF1ab/nsp14A2-B | 375 | D375Y | Gac | Tac | 3 | 3 | P.2 | 0.00056 |
ORF1ab/nsp14A2-B | 375 | D375Y | GaC | TaT | 1 | 2 | 0.055556 | |
ORF1ab/nsp14A2-B | 375 | D375Y | Gac | Tac | 1 | 2 | 0.055556 | |
ORF1ab/nsp14A2-B | 375 | D375Y | Gac | Tac | 2 | 2 | AY.100 | 0.000092 |
ORF1ab/nsp14A2-B | 375 | D375Y | Gac | Tac | 2 | 2 | AY.110 | 0.000225 |
ORF1ab/nsp14A2-B | 375 | D375Y | Gac | Tac | 2 | 2 | AY.116 | 0.000574 |
ORF1ab/nsp14A2-B | 375 | D375Y | Gac | Tac | 2 | 2 | AY.27 | 0.000129 |
ORF1ab/nsp14A2-B | 375 | D375Y | Gac | Tac | 2 | 2 | AY.35 | 0.000466 |
ORF1ab/nsp14A2-B | 375 | D375Y | Gac | Tac | 2 | 2 | AY.46 | 0.000208 |
ORF1ab/nsp14A2-B | 375 | D375Y | Gac | Tac | 2 | 2 | AY.47 | 0.000062 |
ORF1ab/nsp14A2-B | 375 | D375Y | Gac | Tac | 2 | 2 | AY.61 | 0.00021 |
ORF1ab/nsp14A2-B | 375 | D375Y | Gac | Tac | 2 | 2 | B.1.1.10 | 0.00223 |
ORF1ab/nsp14A2-B | 375 | D375Y | Gac | Tac | 2 | 2 | B.1.1.214 | 0.000111 |
ORF1ab/nsp14A2-B | 375 | D375Y | Gac | Tac | 2 | 2 | B.1.1.256 | 0.027397 |
ORF1ab/nsp14A2-B | 375 | D375Y | Gac | Tac | 2 | 2 | B.1.1.33 | 0.000842 |
ORF1ab/nsp14A2-B | 375 | D375Y | Gac | Tac | 2 | 2 | B.1.111 | 0.00235 |
ORF1ab/nsp14A2-B | 375 | D375Y | Gac | Tac | 2 | 2 | B.1.160.7 | 0.004158 |
ORF1ab/nsp14A2-B | 375 | D375Y | Gac | Tac | 2 | 2 | B.1.177.57 | 0.000562 |
ORF1ab/nsp14A2-B | 375 | D375Y | Gac | Tac | 2 | 2 | B.1.3 | 0.005236 |
ORF1ab/nsp14A2-B | 375 | D375Y | Gac | Tac | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp14A2-B | 375 | D375Y | Gac | Tac | 2 | 2 | B.1.466.2 | 0.000782 |
ORF1ab/nsp14A2-B | 375 | D375Y | Gac | Tac | 2 | 2 | B.1.617.1 | 0.000258 |
ORF1ab/nsp14A2-B | 375 | D375Y | Gac | Tac | 1 | 1 | A.25 | 0.018182 |
ORF1ab/nsp14A2-B | 375 | D375Y | Gac | Tac | 1 | 1 | A.28 | 0.002646 |
ORF1ab/nsp14A2-B | 375 | D375Y | Gac | Tac | 1 | 1 | AT.1 | 0.005128 |
ORF1ab/nsp14A2-B | 375 | D375Y | Gac | Tac | 1 | 1 | AY.10 | 0.00053 |
ORF1ab/nsp14A2-B | 375 | D375Y | Gac | Tac | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp14A2-B | 375 | D375Y | Gac | Tac | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp14A2-B | 375 | D375Y | Gac | Tac | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp14A2-B | 375 | D375Y | Gac | Tac | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp14A2-B | 375 | D375Y | Gac | Tac | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp14A2-B | 375 | D375Y | Gac | Tac | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp14A2-B | 375 | D375Y | Gac | Tac | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp14A2-B | 375 | D375Y | Gac | Tac | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp14A2-B | 375 | D375Y | Gac | Tac | 1 | 1 | AY.48 | 0.000465 |
ORF1ab/nsp14A2-B | 375 | D375Y | Gac | Tac | 1 | 1 | AY.5.2 | 0.002463 |
ORF1ab/nsp14A2-B | 375 | D375Y | Gac | Tac | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp14A2-B | 375 | D375Y | Gac | Tac | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp14A2-B | 375 | D375Y | Gac | Tac | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp14A2-B | 375 | D375Y | Gac | Tac | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp14A2-B | 375 | D375Y | Gac | Tac | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp14A2-B | 375 | D375Y | Gac | Tac | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp14A2-B | 375 | D375Y | Gac | Tac | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp14A2-B | 375 | D375Y | Gac | Tac | 1 | 1 | B | 0.000128 |
ORF1ab/nsp14A2-B | 375 | D375Y | Gac | Tac | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp14A2-B | 375 | D375Y | Gac | Tac | 1 | 1 | B.1.1.45 | 0.014085 |
ORF1ab/nsp14A2-B | 375 | D375Y | Gac | Tac | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp14A2-B | 375 | D375Y | Gac | Tac | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp14A2-B | 375 | D375Y | Gac | Tac | 1 | 1 | B.1.177.87 | 0.000728 |
ORF1ab/nsp14A2-B | 375 | D375Y | Gac | Tac | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp14A2-B | 375 | D375Y | Gac | Tac | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp14A2-B | 375 | D375Y | Gac | Tac | 1 | 1 | B.1.214.2 | 0.0006 |
ORF1ab/nsp14A2-B | 375 | D375Y | Gac | Tac | 1 | 1 | B.1.22 | 0.001318 |
ORF1ab/nsp14A2-B | 375 | D375Y | Gac | Tac | 1 | 1 | B.1.236 | 0.002053 |
ORF1ab/nsp14A2-B | 375 | D375Y | Gac | Tac | 1 | 1 | B.1.280 | 0.007143 |
ORF1ab/nsp14A2-B | 375 | D375Y | Gac | Tac | 1 | 1 | B.1.363 | 0.012987 |
ORF1ab/nsp14A2-B | 375 | D375Y | Gac | Tac | 1 | 1 | B.1.465 | 0.003802 |
ORF1ab/nsp14A2-B | 375 | D375Y | Gac | Tac | 1 | 1 | B.1.499 | 0.00105 |
ORF1ab/nsp14A2-B | 375 | D375Y | Gac | Tac | 1 | 1 | B.1.523 | 0.002451 |
ORF1ab/nsp14A2-B | 375 | D375Y | Gac | Tac | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp14A2-B | 375 | D375Y | Gac | Tac | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp14A2-B | 375 | D375Y | Gac | Tac | 1 | 1 | B.1.546 | 0.003704 |
ORF1ab/nsp14A2-B | 375 | D375Y | Gac | Tac | 1 | 1 | B.1.595.4 | 0.007299 |
ORF1ab/nsp14A2-B | 375 | D375Y | Gac | Tac | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp14A2-B | 375 | D375Y | Gac | Tac | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp14A2-B | 375 | D375Y | Gac | Tac | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp14A2-B | 375 | D375Y | Gac | Tac | 1 | 1 | B.1.9.5 | 0.005682 |
ORF1ab/nsp14A2-B | 375 | D375Y | Gac | Tac | 1 | 1 | B.6.6 | 0.000889 |
ORF1ab/nsp14A2-B | 375 | D375Y | Gac | Tac | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp14A2-B | 375 | D375Y | Gac | Tac | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp14A2-B | 375 | D375Y | Gac | Tac | 1 | 1 | P.1.2 | 0.001156 |
ORF1ab/nsp14A2-B | 375 | D375Y | Gac | Tac | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp14A2-B | 375 | D375Y | Gac | Tac | 1 | 1 | Q.4 | 0.000455 |
ORF1ab/nsp14A2-B | 375 | D375Y | Gac | Tac | 1 | 1 | Q.8 | 0.000165 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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