CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp14A2-B : Mut = C216C

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp14A2-B216C216CC6141CsyntgCtgT1564515645118685-18687

Details of the mutation C216C within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp14A2-B216C216CtgCtgT1564515645All0.002992
ORF1ab/nsp14A2-B216C216CtgCtgT57545754AY.4.2.10.857271
ORF1ab/nsp14A2-B216C216CtgCtgT37913791AY.4.20.082222
ORF1ab/nsp14A2-B216C216CtgCtgT17841784B.1.1.70.001597
ORF1ab/nsp14A2-B216C216CtgCtgT797797B.1.1.1700.993766
ORF1ab/nsp14A2-B216C216CtgCtgT486486B.1.617.20.00183
ORF1ab/nsp14A2-B216C216CtgCtgT280280AY.40.000436
ORF1ab/nsp14A2-B216C216CtgCtgT219219B.10.002006
ORF1ab/nsp14A2-B216C216CtgCtgT181181AY.260.005124
ORF1ab/nsp14A2-B216C216CtgCtgT180180AY.30.00179
ORF1ab/nsp14A2-B216C216CtgCtgT129129AY.1030.000801
ORF1ab/nsp14A2-B216C216CtgCtgT122122AY.430.000541
ORF1ab/nsp14A2-B216C216CtgCtgT120120B.1.20.001057
ORF1ab/nsp14A2-B216C216CtgCtgT115115AY.1140.026577
ORF1ab/nsp14A2-B216C216CtgCtgT111111P.10.001749
ORF1ab/nsp14A2-B216C216CtgCtgT104104B.1.1280.066074
ORF1ab/nsp14A2-B216C216CtgCtgT8686AY.920.024706
ORF1ab/nsp14A2-B216C216CtgCtgT6666B.1.10.001197
ORF1ab/nsp14A2-B216C216CtgCtgT6262B.1.3360.15122
ORF1ab/nsp14A2-B216C216CtgCtgT5656AY.440.000341
ORF1ab/nsp14A2-B216C216CtgCtgT4343AY.250.000259
ORF1ab/nsp14A2-B216C216CtgCtgT3939B.1.1770.000514
ORF1ab/nsp14A2-B216C216CtgCtgT3636B.1.1.2140.001996
ORF1ab/nsp14A2-B216C216CtgCtgT3636B.1.2340.00475
ORF1ab/nsp14A2-B216C216CtgCtgT3333B.1.4270.001666
ORF1ab/nsp14A2-B216C216CtgCtgT3232AY.230.002232
ORF1ab/nsp14A2-B216C216CtgCtgT3131AY.840.013561
ORF1ab/nsp14A2-B216C216CtgCtgT2929AY.390.000717
ORF1ab/nsp14A2-B216C216CtgCtgT2929AY.9.20.001065
ORF1ab/nsp14A2-B216C216CtgCtgT2727AY.1020.000716
ORF1ab/nsp14A2-B216C216CtgCtgT2626B.1.1.860.928571
ORF1ab/nsp14A2-B216C216CtgCtgT2525AY.290.000394
ORF1ab/nsp14A2-B216C216CtgCtgT2525AY.340.002424
ORF1ab/nsp14A2-B216C216CtgCtgT2222C.370.002553
ORF1ab/nsp14A2-B216C216CtgCtgT2121B.1.6210.001859
ORF1ab/nsp14A2-B216C216CtgCtgT2020B.1.4290.000471
ORF1ab/nsp14A2-B216C216CtgCtgT1919P.1.140.000908
ORF1ab/nsp14A2-B216C216CtgCtgT1818AY.1200.000669
ORF1ab/nsp14A2-B216C216CtgCtgT1818B.1.2580.001198
ORF1ab/nsp14A2-B216C216CtgCtgT1616AY.820.02171
ORF1ab/nsp14A2-B216C216CtgCtgT1616B.1.5260.000376
ORF1ab/nsp14A2-B216C216CtgCtgT1515AY.200.000583
ORF1ab/nsp14A2-B216C216CtgCtgT1414AY.50.000289
ORF1ab/nsp14A2-B216C216CtgCtgT1414AY.980.001106
ORF1ab/nsp14A2-B216C216CtgCtgT1414AY.99.20.00129
ORF1ab/nsp14A2-B216C216CtgCtgT1414B.1.6370.001023
ORF1ab/nsp14A2-B216C216CtgCtgT1313AY.1190.000459
ORF1ab/nsp14A2-B216C216CtgCtgT1313AY.5.30.004386
ORF1ab/nsp14A2-B216C216CtgCtgT1313B.1.177.340.684211
ORF1ab/nsp14A2-B216C216CtgCtgT1313B.1.5960.001133
ORF1ab/nsp14A2-B216C216CtgCtgT1212AY.420.000483
ORF1ab/nsp14A2-B216C216CtgCtgT1212B.1.3510.000357
ORF1ab/nsp14A2-B216C216CtgCtgT1111AY.1130.001566
ORF1ab/nsp14A2-B216C216CtgCtgT1111B.1.4700.015449
ORF1ab/nsp14A2-B216C216CtgCtgT1111B.1.5820.005397
ORF1ab/nsp14A2-B216C216CtgCtgT1010AY.460.001041
ORF1ab/nsp14A2-B216C216CtgCtgT1010AY.470.000311
ORF1ab/nsp14A2-B216C216CtgCtgT1010B0.001278
ORF1ab/nsp14A2-B216C216CtgCtgT1010B.1.1600.000312
ORF1ab/nsp14A2-B216C216CtgCtgT1010B.1.177.210.000765
ORF1ab/nsp14A2-B216C216CtgCtgT99C.360.008197
ORF1ab/nsp14A2-B216C216CtgCtgT88AY.1170.000676
ORF1ab/nsp14A2-B216C216CtgCtgT88AY.3.10.000682
ORF1ab/nsp14A2-B216C216CtgCtgT88B.1.2430.000557
ORF1ab/nsp14A2-B216C216CtgCtgT77AY.1000.000322
ORF1ab/nsp14A2-B216C216CtgCtgT77B.1.1.5280.033654
ORF1ab/nsp14A2-B216C216CtgCtgT77B.1.177.770.005084
ORF1ab/nsp14A2-B216C216CtgCtgT77B.1.466.20.002739
ORF1ab/nsp14A2-B216C216CtgCtgT66AY.1180.000376
ORF1ab/nsp14A2-B216C216CtgCtgT66AY.1210.000812
ORF1ab/nsp14A2-B216C216CtgCtgT66AY.9.10.000502
ORF1ab/nsp14A2-B216C216CtgCtgT66B.1.1.280.001867
ORF1ab/nsp14A2-B216C216CtgCtgT66B.1.1110.007051
ORF1ab/nsp14A2-B216C216CtgCtgT66B.1.5950.001566
ORF1ab/nsp14A2-B216C216CtgCtgT66B.1.6200.005676
ORF1ab/nsp14A2-B216C216CtgCtgT55AE.50.092593
ORF1ab/nsp14A2-B216C216CtgCtgT55AY.1050.003215
ORF1ab/nsp14A2-B216C216CtgCtgT55AY.590.002648
ORF1ab/nsp14A2-B216C216CtgCtgT55AY.610.000524
ORF1ab/nsp14A2-B216C216CtgCtgT55AY.770.005637
ORF1ab/nsp14A2-B216C216CtgCtgT55B.1.1.2220.00102
ORF1ab/nsp14A2-B216C216CtgCtgT55B.1.1.5190.000199
ORF1ab/nsp14A2-B216C216CtgCtgT55B.1.1920.046296
ORF1ab/nsp14A2-B216C216CtgCtgT55B.1.2400.001078
ORF1ab/nsp14A2-B216C216CtgCtgT55B.1.5170.002135
ORF1ab/nsp14A2-B216C216CtgCtgT44AY.270.000259
ORF1ab/nsp14A2-B216C216CtgCtgT44AY.4.50.00043
ORF1ab/nsp14A2-B216C216CtgCtgT44AY.60.000165
ORF1ab/nsp14A2-B216C216CtgCtgT44AY.640.002381
ORF1ab/nsp14A2-B216C216CtgCtgT44AY.680.001095
ORF1ab/nsp14A2-B216C216CtgCtgT44AY.750.000224
ORF1ab/nsp14A2-B216C216CtgCtgT44AY.870.003331
ORF1ab/nsp14A2-B216C216CtgCtgT44B.1.1.3060.001754
ORF1ab/nsp14A2-B216C216CtgCtgT44B.1.1.3110.001433
ORF1ab/nsp14A2-B216C216CtgCtgT44B.1.1.330.001684
ORF1ab/nsp14A2-B216C216CtgCtgT44B.1.177.820.001909
ORF1ab/nsp14A2-B216C216CtgCtgT44B.1.2210.000284
ORF1ab/nsp14A2-B216C216CtgCtgT44B.1.360.000584
ORF1ab/nsp14A2-B216C216CtgCtgT44B.1.4970.001259
ORF1ab/nsp14A2-B216C216CtgCtgT44P.1.150.000929
ORF1ab/nsp14A2-B216C216CtgCtgT44P.1.70.001277
ORF1ab/nsp14A2-B216C216CtgCtgT44Q.80.00066
ORF1ab/nsp14A2-B216C216CtgCtgT33AY.46.50.000595
ORF1ab/nsp14A2-B216C216CtgCtgT33AY.46.60.000217
ORF1ab/nsp14A2-B216C216CtgCtgT33AY.510.002727
ORF1ab/nsp14A2-B216C216CtgCtgT33AY.90.000203
ORF1ab/nsp14A2-B216C216CtgCtgT33B.1.1.1330.025424
ORF1ab/nsp14A2-B216C216CtgCtgT33B.1.1.3720.002066
ORF1ab/nsp14A2-B216C216CtgCtgT33B.1.2320.001612
ORF1ab/nsp14A2-B216C216CtgCtgT33B.1.2650.003812
ORF1ab/nsp14A2-B216C216CtgCtgT33B.1.3690.000856
ORF1ab/nsp14A2-B216C216CtgCtgT33B.1.4800.007463
ORF1ab/nsp14A2-B216C216CtgCtgT33B.1.4990.003151
ORF1ab/nsp14A2-B216C216CtgCtgT33B.1.6090.001438
ORF1ab/nsp14A2-B216C216CtgCtgT33B.60.00273
ORF1ab/nsp14A2-B216C216CtgCtgT33C.310.053571
ORF1ab/nsp14A2-B216C216CtgCtgT33D.20.000225
ORF1ab/nsp14A2-B216C216CtgCtgT33P.20.00056
ORF1ab/nsp14A2-B216C216CtgCtgT22A0.000774
ORF1ab/nsp14A2-B216C216CtgCtgT22A.2.50.000998
ORF1ab/nsp14A2-B216C216CtgCtgT22AE.80.000978
ORF1ab/nsp14A2-B216C216CtgCtgT22AY.1100.000225
ORF1ab/nsp14A2-B216C216CtgCtgT22AY.140.000176
ORF1ab/nsp14A2-B216C216CtgCtgT22AY.400.001929
ORF1ab/nsp14A2-B216C216CtgCtgT22AY.450.000243
ORF1ab/nsp14A2-B216C216CtgCtgT22AY.540.000191
ORF1ab/nsp14A2-B216C216CtgCtgT22AY.7.20.001119
ORF1ab/nsp14A2-B216C216CtgCtgT22AY.75.10.000361
ORF1ab/nsp14A2-B216C216CtgCtgT22AY.940.000885
ORF1ab/nsp14A2-B216C216CtgCtgT22B.1.1.250.001137
ORF1ab/nsp14A2-B216C216CtgCtgT22B.1.1.2550.006061
ORF1ab/nsp14A2-B216C216CtgCtgT22B.1.1.3090.011696
ORF1ab/nsp14A2-B216C216CtgCtgT22B.1.1.3480.001592
ORF1ab/nsp14A2-B216C216CtgCtgT22B.1.1.370.000386
ORF1ab/nsp14A2-B216C216CtgCtgT22B.1.1.3850.008929
ORF1ab/nsp14A2-B216C216CtgCtgT22B.1.1.4200.002012
ORF1ab/nsp14A2-B216C216CtgCtgT22B.1.1.700.000682
ORF1ab/nsp14A2-B216C216CtgCtgT22B.1.177.40.000422
ORF1ab/nsp14A2-B216C216CtgCtgT22B.1.177.600.000437
ORF1ab/nsp14A2-B216C216CtgCtgT22B.1.177.730.001133
ORF1ab/nsp14A2-B216C216CtgCtgT22B.1.3980.005952
ORF1ab/nsp14A2-B216C216CtgCtgT22N.40.008511
ORF1ab/nsp14A2-B216C216CtgCtgT22P.30.00319
ORF1ab/nsp14A2-B216C216CtgCtgT11A.20.000662
ORF1ab/nsp14A2-B216C216CtgCtgT11A.210.00277
ORF1ab/nsp14A2-B216C216CtgCtgT11AY.1010.00049
ORF1ab/nsp14A2-B216C216CtgCtgT11AY.1060.000335
ORF1ab/nsp14A2-B216C216CtgCtgT11AY.1080.001103
ORF1ab/nsp14A2-B216C216CtgCtgT11AY.1160.000287
ORF1ab/nsp14A2-B216C216CtgCtgT11AY.120.000316
ORF1ab/nsp14A2-B216C216CtgCtgT11AY.130.000161
ORF1ab/nsp14A2-B216C216CtgCtgT11AY.190.00114
ORF1ab/nsp14A2-B216C216CtgCtgT11AY.240.000431
ORF1ab/nsp14A2-B216C216CtgCtgT11AY.330.000067
ORF1ab/nsp14A2-B216C216CtgCtgT11AY.350.000233
ORF1ab/nsp14A2-B216C216CtgCtgT11AY.370.000316
ORF1ab/nsp14A2-B216C216CtgCtgT11AY.5.40.000277
ORF1ab/nsp14A2-B216C216CtgCtgT11AY.500.000799
ORF1ab/nsp14A2-B216C216CtgCtgT11AY.550.000917
ORF1ab/nsp14A2-B216C216CtgCtgT11AY.580.000907
ORF1ab/nsp14A2-B216C216CtgCtgT11AY.620.000436
ORF1ab/nsp14A2-B216C216CtgCtgT11AY.690.000187
ORF1ab/nsp14A2-B216C216CtgCtgT11AY.70.000196
ORF1ab/nsp14A2-B216C216CtgCtgT11AY.700.000209
ORF1ab/nsp14A2-B216C216CtgCtgT11AY.780.001541
ORF1ab/nsp14A2-B216C216CtgCtgT11AY.790.001211
ORF1ab/nsp14A2-B216C216CtgCtgT11AY.910.00073
ORF1ab/nsp14A2-B216C216CtgCtgT11AY.930.000273
ORF1ab/nsp14A2-B216C216CtgCtgT11AY.990.001049
ORF1ab/nsp14A2-B216C216CtgCtgT11AZ.10.000867
ORF1ab/nsp14A2-B216C216CtgCtgT11B.1.1.1290.009174
ORF1ab/nsp14A2-B216C216CtgCtgT11B.1.1.1590.004673
ORF1ab/nsp14A2-B216C216CtgCtgT11B.1.1.1710.003676
ORF1ab/nsp14A2-B216C216CtgCtgT11B.1.1.1740.003378
ORF1ab/nsp14A2-B216C216CtgCtgT11B.1.1.1940.00495
ORF1ab/nsp14A2-B216C216CtgCtgT11B.1.1.2070.001182
ORF1ab/nsp14A2-B216C216CtgCtgT11B.1.1.2160.00089
ORF1ab/nsp14A2-B216C216CtgCtgT11B.1.1.2200.001859
ORF1ab/nsp14A2-B216C216CtgCtgT11B.1.1.2320.001815
ORF1ab/nsp14A2-B216C216CtgCtgT11B.1.1.2410.00207
ORF1ab/nsp14A2-B216C216CtgCtgT11B.1.1.2740.005051
ORF1ab/nsp14A2-B216C216CtgCtgT11B.1.1.2840.000107
ORF1ab/nsp14A2-B216C216CtgCtgT11B.1.1.2910.000742
ORF1ab/nsp14A2-B216C216CtgCtgT11B.1.1.2940.001266
ORF1ab/nsp14A2-B216C216CtgCtgT11B.1.1.3180.000302
ORF1ab/nsp14A2-B216C216CtgCtgT11B.1.1.3290.003846
ORF1ab/nsp14A2-B216C216CtgCtgT11B.1.1.3360.016667
ORF1ab/nsp14A2-B216C216CtgCtgT11B.1.1.3690.000446
ORF1ab/nsp14A2-B216C216CtgCtgT11B.1.1.3790.03125
ORF1ab/nsp14A2-B216C216CtgCtgT11B.1.1.3830.0625
ORF1ab/nsp14A2-B216C216CtgCtgT11B.1.1.4090.002833
ORF1ab/nsp14A2-B216C216CtgCtgT11B.1.1.4320.001266
ORF1ab/nsp14A2-B216C216CtgCtgT11B.1.1100.004525
ORF1ab/nsp14A2-B216C216CtgCtgT11B.1.160.140.002119
ORF1ab/nsp14A2-B216C216CtgCtgT11B.1.160.310.008065
ORF1ab/nsp14A2-B216C216CtgCtgT11B.1.177.160.000664
ORF1ab/nsp14A2-B216C216CtgCtgT11B.1.177.320.00135
ORF1ab/nsp14A2-B216C216CtgCtgT11B.1.177.410.0025
ORF1ab/nsp14A2-B216C216CtgCtgT11B.1.177.440.000519
ORF1ab/nsp14A2-B216C216CtgCtgT11B.1.177.570.000281
ORF1ab/nsp14A2-B216C216CtgCtgT11B.1.2100.002132
ORF1ab/nsp14A2-B216C216CtgCtgT11B.1.2220.001692
ORF1ab/nsp14A2-B216C216CtgCtgT11B.1.258.30.001675
ORF1ab/nsp14A2-B216C216CtgCtgT11B.1.2840.013158
ORF1ab/nsp14A2-B216C216CtgCtgT11B.1.2930.0125
ORF1ab/nsp14A2-B216C216CtgCtgT11B.1.3110.000275
ORF1ab/nsp14A2-B216C216CtgCtgT11B.1.3240.001605
ORF1ab/nsp14A2-B216C216CtgCtgT11B.1.3370.005587
ORF1ab/nsp14A2-B216C216CtgCtgT11B.1.36.80.001
ORF1ab/nsp14A2-B216C216CtgCtgT11B.1.3960.000706
ORF1ab/nsp14A2-B216C216CtgCtgT11B.1.438.10.000107
ORF1ab/nsp14A2-B216C216CtgCtgT11B.1.4560.003268
ORF1ab/nsp14A2-B216C216CtgCtgT11B.1.4630.008065
ORF1ab/nsp14A2-B216C216CtgCtgT11B.1.4730.019231
ORF1ab/nsp14A2-B216C216CtgCtgT11B.1.5250.000113
ORF1ab/nsp14A2-B216C216CtgCtgT11B.1.5480.035714
ORF1ab/nsp14A2-B216C216CtgCtgT11B.1.5740.002151
ORF1ab/nsp14A2-B216C216CtgCtgT11B.1.5760.000907
ORF1ab/nsp14A2-B216C216CtgCtgT11B.1.5850.027778
ORF1ab/nsp14A2-B216C216CtgCtgT11B.1.5930.01087
ORF1ab/nsp14A2-B216C216CtgCtgT11B.1.6000.005848
ORF1ab/nsp14A2-B216C216CtgCtgT11B.1.6050.005952
ORF1ab/nsp14A2-B216C216CtgCtgT11B.1.6120.002653
ORF1ab/nsp14A2-B216C216CtgCtgT11B.1.617.10.000129
ORF1ab/nsp14A2-B216C216CtgCtgT11B.1.621.10.000506
ORF1ab/nsp14A2-B216C216CtgCtgT11B.400.000364
ORF1ab/nsp14A2-B216C216CtgCtgT11B.580.010204
ORF1ab/nsp14A2-B216C216CtgCtgT11B.6.60.000889
ORF1ab/nsp14A2-B216C216CtgCtgT11C.130.025641
ORF1ab/nsp14A2-B216C216CtgCtgT11C.160.00106
ORF1ab/nsp14A2-B216C216CtgCtgT11N.50.001767
ORF1ab/nsp14A2-B216C216CtgCtgT11P.40.003802
ORF1ab/nsp14A2-B216C216CtgCtgT11Q.10.000126
ORF1ab/nsp14A2-B216C216CtgCtgT11Q.20.000613
ORF1ab/nsp14A2-B216C216CtgCtgT11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.