CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp14A2-B : CodonNum = 92

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp14A2-B92E92EE6017EsyngaGgaA29822982118313-18315
ORF1ab/nsp14A2-B92E92del1E6017del1delgaGga-1391380.99280618313-18315
ORF1ab/nsp14A2-B92E92del1E6017del1delgAgg-g13910.0071942418313-18315
ORF1ab/nsp14A2-B92E92DE6017DnonsyngaGgaT15140.93333318313-18315
ORF1ab/nsp14A2-B92E92DE6017DnonsyngaGgaC1510.066666718313-18315
ORF1ab/nsp14A2-B92E92delE6017deldelGAG---1212118313-18315
ORF1ab/nsp14A2-B92E92XE6017XnonsynGagTag1090.918313-18315
ORF1ab/nsp14A2-B92E92XE6017XnonsynGAGTGA1010.118313-18315
ORF1ab/nsp14A2-B92E92GE6017GnonsyngAggGg66118313-18315
ORF1ab/nsp14A2-B92E92KE6017KnonsynGagAag33118313-18315
ORF1ab/nsp14A2-B92E92QE6017QnonsynGagCag22118313-18315
ORF1ab/nsp14A2-B92E92VE6017VnonsyngAGgTA11118313-18315
ORF1ab/nsp14A2-B92E92del2E6017del2delGAg--g11118313-18315

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp14A2-B92E92EgaGgaA29822982All0.00057
ORF1ab/nsp14A2-B92E92EgaGgaA476476B.1.4700.668539
ORF1ab/nsp14A2-B92E92EgaGgaA438438B.1.20.003857
ORF1ab/nsp14A2-B92E92EgaGgaA422422AY.440.002569
ORF1ab/nsp14A2-B92E92EgaGgaA335335B.1.1.70.0003
ORF1ab/nsp14A2-B92E92EgaGgaA225225B.1.4290.005294
ORF1ab/nsp14A2-B92E92del1gaGga-138139All0.000026
ORF1ab/nsp14A2-B92E92del1gAgg-g1139All0
ORF1ab/nsp14A2-B92E92EgaGgaA107107B.1.1.3170.044051
ORF1ab/nsp14A2-B92E92EgaGgaA104104B.1.617.20.000392
ORF1ab/nsp14A2-B92E92EgaGgaA7878AY.40.000121
ORF1ab/nsp14A2-B92E92EgaGgaA6161AY.390.001507
ORF1ab/nsp14A2-B92E92EgaGgaA6060AY.260.001699
ORF1ab/nsp14A2-B92E92EgaGgaA5252AY.30.000517
ORF1ab/nsp14A2-B92E92EgaGgaA4040B.10.000366
ORF1ab/nsp14A2-B92E92del1gaGga-3737B.1.20.000326
ORF1ab/nsp14A2-B92E92EgaGgaA3434AY.430.000151
ORF1ab/nsp14A2-B92E92EgaGgaA3434B.1.36.290.017589
ORF1ab/nsp14A2-B92E92EgaGgaA3333AY.1030.000205
ORF1ab/nsp14A2-B92E92EgaGgaA2525B.1.10.000454
ORF1ab/nsp14A2-B92E92EgaGgaA2525B.1.1.3060.01096
ORF1ab/nsp14A2-B92E92EgaGgaA2020AY.250.00012
ORF1ab/nsp14A2-B92E92del1gaGga-1919AY.440.000116
ORF1ab/nsp14A2-B92E92EgaGgaA1919AY.610.001991
ORF1ab/nsp14A2-B92E92EgaGgaA1919B.1.5260.000447
ORF1ab/nsp14A2-B92E92del1gaGga-1616AY.120.10.005136
ORF1ab/nsp14A2-B92E92EgaGgaA1616P.10.000252
ORF1ab/nsp14A2-B92E92DgaGgaT1415All0.000003
ORF1ab/nsp14A2-B92E92DgaGgaC115All0
ORF1ab/nsp14A2-B92E92EgaGgaA1515B.1.1600.000468
ORF1ab/nsp14A2-B92E92EgaGgaA1313AY.1020.000345
ORF1ab/nsp14A2-B92E92EgaGgaA1313B.1.2580.000865
ORF1ab/nsp14A2-B92E92delGAG---1212All0.000002
ORF1ab/nsp14A2-B92E92del1gaGga-1212AY.1030.000075
ORF1ab/nsp14A2-B92E92EgaGgaA1111B.1.1.4340.003834
ORF1ab/nsp14A2-B92E92EgaGgaA1111B.1.36.170.005435
ORF1ab/nsp14A2-B92E92XGagTag910All0.000002
ORF1ab/nsp14A2-B92E92XGAGTGA110All0
ORF1ab/nsp14A2-B92E92EgaGgaA1010AY.470.000311
ORF1ab/nsp14A2-B92E92EgaGgaA1010B.1.1.2310.03096
ORF1ab/nsp14A2-B92E92EgaGgaA1010B.1.1770.000132
ORF1ab/nsp14A2-B92E92EgaGgaA88AY.330.000534
ORF1ab/nsp14A2-B92E92EgaGgaA88B.1.4270.000404
ORF1ab/nsp14A2-B92E92EgaGgaA77AY.1180.000439
ORF1ab/nsp14A2-B92E92EgaGgaA77B.1.177.550.016317
ORF1ab/nsp14A2-B92E92EgaGgaA77B.1.3510.000208
ORF1ab/nsp14A2-B92E92GgAggGg66All0.000001
ORF1ab/nsp14A2-B92E92EgaGgaA66AY.46.40.000987
ORF1ab/nsp14A2-B92E92EgaGgaA66B0.000767
ORF1ab/nsp14A2-B92E92delGAG---66B.1.1.70.000005
ORF1ab/nsp14A2-B92E92EgaGgaA66B.1.4760.6
ORF1ab/nsp14A2-B92E92del1gaGga-66B.1.617.20.000023
ORF1ab/nsp14A2-B92E92EgaGgaA55AY.1200.000186
ORF1ab/nsp14A2-B92E92EgaGgaA55AY.290.000079
ORF1ab/nsp14A2-B92E92EgaGgaA55B.1.1.1530.005476
ORF1ab/nsp14A2-B92E92EgaGgaA55B.1.1.5190.000199
ORF1ab/nsp14A2-B92E92EgaGgaA55B.1.3980.014881
ORF1ab/nsp14A2-B92E92EgaGgaA55B.1.4020.04902
ORF1ab/nsp14A2-B92E92EgaGgaA55B.1.5380.040323
ORF1ab/nsp14A2-B92E92EgaGgaA55B.1.617.10.000645
ORF1ab/nsp14A2-B92E92EgaGgaA55B.1.6190.004355
ORF1ab/nsp14A2-B92E92del1gaGga-55P.10.000079
ORF1ab/nsp14A2-B92E92EgaGgaA55P.1.140.000239
ORF1ab/nsp14A2-B92E92del1gaGga-440.222222
ORF1ab/nsp14A2-B92E92EgaGgaA44AY.1140.000924
ORF1ab/nsp14A2-B92E92EgaGgaA44AY.50.000083
ORF1ab/nsp14A2-B92E92del1gaGga-44B.1.1.70.000004
ORF1ab/nsp14A2-B92E92EgaGgaA44B.1.177.120.000607
ORF1ab/nsp14A2-B92E92EgaGgaA44B.1.177.600.000874
ORF1ab/nsp14A2-B92E92EgaGgaA44B.6.60.003556
ORF1ab/nsp14A2-B92E92EgaGgaA44D.50.0199
ORF1ab/nsp14A2-B92E92EgaGgaA44P.20.000747
ORF1ab/nsp14A2-B92E92KGagAag33All0.000001
ORF1ab/nsp14A2-B92E92EgaGgaA33AY.200.000117
ORF1ab/nsp14A2-B92E92del1gaGga-33AY.30.00003
ORF1ab/nsp14A2-B92E92EgaGgaA33AY.3.10.000256
ORF1ab/nsp14A2-B92E92EgaGgaA33AY.450.000365
ORF1ab/nsp14A2-B92E92del1gaGga-33AY.470.000093
ORF1ab/nsp14A2-B92E92XGagTag33B.10.000027
ORF1ab/nsp14A2-B92E92EgaGgaA33B.1.1.1610.010601
ORF1ab/nsp14A2-B92E92EgaGgaA33B.1.1.390.001529
ORF1ab/nsp14A2-B92E92del1gaGga-33B.1.2340.000396
ORF1ab/nsp14A2-B92E92EgaGgaA33B.1.2360.00616
ORF1ab/nsp14A2-B92E92EgaGgaA33B.1.2430.000209
ORF1ab/nsp14A2-B92E92EgaGgaA33B.1.258.170.000312
ORF1ab/nsp14A2-B92E92EgaGgaA33B.1.6210.000266
ORF1ab/nsp14A2-B92E92EgaGgaA33P.1.170.000485
ORF1ab/nsp14A2-B92E92EgaGgaA22AE.80.000978
ORF1ab/nsp14A2-B92E92QGagCag22All0
ORF1ab/nsp14A2-B92E92EgaGgaA22AY.100.00106
ORF1ab/nsp14A2-B92E92EgaGgaA22AY.1000.000092
ORF1ab/nsp14A2-B92E92EgaGgaA22AY.1170.000169
ORF1ab/nsp14A2-B92E92EgaGgaA22AY.1190.000071
ORF1ab/nsp14A2-B92E92EgaGgaA22AY.120.000632
ORF1ab/nsp14A2-B92E92del1gaGga-22AY.140.000176
ORF1ab/nsp14A2-B92E92EgaGgaA22AY.16.10.00094
ORF1ab/nsp14A2-B92E92del1gaGga-22AY.200.000078
ORF1ab/nsp14A2-B92E92delGAG---22AY.250.000012
ORF1ab/nsp14A2-B92E92del1gaGga-22AY.250.000012
ORF1ab/nsp14A2-B92E92del1gaGga-22AY.260.000057
ORF1ab/nsp14A2-B92E92del1gaGga-22AY.540.000191
ORF1ab/nsp14A2-B92E92del1gaGga-22AY.620.000871
ORF1ab/nsp14A2-B92E92EgaGgaA22AY.840.000875
ORF1ab/nsp14A2-B92E92EgaGgaA22AY.90.000135
ORF1ab/nsp14A2-B92E92EgaGgaA22AY.9.20.000073
ORF1ab/nsp14A2-B92E92EgaGgaA22AY.920.000575
ORF1ab/nsp14A2-B92E92EgaGgaA22AY.98.10.000097
ORF1ab/nsp14A2-B92E92GgAggGg22B.10.000018
ORF1ab/nsp14A2-B92E92EgaGgaA22B.1.1.10.000653
ORF1ab/nsp14A2-B92E92EgaGgaA22B.1.1.330.000842
ORF1ab/nsp14A2-B92E92DgaGgaT22B.1.1.70.000002
ORF1ab/nsp14A2-B92E92EgaGgaA22B.1.177.70.00033
ORF1ab/nsp14A2-B92E92EgaGgaA22B.1.177.860.000367
ORF1ab/nsp14A2-B92E92XGagTag22B.1.20.000018
ORF1ab/nsp14A2-B92E92EgaGgaA22B.1.5950.000522
ORF1ab/nsp14A2-B92E92EgaGgaA22B.1.5960.000174
ORF1ab/nsp14A2-B92E92DgaGgaT22B.1.5960.000174
ORF1ab/nsp14A2-B92E92EgaGgaA22B.1.6280.000705
ORF1ab/nsp14A2-B92E92EgaGgaA22B.1.6370.000146
ORF1ab/nsp14A2-B92E92DgaGgaT22D.20.00015
ORF1ab/nsp14A2-B92E92EgaGgaA22P.30.00319
ORF1ab/nsp14A2-B92E92VgAGgTA11A0.000387
ORF1ab/nsp14A2-B92E92del2GAg--g11All0
ORF1ab/nsp14A2-B92E92VgAGgTA11All0
ORF1ab/nsp14A2-B92E92DgaGgaT11AY.1030.000006
ORF1ab/nsp14A2-B92E92EgaGgaA11AY.1100.000113
ORF1ab/nsp14A2-B92E92EgaGgaA11AY.1110.000183
ORF1ab/nsp14A2-B92E92del1gaGga-11AY.1130.000142
ORF1ab/nsp14A2-B92E92EgaGgaA11AY.1160.000287
ORF1ab/nsp14A2-B92E92DgaGgaT11AY.116.10.000311
ORF1ab/nsp14A2-B92E92del1gaGga-11AY.1190.000035
ORF1ab/nsp14A2-B92E92DgaGgaT11AY.1210.000135
ORF1ab/nsp14A2-B92E92EgaGgaA11AY.160.00038
ORF1ab/nsp14A2-B92E92EgaGgaA11AY.190.00114
ORF1ab/nsp14A2-B92E92KGagAag11AY.200.000039
ORF1ab/nsp14A2-B92E92EgaGgaA11AY.23.10.000417
ORF1ab/nsp14A2-B92E92EgaGgaA11AY.270.000065
ORF1ab/nsp14A2-B92E92EgaGgaA11AY.340.000097
ORF1ab/nsp14A2-B92E92EgaGgaA11AY.350.000233
ORF1ab/nsp14A2-B92E92EgaGgaA11AY.39.10.00004
ORF1ab/nsp14A2-B92E92XGagTag11AY.40.000002
ORF1ab/nsp14A2-B92E92del1gaGga-11AY.40.000002
ORF1ab/nsp14A2-B92E92delGAG---11AY.40.000002
ORF1ab/nsp14A2-B92E92EgaGgaA11AY.4.20.000022
ORF1ab/nsp14A2-B92E92EgaGgaA11AY.4.2.10.000149
ORF1ab/nsp14A2-B92E92EgaGgaA11AY.4.30.000842
ORF1ab/nsp14A2-B92E92EgaGgaA11AY.4.50.000107
ORF1ab/nsp14A2-B92E92EgaGgaA11AY.410.000294
ORF1ab/nsp14A2-B92E92EgaGgaA11AY.420.00004
ORF1ab/nsp14A2-B92E92del1gaGga-11AY.430.000004
ORF1ab/nsp14A2-B92E92EgaGgaA11AY.460.000104
ORF1ab/nsp14A2-B92E92EgaGgaA11AY.490.003195
ORF1ab/nsp14A2-B92E92QGagCag11AY.590.00053
ORF1ab/nsp14A2-B92E92EgaGgaA11AY.620.000436
ORF1ab/nsp14A2-B92E92EgaGgaA11AY.710.000475
ORF1ab/nsp14A2-B92E92EgaGgaA11AY.790.001211
ORF1ab/nsp14A2-B92E92del1gaGga-11AY.820.001357
ORF1ab/nsp14A2-B92E92EgaGgaA11AY.880.000884
ORF1ab/nsp14A2-B92E92EgaGgaA11AY.930.000273
ORF1ab/nsp14A2-B92E92del1gaGga-11AY.950.000761
ORF1ab/nsp14A2-B92E92EgaGgaA11AY.980.000079
ORF1ab/nsp14A2-B92E92EgaGgaA11AY.99.10.001553
ORF1ab/nsp14A2-B92E92EgaGgaA11AY.99.20.000092
ORF1ab/nsp14A2-B92E92GgAggGg11B0.000128
ORF1ab/nsp14A2-B92E92XGAGTGA11B0.000128
ORF1ab/nsp14A2-B92E92del1gAgg-g11B.10.000009
ORF1ab/nsp14A2-B92E92DgaGgaT11B.10.000009
ORF1ab/nsp14A2-B92E92delGAG---11B.1.10.000018
ORF1ab/nsp14A2-B92E92KGagAag11B.1.1.1530.001095
ORF1ab/nsp14A2-B92E92EgaGgaA11B.1.1.1720.018182
ORF1ab/nsp14A2-B92E92DgaGgaT11B.1.1.1740.003378
ORF1ab/nsp14A2-B92E92EgaGgaA11B.1.1.2160.00089
ORF1ab/nsp14A2-B92E92EgaGgaA11B.1.1.2200.001859
ORF1ab/nsp14A2-B92E92EgaGgaA11B.1.1.280.000311
ORF1ab/nsp14A2-B92E92EgaGgaA11B.1.1.3480.000796
ORF1ab/nsp14A2-B92E92EgaGgaA11B.1.1.3690.000446
ORF1ab/nsp14A2-B92E92DgaGgaT11B.1.1.370.000193
ORF1ab/nsp14A2-B92E92EgaGgaA11B.1.1.370.000193
ORF1ab/nsp14A2-B92E92EgaGgaA11B.1.1.3790.03125
ORF1ab/nsp14A2-B92E92EgaGgaA11B.1.1.500.000679
ORF1ab/nsp14A2-B92E92GgAggGg11B.1.1.5140.038462
ORF1ab/nsp14A2-B92E92GgAggGg11B.1.1.70.000001
ORF1ab/nsp14A2-B92E92EgaGgaA11B.1.1.720.030303
ORF1ab/nsp14A2-B92E92del1gaGga-11B.1.110.30.000718
ORF1ab/nsp14A2-B92E92EgaGgaA11B.1.1390.000733
ORF1ab/nsp14A2-B92E92DgaGgaT11B.1.1770.000013
ORF1ab/nsp14A2-B92E92EgaGgaA11B.1.177.420.000894
ORF1ab/nsp14A2-B92E92EgaGgaA11B.1.177.440.000519
ORF1ab/nsp14A2-B92E92DgaGgaC11B.1.177.650.000665
ORF1ab/nsp14A2-B92E92del1gaGga-11B.1.177.690.001484
ORF1ab/nsp14A2-B92E92del2GAg--g11B.1.20.000009
ORF1ab/nsp14A2-B92E92delGAG---11B.1.20.000009
ORF1ab/nsp14A2-B92E92EgaGgaA11B.1.2100.002132
ORF1ab/nsp14A2-B92E92EgaGgaA11B.1.2140.003663
ORF1ab/nsp14A2-B92E92EgaGgaA11B.1.221.30.000833
ORF1ab/nsp14A2-B92E92EgaGgaA11B.1.2320.000537
ORF1ab/nsp14A2-B92E92EgaGgaA11B.1.2400.000216
ORF1ab/nsp14A2-B92E92EgaGgaA11B.1.258.140.00098
ORF1ab/nsp14A2-B92E92del1gaGga-11B.1.3240.001605
ORF1ab/nsp14A2-B92E92XGagTag11B.1.3510.00003
ORF1ab/nsp14A2-B92E92EgaGgaA11B.1.36.180.00042
ORF1ab/nsp14A2-B92E92EgaGgaA11B.1.36.80.001
ORF1ab/nsp14A2-B92E92EgaGgaA11B.1.3670.000792
ORF1ab/nsp14A2-B92E92del1gaGga-11B.1.3770.004566
ORF1ab/nsp14A2-B92E92del1gaGga-11B.1.4260.001009
ORF1ab/nsp14A2-B92E92KGagAag11B.1.4290.000024
ORF1ab/nsp14A2-B92E92EgaGgaA11B.1.4600.017857
ORF1ab/nsp14A2-B92E92EgaGgaA11B.1.4620.007246
ORF1ab/nsp14A2-B92E92EgaGgaA11B.1.466.20.000391
ORF1ab/nsp14A2-B92E92EgaGgaA11B.1.5170.000427
ORF1ab/nsp14A2-B92E92EgaGgaA11B.1.5230.002451
ORF1ab/nsp14A2-B92E92del1gaGga-11B.1.5260.000024
ORF1ab/nsp14A2-B92E92EgaGgaA11B.1.5750.000303
ORF1ab/nsp14A2-B92E92GgAggGg11B.1.5800.004065
ORF1ab/nsp14A2-B92E92QGagCag11B.1.5960.000087
ORF1ab/nsp14A2-B92E92XGagTag11B.1.5960.000087
ORF1ab/nsp14A2-B92E92delGAG---11B.1.617.20.000004
ORF1ab/nsp14A2-B92E92XGagTag11B.1.617.20.000004
ORF1ab/nsp14A2-B92E92EgaGgaA11B.1.6200.000946
ORF1ab/nsp14A2-B92E92EgaGgaA11B.1.9.50.005682
ORF1ab/nsp14A2-B92E92EgaGgaA11B.400.000364
ORF1ab/nsp14A2-B92E92DgaGgaT11B.6.60.000889
ORF1ab/nsp14A2-B92E92EgaGgaA11C.36.10.004149
ORF1ab/nsp14A2-B92E92del1gaGga-11P.1.120.000484
ORF1ab/nsp14A2-B92E92del1gaGga-11P.1.140.000048
ORF1ab/nsp14A2-B92E92EgaGgaA11P.1.150.000232
ORF1ab/nsp14A2-B92E92EgaGgaA11P.1.70.000319
ORF1ab/nsp14A2-B92E92EgaGgaA11Q.40.000455