CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp14A2-B : Mut = A504del1

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp14A2-B504A504del1A6429del1delGCT-NN25170.6819549-19551
ORF1ab/nsp14A2-B504A504del1A6429del1delGct-ct2550.219549-19551
ORF1ab/nsp14A2-B504A504del1A6429del1delgcTgc-2530.1219549-19551

Details of the mutation A504del1 within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp14A2-B504A504del1GCT-NN1725All0.000003
ORF1ab/nsp14A2-B504A504del1Gct-ct525All0.000001
ORF1ab/nsp14A2-B504A504del1gcTgc-325All0.000001
ORF1ab/nsp14A2-B504A504del1Gct-ct23AY.430.000009
ORF1ab/nsp14A2-B504A504del1gcTgc-13AY.430.000004
ORF1ab/nsp14A2-B504A504del1GCT-NN33B.1.1.70.000003
ORF1ab/nsp14A2-B504A504del1GCT-NN22AY.440.000012
ORF1ab/nsp14A2-B504A504del1GCT-NN22B.10.000018
ORF1ab/nsp14A2-B504A504del1GCT-NN22B.1.20.000018
ORF1ab/nsp14A2-B504A504del1GCT-NN22B.1.4290.000047
ORF1ab/nsp14A2-B504A504del1gcTgc-12B.1.5260.000024
ORF1ab/nsp14A2-B504A504del1GCT-NN12B.1.5260.000024
ORF1ab/nsp14A2-B504A504del1GCT-NN22B.1.5960.000174
ORF1ab/nsp14A2-B504A504del1Gct-ct11AY.250.000006
ORF1ab/nsp14A2-B504A504del1gcTgc-11AY.260.000028
ORF1ab/nsp14A2-B504A504del1Gct-ct11AY.34.10.00051
ORF1ab/nsp14A2-B504A504del1GCT-NN11B.1.1.4160.000905
ORF1ab/nsp14A2-B504A504del1GCT-NN11B.1.3510.00003
ORF1ab/nsp14A2-B504A504del1GCT-NN11B.1.5680.001111
ORF1ab/nsp14A2-B504A504del1Gct-ct11C.360.000911