CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp14A2-B | 179 | D179D | D6104D | syn | gaC | gaT | 2394 | 2394 | 1 | 18574-18576 |
Details of the mutation D179D within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp14A2-B | 179 | D179D | gaC | gaT | 2394 | 2394 | All | 0.000458 |
ORF1ab/nsp14A2-B | 179 | D179D | gaC | gaT | 1071 | 1071 | B.1.1.7 | 0.000959 |
ORF1ab/nsp14A2-B | 179 | D179D | gaC | gaT | 177 | 177 | S.1 | 0.876238 |
ORF1ab/nsp14A2-B | 179 | D179D | gaC | gaT | 150 | 150 | B.1.617.2 | 0.000565 |
ORF1ab/nsp14A2-B | 179 | D179D | gaC | gaT | 138 | 138 | AY.47 | 0.004293 |
ORF1ab/nsp14A2-B | 179 | D179D | gaC | gaT | 110 | 110 | AY.4 | 0.000171 |
ORF1ab/nsp14A2-B | 179 | D179D | gaC | gaT | 76 | 76 | AY.100 | 0.003497 |
ORF1ab/nsp14A2-B | 179 | D179D | gaC | gaT | 63 | 63 | B.1.2 | 0.000555 |
ORF1ab/nsp14A2-B | 179 | D179D | gaC | gaT | 52 | 52 | P.2 | 0.009705 |
ORF1ab/nsp14A2-B | 179 | D179D | gaC | gaT | 46 | 46 | AY.3 | 0.000458 |
ORF1ab/nsp14A2-B | 179 | D179D | gaC | gaT | 44 | 44 | B.1.36 | 0.00642 |
ORF1ab/nsp14A2-B | 179 | D179D | gaC | gaT | 44 | 44 | B.1.621.1 | 0.022256 |
ORF1ab/nsp14A2-B | 179 | D179D | gaC | gaT | 38 | 38 | AY.25 | 0.000229 |
ORF1ab/nsp14A2-B | 179 | D179D | gaC | gaT | 34 | 34 | AY.44 | 0.000207 |
ORF1ab/nsp14A2-B | 179 | D179D | gaC | gaT | 31 | 31 | P.1 | 0.000488 |
ORF1ab/nsp14A2-B | 179 | D179D | gaC | gaT | 30 | 30 | B.1 | 0.000275 |
ORF1ab/nsp14A2-B | 179 | D179D | gaC | gaT | 25 | 25 | AY.20 | 0.000972 |
ORF1ab/nsp14A2-B | 179 | D179D | gaC | gaT | 20 | 20 | AY.36 | 0.002964 |
ORF1ab/nsp14A2-B | 179 | D179D | gaC | gaT | 16 | 16 | B.1.160 | 0.000499 |
ORF1ab/nsp14A2-B | 179 | D179D | gaC | gaT | 11 | 11 | B.1.1 | 0.0002 |
ORF1ab/nsp14A2-B | 179 | D179D | gaC | gaT | 10 | 10 | B.1.526 | 0.000235 |
ORF1ab/nsp14A2-B | 179 | D179D | gaC | gaT | 9 | 9 | AY.43 | 0.00004 |
ORF1ab/nsp14A2-B | 179 | D179D | gaC | gaT | 9 | 9 | B.1.177 | 0.000119 |
ORF1ab/nsp14A2-B | 179 | D179D | gaC | gaT | 9 | 9 | B.1.241 | 0.007305 |
ORF1ab/nsp14A2-B | 179 | D179D | gaC | gaT | 9 | 9 | B.1.243 | 0.000626 |
ORF1ab/nsp14A2-B | 179 | D179D | gaC | gaT | 8 | 8 | B.1.258 | 0.000532 |
ORF1ab/nsp14A2-B | 179 | D179D | gaC | gaT | 8 | 8 | P.3 | 0.012759 |
ORF1ab/nsp14A2-B | 179 | D179D | gaC | gaT | 6 | 6 | AY.61 | 0.000629 |
ORF1ab/nsp14A2-B | 179 | D179D | gaC | gaT | 5 | 5 | AY.117 | 0.000423 |
ORF1ab/nsp14A2-B | 179 | D179D | gaC | gaT | 5 | 5 | AY.4.2 | 0.000108 |
ORF1ab/nsp14A2-B | 179 | D179D | gaC | gaT | 4 | 4 | AY.102 | 0.000106 |
ORF1ab/nsp14A2-B | 179 | D179D | gaC | gaT | 4 | 4 | AY.33 | 0.000267 |
ORF1ab/nsp14A2-B | 179 | D179D | gaC | gaT | 4 | 4 | AY.46.4 | 0.000658 |
ORF1ab/nsp14A2-B | 179 | D179D | gaC | gaT | 4 | 4 | AY.5 | 0.000083 |
ORF1ab/nsp14A2-B | 179 | D179D | gaC | gaT | 4 | 4 | AY.7 | 0.000784 |
ORF1ab/nsp14A2-B | 179 | D179D | gaC | gaT | 4 | 4 | B.1.351 | 0.000119 |
ORF1ab/nsp14A2-B | 179 | D179D | gaC | gaT | 4 | 4 | B.1.427 | 0.000202 |
ORF1ab/nsp14A2-B | 179 | D179D | gaC | gaT | 4 | 4 | B.1.462 | 0.028986 |
ORF1ab/nsp14A2-B | 179 | D179D | gaC | gaT | 4 | 4 | P.1.15 | 0.000929 |
ORF1ab/nsp14A2-B | 179 | D179D | gaC | gaT | 3 | 3 | A.2.5 | 0.001497 |
ORF1ab/nsp14A2-B | 179 | D179D | gaC | gaT | 3 | 3 | AG.1 | 0.2 |
ORF1ab/nsp14A2-B | 179 | D179D | gaC | gaT | 3 | 3 | AY.120.1 | 0.000963 |
ORF1ab/nsp14A2-B | 179 | D179D | gaC | gaT | 3 | 3 | AY.42 | 0.000121 |
ORF1ab/nsp14A2-B | 179 | D179D | gaC | gaT | 3 | 3 | AY.98 | 0.000237 |
ORF1ab/nsp14A2-B | 179 | D179D | gaC | gaT | 3 | 3 | AY.98.1 | 0.000145 |
ORF1ab/nsp14A2-B | 179 | D179D | gaC | gaT | 3 | 3 | AY.99.2 | 0.000276 |
ORF1ab/nsp14A2-B | 179 | D179D | gaC | gaT | 3 | 3 | B.1.1.70 | 0.001023 |
ORF1ab/nsp14A2-B | 179 | D179D | gaC | gaT | 2 | 2 | AY.29 | 0.000032 |
ORF1ab/nsp14A2-B | 179 | D179D | gaC | gaT | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp14A2-B | 179 | D179D | gaC | gaT | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp14A2-B | 179 | D179D | gaC | gaT | 2 | 2 | AY.6 | 0.000082 |
ORF1ab/nsp14A2-B | 179 | D179D | gaC | gaT | 2 | 2 | B.1.1.216 | 0.001781 |
ORF1ab/nsp14A2-B | 179 | D179D | gaC | gaT | 2 | 2 | B.1.177.21 | 0.000153 |
ORF1ab/nsp14A2-B | 179 | D179D | gaC | gaT | 2 | 2 | B.1.320 | 0.002491 |
ORF1ab/nsp14A2-B | 179 | D179D | gaC | gaT | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp14A2-B | 179 | D179D | gaC | gaT | 2 | 2 | B.1.582 | 0.000981 |
ORF1ab/nsp14A2-B | 179 | D179D | gaC | gaT | 2 | 2 | B.1.621 | 0.000177 |
ORF1ab/nsp14A2-B | 179 | D179D | gaC | gaT | 2 | 2 | P.1.7 | 0.000639 |
ORF1ab/nsp14A2-B | 179 | D179D | gaC | gaT | 2 | 2 | Q.8 | 0.00033 |
ORF1ab/nsp14A2-B | 179 | D179D | gaC | gaT | 1 | 1 | A.5 | 0.001923 |
ORF1ab/nsp14A2-B | 179 | D179D | gaC | gaT | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp14A2-B | 179 | D179D | gaC | gaT | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp14A2-B | 179 | D179D | gaC | gaT | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp14A2-B | 179 | D179D | gaC | gaT | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp14A2-B | 179 | D179D | gaC | gaT | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp14A2-B | 179 | D179D | gaC | gaT | 1 | 1 | AY.2 | 0.000356 |
ORF1ab/nsp14A2-B | 179 | D179D | gaC | gaT | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp14A2-B | 179 | D179D | gaC | gaT | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp14A2-B | 179 | D179D | gaC | gaT | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp14A2-B | 179 | D179D | gaC | gaT | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp14A2-B | 179 | D179D | gaC | gaT | 1 | 1 | AY.40 | 0.000964 |
ORF1ab/nsp14A2-B | 179 | D179D | gaC | gaT | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp14A2-B | 179 | D179D | gaC | gaT | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp14A2-B | 179 | D179D | gaC | gaT | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp14A2-B | 179 | D179D | gaC | gaT | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp14A2-B | 179 | D179D | gaC | gaT | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp14A2-B | 179 | D179D | gaC | gaT | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp14A2-B | 179 | D179D | gaC | gaT | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp14A2-B | 179 | D179D | gaC | gaT | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp14A2-B | 179 | D179D | gaC | gaT | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp14A2-B | 179 | D179D | gaC | gaT | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp14A2-B | 179 | D179D | gaC | gaT | 1 | 1 | B.1.1.170 | 0.001247 |
ORF1ab/nsp14A2-B | 179 | D179D | gaC | gaT | 1 | 1 | B.1.1.198 | 0.001468 |
ORF1ab/nsp14A2-B | 179 | D179D | gaC | gaT | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp14A2-B | 179 | D179D | gaC | gaT | 1 | 1 | B.1.1.217 | 0.003636 |
ORF1ab/nsp14A2-B | 179 | D179D | gaC | gaT | 1 | 1 | B.1.1.261 | 0.008621 |
ORF1ab/nsp14A2-B | 179 | D179D | gaC | gaT | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp14A2-B | 179 | D179D | gaC | gaT | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp14A2-B | 179 | D179D | gaC | gaT | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp14A2-B | 179 | D179D | gaC | gaT | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp14A2-B | 179 | D179D | gaC | gaT | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp14A2-B | 179 | D179D | gaC | gaT | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp14A2-B | 179 | D179D | gaC | gaT | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp14A2-B | 179 | D179D | gaC | gaT | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp14A2-B | 179 | D179D | gaC | gaT | 1 | 1 | B.1.258.11 | 0.000396 |
ORF1ab/nsp14A2-B | 179 | D179D | gaC | gaT | 1 | 1 | B.1.265 | 0.001271 |
ORF1ab/nsp14A2-B | 179 | D179D | gaC | gaT | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp14A2-B | 179 | D179D | gaC | gaT | 1 | 1 | B.1.404 | 0.001302 |
ORF1ab/nsp14A2-B | 179 | D179D | gaC | gaT | 1 | 1 | B.1.411 | 0.003704 |
ORF1ab/nsp14A2-B | 179 | D179D | gaC | gaT | 1 | 1 | B.1.441 | 0.009615 |
ORF1ab/nsp14A2-B | 179 | D179D | gaC | gaT | 1 | 1 | B.1.451 | 0.008197 |
ORF1ab/nsp14A2-B | 179 | D179D | gaC | gaT | 1 | 1 | B.1.468 | 0.005714 |
ORF1ab/nsp14A2-B | 179 | D179D | gaC | gaT | 1 | 1 | B.1.503 | 0.002488 |
ORF1ab/nsp14A2-B | 179 | D179D | gaC | gaT | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp14A2-B | 179 | D179D | gaC | gaT | 1 | 1 | B.1.580 | 0.004065 |
ORF1ab/nsp14A2-B | 179 | D179D | gaC | gaT | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp14A2-B | 179 | D179D | gaC | gaT | 1 | 1 | B.1.599 | 0.00365 |
ORF1ab/nsp14A2-B | 179 | D179D | gaC | gaT | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp14A2-B | 179 | D179D | gaC | gaT | 1 | 1 | B.6.6 | 0.000889 |
ORF1ab/nsp14A2-B | 179 | D179D | gaC | gaT | 1 | 1 | C.11 | 0.010638 |
ORF1ab/nsp14A2-B | 179 | D179D | gaC | gaT | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp14A2-B | 179 | D179D | gaC | gaT | 1 | 1 | C.8 | 0.004464 |
ORF1ab/nsp14A2-B | 179 | D179D | gaC | gaT | 1 | 1 | N.5 | 0.001767 |
ORF1ab/nsp14A2-B | 179 | D179D | gaC | gaT | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp14A2-B | 179 | D179D | gaC | gaT | 1 | 1 | Q.3 | 0.000145 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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