CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp14A2-B | 274 | A274S | A6199S | nonsyn | Gca | Tca | 4898 | 4898 | 1 | 18859-18861 |
Details of the mutation A274S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 4898 | 4898 | All | 0.000937 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 891 | 891 | B.1.1.279 | 0.998879 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 761 | 761 | AY.120 | 0.028293 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 573 | 573 | AY.4 | 0.000892 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 451 | 451 | B.1.1.7 | 0.000404 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 239 | 239 | B.1.427 | 0.012069 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 189 | 189 | B.1.1 | 0.003429 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 136 | 136 | AY.44 | 0.000828 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 136 | 136 | B.1.617.2 | 0.000512 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 106 | 106 | AY.103 | 0.000658 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 99 | 99 | B.1.177 | 0.001304 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 83 | 83 | B.1 | 0.00076 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 82 | 82 | AY.98.1 | 0.003971 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 64 | 64 | AY.54 | 0.006102 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 64 | 64 | B.1.619.1 | 0.041052 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 54 | 54 | B.1.177.75 | 0.056191 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 50 | 50 | B.1.1.25 | 0.028425 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 44 | 44 | B.1.429 | 0.001035 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 39 | 39 | AY.9.2 | 0.001432 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 36 | 36 | P.1 | 0.000567 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 35 | 35 | AY.43 | 0.000155 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 35 | 35 | B.1.361 | 0.045103 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 32 | 32 | B.1.2 | 0.000282 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 29 | 29 | AY.3 | 0.000288 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 28 | 28 | AY.69 | 0.005227 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 27 | 27 | AF.1 | 1 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 26 | 26 | AY.25 | 0.000156 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 24 | 24 | B.1.561 | 0.009528 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 22 | 22 | AY.117 | 0.001859 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 20 | 20 | D.2 | 0.001501 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 16 | 16 | B.1.1.369 | 0.00714 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 16 | 16 | B.1.36.22 | 0.019324 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 13 | 13 | AY.100 | 0.000598 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 13 | 13 | AY.26 | 0.000368 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 13 | 13 | AY.4.2 | 0.000282 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 12 | 12 | AY.46 | 0.001249 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 12 | 12 | AY.98 | 0.000948 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 12 | 12 | B.1.1.519 | 0.000477 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 10 | 10 | AY.20 | 0.000389 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 10 | 10 | AY.39.1 | 0.000396 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 10 | 10 | B.1.577 | 0.006873 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 10 | 10 | B.1.621.1 | 0.005058 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 10 | 10 | P.2 | 0.001866 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 9 | 9 | AY.23 | 0.000628 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 9 | 9 | B.1.160 | 0.000281 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 9 | 9 | P.1.10 | 0.002425 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 8 | 8 | AY.16 | 0.003037 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 8 | 8 | AY.39 | 0.000198 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 8 | 8 | B.1.177.4 | 0.001688 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 8 | 8 | B.1.596 | 0.000697 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 7 | 7 | AY.33 | 0.000467 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 7 | 7 | AY.45 | 0.000852 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 7 | 7 | AY.46.6 | 0.000505 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 7 | 7 | AY.9 | 0.000473 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 7 | 7 | AY.9.1 | 0.000586 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 7 | 7 | B.1.311 | 0.001922 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 7 | 7 | B.1.575 | 0.002124 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 6 | 6 | AY.102 | 0.000159 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 6 | 6 | AY.121 | 0.000812 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 6 | 6 | B.1.1.526 | 0.021277 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 6 | 6 | B.1.221 | 0.000426 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 6 | 6 | B.1.36 | 0.000875 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 6 | 6 | B.1.526 | 0.000141 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 5 | 5 | AY.29 | 0.000079 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 5 | 5 | AY.42 | 0.000201 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 5 | 5 | AY.5 | 0.000103 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 5 | 5 | AY.88 | 0.004421 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 5 | 5 | B.1.243 | 0.000348 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 5 | 5 | B.1.36.29 | 0.002587 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 5 | 5 | B.1.466.2 | 0.001956 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 5 | 5 | C.30 | 0.008636 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 5 | 5 | Q.2 | 0.003067 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 4 | 4 | AY.120.2 | 0.005141 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 4 | 4 | AY.47 | 0.000124 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 4 | 4 | AY.75 | 0.000224 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 4 | 4 | B.1.1.28 | 0.001245 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 4 | 4 | B.1.258 | 0.000266 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 4 | 4 | B.1.609 | 0.001918 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 4 | 4 | B.1.621 | 0.000354 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 4 | 4 | B.1.628 | 0.001409 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 4 | 4 | C.37 | 0.000464 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 3 | 3 | AY.3.1 | 0.000256 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 3 | 3 | AY.5.3 | 0.001012 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 3 | 3 | AY.6 | 0.000123 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 3 | 3 | AY.99.2 | 0.000276 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 3 | 3 | B | 0.000383 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 3 | 3 | B.1.177.44 | 0.001557 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 3 | 3 | B.1.351 | 0.000089 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 3 | 3 | B.1.36.18 | 0.001261 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 3 | 3 | B.1.371 | 0.003367 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 3 | 3 | B.1.409 | 0.002344 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 2 | 2 | 0.111111 | |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 2 | 2 | AY.1 | 0.000791 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 2 | 2 | AY.16.1 | 0.00094 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 2 | 2 | AY.30 | 0.000791 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 2 | 2 | AY.36 | 0.000296 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 2 | 2 | AY.38 | 0.000999 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 2 | 2 | AY.7.1 | 0.000225 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 2 | 2 | AY.75.1 | 0.000361 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 2 | 2 | AY.84 | 0.000875 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 2 | 2 | AZ.2 | 0.001642 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 2 | 2 | B.1.1.10 | 0.00223 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 2 | 2 | B.1.1.153 | 0.002191 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 2 | 2 | B.1.1.170 | 0.002494 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 2 | 2 | B.1.1.207 | 0.002364 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 2 | 2 | B.1.1.222 | 0.000408 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 2 | 2 | B.1.1.317 | 0.000823 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 2 | 2 | B.1.1.448 | 0.004065 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 2 | 2 | B.1.177.3 | 0.015267 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 2 | 2 | B.1.177.33 | 0.003289 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 2 | 2 | B.1.177.74 | 0.030303 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 2 | 2 | B.1.258.17 | 0.000208 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 2 | 2 | B.1.574 | 0.004301 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 2 | 2 | B.1.582 | 0.000981 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 2 | 2 | B.1.597 | 0.009259 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 2 | 2 | B.1.617.1 | 0.000258 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 2 | 2 | P.1.14 | 0.000096 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 2 | 2 | Q.7 | 0.002222 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 1 | 1 | A.27 | 0.001656 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 1 | 1 | AE.8 | 0.000489 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 1 | 1 | AU.2 | 0.002421 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 1 | 1 | AY.104 | 0.001984 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 1 | 1 | AY.23.1 | 0.000417 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 1 | 1 | AY.41 | 0.000294 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 1 | 1 | AY.5.1 | 0.003759 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 1 | 1 | B.1.1.161 | 0.003534 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 1 | 1 | B.1.1.291 | 0.000742 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 1 | 1 | B.1.1.294 | 0.001266 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 1 | 1 | B.1.1.334 | 0.016393 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 1 | 1 | B.1.1.464 | 0.001473 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 1 | 1 | B.1.1.523 | 0.001563 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 1 | 1 | B.1.108 | 0.005814 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 1 | 1 | B.1.113 | 0.015625 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 1 | 1 | B.1.177.32 | 0.00135 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 1 | 1 | B.1.177.87 | 0.000728 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 1 | 1 | B.1.241 | 0.000812 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 1 | 1 | B.1.281 | 0.021739 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 1 | 1 | B.1.318 | 0.038462 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 1 | 1 | B.1.387 | 0.04 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 1 | 1 | B.1.416.1 | 0.001563 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 1 | 1 | B.1.426 | 0.001009 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 1 | 1 | B.1.467 | 0.04 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 1 | 1 | B.1.470 | 0.001404 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 1 | 1 | B.28 | 0.003279 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 1 | 1 | B.3.1 | 0.001658 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 1 | 1 | C.16 | 0.00106 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 1 | 1 | P.7 | 0.004367 |
ORF1ab/nsp14A2-B | 274 | A274S | Gca | Tca | 1 | 1 | Q.1 | 0.000126 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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