CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp14A2-B : Mut = A504S

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp14A2-B504A504SA6429SnonsynGctTct493049200.99797219549-19551
ORF1ab/nsp14A2-B504A504SA6429SnonsynGCTAGC493050.001014219549-19551
ORF1ab/nsp14A2-B504A504SA6429SnonsynGcTTcA493020.0004056819549-19551
ORF1ab/nsp14A2-B504A504SA6429SnonsynGCtAGt493020.0004056819549-19551
ORF1ab/nsp14A2-B504A504SA6429SnonsynGcTTcG493010.0002028419549-19551

Details of the mutation A504S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp14A2-B504A504SGctTct49204930All0.000941
ORF1ab/nsp14A2-B504A504SGCTAGC54930All0.000001
ORF1ab/nsp14A2-B504A504SGCtAGt24930All0
ORF1ab/nsp14A2-B504A504SGcTTcA24930All0
ORF1ab/nsp14A2-B504A504SGcTTcG14930All0
ORF1ab/nsp14A2-B504A504SGctTct28372838AY.40.004416
ORF1ab/nsp14A2-B504A504SGcTTcG12838AY.40.000002
ORF1ab/nsp14A2-B504A504SGctTct294294B.1.1.70.000263
ORF1ab/nsp14A2-B504A504SGctTct264264AY.260.007474
ORF1ab/nsp14A2-B504A504SGctTct217218B.1.617.20.000817
ORF1ab/nsp14A2-B504A504SGCTAGC1218B.1.617.20.000004
ORF1ab/nsp14A2-B504A504SGctTct204204AY.440.001242
ORF1ab/nsp14A2-B504A504SGctTct180180AY.430.000797
ORF1ab/nsp14A2-B504A504SGctTct8989B.1.36.380.146141
ORF1ab/nsp14A2-B504A504SGctTct6767B.1.36.20.72043
ORF1ab/nsp14A2-B504A504SGctTct5656AY.1200.002082
ORF1ab/nsp14A2-B504A504SGctTct4547B.1.10.000816
ORF1ab/nsp14A2-B504A504SGCTAGC147B.1.10.000018
ORF1ab/nsp14A2-B504A504SGcTTcA147B.1.10.000018
ORF1ab/nsp14A2-B504A504SGctTct4242B.1.1770.000553
ORF1ab/nsp14A2-B504A504SGctTct3939B.1.4290.000918
ORF1ab/nsp14A2-B504A504SGctTct3838AY.1020.001008
ORF1ab/nsp14A2-B504A504SGctTct3030AY.50.000619
ORF1ab/nsp14A2-B504A504SGctTct3030P.20.005599
ORF1ab/nsp14A2-B504A504SGctTct2929AY.600.027205
ORF1ab/nsp14A2-B504A504SGctTct2727AY.9.20.000992
ORF1ab/nsp14A2-B504A504SGctTct2121AY.470.000653
ORF1ab/nsp14A2-B504A504SGctTct2121B.1.3110.005766
ORF1ab/nsp14A2-B504A504SGctTct1920B.10.000174
ORF1ab/nsp14A2-B504A504SGCTAGC120B.10.000009
ORF1ab/nsp14A2-B504A504SGctTct1717AY.250.000102
ORF1ab/nsp14A2-B504A504SGctTct1717B.1.1.3450.73913
ORF1ab/nsp14A2-B504A504SGctTct1717B.1.20.00015
ORF1ab/nsp14A2-B504A504SGctTct1414B.1.3510.000416
ORF1ab/nsp14A2-B504A504SGctTct1414P.10.000221
ORF1ab/nsp14A2-B504A504SGctTct1313B.1.177.560.008678
ORF1ab/nsp14A2-B504A504SGctTct1313B.1.2580.000865
ORF1ab/nsp14A2-B504A504SGctTct1111AY.30.000109
ORF1ab/nsp14A2-B504A504SGctTct1111AY.420.000443
ORF1ab/nsp14A2-B504A504SGctTct1010AY.1170.000845
ORF1ab/nsp14A2-B504A504SGctTct99AY.1030.000056
ORF1ab/nsp14A2-B504A504SGctTct88AY.290.000126
ORF1ab/nsp14A2-B504A504SGctTct77AY.390.000173
ORF1ab/nsp14A2-B504A504SGctTct77AY.4.50.000752
ORF1ab/nsp14A2-B504A504SGctTct77B.1.1.3180.002112
ORF1ab/nsp14A2-B504A504SGctTct66AY.410.001764
ORF1ab/nsp14A2-B504A504SGctTct66AY.460.000624
ORF1ab/nsp14A2-B504A504SGctTct66AY.990.006296
ORF1ab/nsp14A2-B504A504SGctTct55AY.200.000194
ORF1ab/nsp14A2-B504A504SGctTct55B.1.5650.004052
ORF1ab/nsp14A2-B504A504SGctTct55N.40.021277
ORF1ab/nsp14A2-B504A504SGctTct44AY.230.000279
ORF1ab/nsp14A2-B504A504SGctTct34AY.330.0002
ORF1ab/nsp14A2-B504A504SGCtAGt14AY.330.000067
ORF1ab/nsp14A2-B504A504SGctTct44AY.4.30.003367
ORF1ab/nsp14A2-B504A504SGctTct44B.1.1.5190.000159
ORF1ab/nsp14A2-B504A504SGctTct44B.1.351.50.002398
ORF1ab/nsp14A2-B504A504SGctTct44B.1.5250.000453
ORF1ab/nsp14A2-B504A504SGctTct44C.370.000464
ORF1ab/nsp14A2-B504A504SGctTct33AY.1000.000138
ORF1ab/nsp14A2-B504A504SGctTct33AY.1040.005952
ORF1ab/nsp14A2-B504A504SGctTct33AY.1130.000427
ORF1ab/nsp14A2-B504A504SGctTct33AY.270.000194
ORF1ab/nsp14A2-B504A504SGctTct33AY.4.20.000065
ORF1ab/nsp14A2-B504A504SGctTct33AY.4.2.10.000447
ORF1ab/nsp14A2-B504A504SGctTct33AY.510.002727
ORF1ab/nsp14A2-B504A504SGctTct33AY.610.000314
ORF1ab/nsp14A2-B504A504SGctTct33AY.90.000203
ORF1ab/nsp14A2-B504A504SGctTct33B.1.1.100.003344
ORF1ab/nsp14A2-B504A504SGctTct33B.1.1820.021739
ORF1ab/nsp14A2-B504A504SGctTct33P.1.140.000143
ORF1ab/nsp14A2-B504A504SGctTct33P.1.70.000958
ORF1ab/nsp14A2-B504A504SGctTct33Q.10.000379
ORF1ab/nsp14A2-B504A504SGctTct33Q.40.001364
ORF1ab/nsp14A2-B504A504SGctTct12A0.000387
ORF1ab/nsp14A2-B504A504SGCTAGC12A0.000387
ORF1ab/nsp14A2-B504A504SGctTct22A.210.00554
ORF1ab/nsp14A2-B504A504SGctTct22AY.1060.00067
ORF1ab/nsp14A2-B504A504SGctTct22AY.1080.002205
ORF1ab/nsp14A2-B504A504SGcTTcA12AY.1100.000113
ORF1ab/nsp14A2-B504A504SGctTct12AY.1100.000113
ORF1ab/nsp14A2-B504A504SGctTct22AY.1190.000071
ORF1ab/nsp14A2-B504A504SGctTct22AY.130.000322
ORF1ab/nsp14A2-B504A504SGctTct22AY.160.000759
ORF1ab/nsp14A2-B504A504SGctTct22AY.46.40.000329
ORF1ab/nsp14A2-B504A504SGctTct22AY.540.000191
ORF1ab/nsp14A2-B504A504SGctTct22AY.730.001331
ORF1ab/nsp14A2-B504A504SGctTct22AY.75.10.000361
ORF1ab/nsp14A2-B504A504SGctTct22AY.840.000875
ORF1ab/nsp14A2-B504A504SGctTct22AY.850.000854
ORF1ab/nsp14A2-B504A504SGctTct22AY.98.10.000097
ORF1ab/nsp14A2-B504A504SGctTct22B.1.1.1610.007067
ORF1ab/nsp14A2-B504A504SGctTct22B.1.1.2160.001781
ORF1ab/nsp14A2-B504A504SGctTct22B.1.1.2220.000408
ORF1ab/nsp14A2-B504A504SGctTct22B.1.1.2320.00363
ORF1ab/nsp14A2-B504A504SGctTct22B.1.1.700.000682
ORF1ab/nsp14A2-B504A504SGctTct22B.1.5260.000047
ORF1ab/nsp14A2-B504A504SGctTct22B.1.5960.000174
ORF1ab/nsp14A2-B504A504SGctTct22B.1.6210.000177
ORF1ab/nsp14A2-B504A504SGctTct22B.1.6270.00404
ORF1ab/nsp14A2-B504A504SGctTct22B.1.6280.000705
ORF1ab/nsp14A2-B504A504SGctTct22B.1.6370.000146
ORF1ab/nsp14A2-B504A504SGctTct22Q.80.00033
ORF1ab/nsp14A2-B504A504SGCtAGt110.055556
ORF1ab/nsp14A2-B504A504SGctTct11A.10.000282
ORF1ab/nsp14A2-B504A504SGctTct11AY.10.000396
ORF1ab/nsp14A2-B504A504SGctTct11AY.1160.000287
ORF1ab/nsp14A2-B504A504SGctTct11AY.1210.000135
ORF1ab/nsp14A2-B504A504SGctTct11AY.340.000097
ORF1ab/nsp14A2-B504A504SGctTct11AY.360.000148
ORF1ab/nsp14A2-B504A504SGctTct11AY.450.000122
ORF1ab/nsp14A2-B504A504SGctTct11AY.46.20.000635
ORF1ab/nsp14A2-B504A504SGctTct11AY.480.000465
ORF1ab/nsp14A2-B504A504SGctTct11AY.5.30.000337
ORF1ab/nsp14A2-B504A504SGctTct11AY.620.000436
ORF1ab/nsp14A2-B504A504SGctTct11AY.710.000475
ORF1ab/nsp14A2-B504A504SGctTct11AY.810.001992
ORF1ab/nsp14A2-B504A504SGctTct11AY.9.10.000084
ORF1ab/nsp14A2-B504A504SGctTct11AY.980.000079
ORF1ab/nsp14A2-B504A504SGctTct11B.1.1.2400.004695
ORF1ab/nsp14A2-B504A504SGctTct11B.1.1.250.000569
ORF1ab/nsp14A2-B504A504SGctTct11B.1.1.2840.000107
ORF1ab/nsp14A2-B504A504SGctTct11B.1.1.3170.000412
ORF1ab/nsp14A2-B504A504SGctTct11B.1.1.370.000193
ORF1ab/nsp14A2-B504A504SGctTct11B.1.1.3980.003226
ORF1ab/nsp14A2-B504A504SGctTct11B.1.1.4340.000349
ORF1ab/nsp14A2-B504A504SGctTct11B.1.1.470.005348
ORF1ab/nsp14A2-B504A504SGctTct11B.1.1.5230.001563
ORF1ab/nsp14A2-B504A504SGctTct11B.1.177.230.003236
ORF1ab/nsp14A2-B504A504SGctTct11B.1.177.730.000566
ORF1ab/nsp14A2-B504A504SGctTct11B.1.177.860.000183
ORF1ab/nsp14A2-B504A504SGctTct11B.1.2100.002132
ORF1ab/nsp14A2-B504A504SGctTct11B.1.2340.000132
ORF1ab/nsp14A2-B504A504SGctTct11B.1.2430.00007
ORF1ab/nsp14A2-B504A504SGCTAGC11B.1.36.10.00114
ORF1ab/nsp14A2-B504A504SGctTct11B.1.36.100.004785
ORF1ab/nsp14A2-B504A504SGctTct11B.1.36.220.001208
ORF1ab/nsp14A2-B504A504SGctTct11B.1.4040.001302
ORF1ab/nsp14A2-B504A504SGctTct11B.1.4280.00102
ORF1ab/nsp14A2-B504A504SGctTct11B.1.438.10.000107
ORF1ab/nsp14A2-B504A504SGctTct11B.1.4560.003268
ORF1ab/nsp14A2-B504A504SGctTct11B.1.5750.000303
ORF1ab/nsp14A2-B504A504SGctTct11B.1.6200.000946
ORF1ab/nsp14A2-B504A504SGctTct11R.10.00009