CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp14A2-B : CodonNum = 85

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF1ab/nsp14A2-B	85	A85S	A6010S	nonsyn	Gca	Tca	5236	5236	1	18292-18294
ORF1ab/nsp14A2-B	85	A85A	A6010A	syn	gcA	gcG	803	759	0.945205	18292-18294
ORF1ab/nsp14A2-B	85	A85A	A6010A	syn	gcA	gcT	803	32	0.0398506	18292-18294
ORF1ab/nsp14A2-B	85	A85A	A6010A	syn	gcA	gcC	803	12	0.014944	18292-18294
ORF1ab/nsp14A2-B	85	A85T	A6010T	nonsyn	Gca	Aca	21	21	1	18292-18294
ORF1ab/nsp14A2-B	85	A85V	A6010V	nonsyn	gCa	gTa	12	12	1	18292-18294
ORF1ab/nsp14A2-B	85	A85del	A6010del	del	GCA	---	12	12	1	18292-18294
ORF1ab/nsp14A2-B	85	A85E	A6010E	nonsyn	gCa	gAa	6	6	1	18292-18294
ORF1ab/nsp14A2-B	85	A85P	A6010P	nonsyn	Gca	Cca	5	5	1	18292-18294
ORF1ab/nsp14A2-B	85	A85del1	A6010del1	del	gcA	gc-	2	2	1	18292-18294

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF1ab/nsp14A2-B	85	A85S	Gca	Tca	5236	5236	All	0.001001
ORF1ab/nsp14A2-B	85	A85S	Gca	Tca	3825	3825	AY.4	0.005953
ORF1ab/nsp14A2-B	85	A85A	gcA	gcG	759	803	All	0.000145
ORF1ab/nsp14A2-B	85	A85A	gcA	gcT	32	803	All	0.000006
ORF1ab/nsp14A2-B	85	A85A	gcA	gcC	12	803	All	0.000002
ORF1ab/nsp14A2-B	85	A85S	Gca	Tca	477	477	B.1.236	0.979466
ORF1ab/nsp14A2-B	85	A85A	gcA	gcG	215	216	B.1.2	0.001893
ORF1ab/nsp14A2-B	85	A85A	gcA	gcT	1	216	B.1.2	0.000009
ORF1ab/nsp14A2-B	85	A85S	Gca	Tca	150	150	C.2.1	1
ORF1ab/nsp14A2-B	85	A85A	gcA	gcG	104	114	B.1.1.7	0.000093
ORF1ab/nsp14A2-B	85	A85A	gcA	gcT	9	114	B.1.1.7	0.000008
ORF1ab/nsp14A2-B	85	A85A	gcA	gcC	1	114	B.1.1.7	0.000001
ORF1ab/nsp14A2-B	85	A85S	Gca	Tca	98	98	AY.42	0.003943
ORF1ab/nsp14A2-B	85	A85S	Gca	Tca	82	82	B.1.617.2	0.000309
ORF1ab/nsp14A2-B	85	A85A	gcA	gcG	72	73	AY.39	0.001779
ORF1ab/nsp14A2-B	85	A85A	gcA	gcC	1	73	AY.39	0.000025
ORF1ab/nsp14A2-B	85	A85S	Gca	Tca	62	62	B.1.1.7	0.000056
ORF1ab/nsp14A2-B	85	A85S	Gca	Tca	61	61	C.2	0.983871
ORF1ab/nsp14A2-B	85	A85A	gcA	gcG	53	53	AY.29	0.000836
ORF1ab/nsp14A2-B	85	A85S	Gca	Tca	53	53	B.1	0.000485
ORF1ab/nsp14A2-B	85	A85S	Gca	Tca	48	48	AY.43	0.000213
ORF1ab/nsp14A2-B	85	A85A	gcA	gcG	44	47	B.1.617.2	0.000166
ORF1ab/nsp14A2-B	85	A85A	gcA	gcC	3	47	B.1.617.2	0.000011
ORF1ab/nsp14A2-B	85	A85A	gcA	gcG	39	40	B.1.1.519	0.001549
ORF1ab/nsp14A2-B	85	A85A	gcA	gcT	1	40	B.1.1.519	0.00004
ORF1ab/nsp14A2-B	85	A85A	gcA	gcG	30	31	AY.103	0.000186
ORF1ab/nsp14A2-B	85	A85A	gcA	gcT	1	31	AY.103	0.000006
ORF1ab/nsp14A2-B	85	A85S	Gca	Tca	31	31	B.1.118	0.208054
ORF1ab/nsp14A2-B	85	A85A	gcA	gcG	28	28	AY.105	0.018006
ORF1ab/nsp14A2-B	85	A85A	gcA	gcG	19	25	AY.4	0.00003
ORF1ab/nsp14A2-B	85	A85A	gcA	gcT	6	25	AY.4	0.000009
ORF1ab/nsp14A2-B	85	A85S	Gca	Tca	22	22	AY.103	0.000137
ORF1ab/nsp14A2-B	85	A85T	Gca	Aca	21	21	All	0.000004
ORF1ab/nsp14A2-B	85	A85A	gcA	gcG	16	21	AY.25	0.000096
ORF1ab/nsp14A2-B	85	A85A	gcA	gcC	4	21	AY.25	0.000024
ORF1ab/nsp14A2-B	85	A85A	gcA	gcT	1	21	AY.25	0.000006
ORF1ab/nsp14A2-B	85	A85S	Gca	Tca	20	20	AY.39	0.000494
ORF1ab/nsp14A2-B	85	A85S	Gca	Tca	20	20	B.1.160	0.000624
ORF1ab/nsp14A2-B	85	A85A	gcA	gcG	17	17	AY.44	0.000103
ORF1ab/nsp14A2-B	85	A85S	Gca	Tca	16	16	B.1.158	0.380952
ORF1ab/nsp14A2-B	85	A85A	gcA	gcG	14	14	AY.43	0.000062
ORF1ab/nsp14A2-B	85	A85A	gcA	gcG	14	14	B.1.177	0.000184
ORF1ab/nsp14A2-B	85	A85del	GCA	---	12	12	All	0.000002
ORF1ab/nsp14A2-B	85	A85V	gCa	gTa	12	12	All	0.000002
ORF1ab/nsp14A2-B	85	A85S	Gca	Tca	12	12	B.1.526	0.000282
ORF1ab/nsp14A2-B	85	A85S	Gca	Tca	11	11	AY.44	0.000067
ORF1ab/nsp14A2-B	85	A85S	Gca	Tca	11	11	AY.66	0.011765
ORF1ab/nsp14A2-B	85	A85S	Gca	Tca	10	10	AY.25	0.00006
ORF1ab/nsp14A2-B	85	A85S	Gca	Tca	10	10	B.1.1	0.000181
ORF1ab/nsp14A2-B	85	A85S	Gca	Tca	9	9	AY.102	0.000239
ORF1ab/nsp14A2-B	85	A85S	Gca	Tca	9	9	AY.26	0.000255
ORF1ab/nsp14A2-B	85	A85A	gcA	gcG	6	9	AY.3	0.00006
ORF1ab/nsp14A2-B	85	A85A	gcA	gcC	3	9	AY.3	0.00003
ORF1ab/nsp14A2-B	85	A85S	Gca	Tca	9	9	B.1.177.60	0.001966
ORF1ab/nsp14A2-B	85	A85S	Gca	Tca	8	8	AY.46.6	0.000578
ORF1ab/nsp14A2-B	85	A85A	gcA	gcG	8	8	AY.64	0.004762
ORF1ab/nsp14A2-B	85	A85S	Gca	Tca	7	7	B.1.1.1	0.002287
ORF1ab/nsp14A2-B	85	A85T	Gca	Aca	7	7	B.1.1.7	0.000006
ORF1ab/nsp14A2-B	85	A85V	gCa	gTa	7	7	B.1.1.7	0.000006
ORF1ab/nsp14A2-B	85	A85del	GCA	---	7	7	B.1.1.7	0.000006
ORF1ab/nsp14A2-B	85	A85S	Gca	Tca	7	7	B.1.427	0.000353
ORF1ab/nsp14A2-B	85	A85E	gCa	gAa	6	6	All	0.000001
ORF1ab/nsp14A2-B	85	A85S	Gca	Tca	6	6	AY.20	0.000233
ORF1ab/nsp14A2-B	85	A85A	gcA	gcG	6	6	AY.20	0.000233
ORF1ab/nsp14A2-B	85	A85S	Gca	Tca	6	6	B.1.1.70	0.002046
ORF1ab/nsp14A2-B	85	A85S	Gca	Tca	6	6	B.1.177.43	0.008863
ORF1ab/nsp14A2-B	85	A85S	Gca	Tca	6	6	B.1.2	0.000053
ORF1ab/nsp14A2-B	85	A85S	Gca	Tca	6	6	B.1.36	0.000875
ORF1ab/nsp14A2-B	85	A85A	gcA	gcG	6	6	B.1.526	0.000141
ORF1ab/nsp14A2-B	85	A85P	Gca	Cca	5	5	All	0.000001
ORF1ab/nsp14A2-B	85	A85A	gcA	gcG	5	5	AY.102	0.000133
ORF1ab/nsp14A2-B	85	A85S	Gca	Tca	5	5	AY.120.1	0.001605
ORF1ab/nsp14A2-B	85	A85S	Gca	Tca	5	5	AY.37	0.00158
ORF1ab/nsp14A2-B	85	A85A	gcA	gcG	4	5	B.1	0.000037
ORF1ab/nsp14A2-B	85	A85A	gcA	gcT	1	5	B.1	0.000009
ORF1ab/nsp14A2-B	85	A85S	Gca	Tca	5	5	B.1.177	0.000066
ORF1ab/nsp14A2-B	85	A85S	Gca	Tca	4	4	AY.3	0.00004
ORF1ab/nsp14A2-B	85	A85A	gcA	gcG	3	4	AY.42	0.000121
ORF1ab/nsp14A2-B	85	A85A	gcA	gcT	1	4	AY.42	0.00004
ORF1ab/nsp14A2-B	85	A85E	gCa	gAa	4	4	B.1	0.000037
ORF1ab/nsp14A2-B	85	A85A	gcA	gcG	4	4	B.1.1.372	0.002755
ORF1ab/nsp14A2-B	85	A85A	gcA	gcG	4	4	B.1.240	0.000862
ORF1ab/nsp14A2-B	85	A85A	gcA	gcT	4	4	C.23	0.023256
ORF1ab/nsp14A2-B	85	A85A	gcA	gcG	4	4	C.35	0.003096
ORF1ab/nsp14A2-B	85	A85S	Gca	Tca	4	4	P.1	0.000063
ORF1ab/nsp14A2-B	85	A85A	gcA	gcG	3	3	AY.46	0.000312
ORF1ab/nsp14A2-B	85	A85S	Gca	Tca	3	3	AY.53	0.000863
ORF1ab/nsp14A2-B	85	A85S	Gca	Tca	3	3	AY.68	0.000821
ORF1ab/nsp14A2-B	85	A85S	Gca	Tca	3	3	B.1.351	0.000089
ORF1ab/nsp14A2-B	85	A85S	Gca	Tca	3	3	B.1.36.8	0.003
ORF1ab/nsp14A2-B	85	A85A	gcA	gcG	2	3	B.1.429	0.000047
ORF1ab/nsp14A2-B	85	A85A	gcA	gcT	1	3	B.1.429	0.000024
ORF1ab/nsp14A2-B	85	A85S	Gca	Tca	3	3	B.1.621	0.000266
ORF1ab/nsp14A2-B	85	A85S	Gca	Tca	2	2	AE.1	0.022727
ORF1ab/nsp14A2-B	85	A85del1	gcA	gc-	2	2	All	0
ORF1ab/nsp14A2-B	85	A85S	Gca	Tca	2	2	AY.113	0.000285
ORF1ab/nsp14A2-B	85	A85A	gcA	gcG	2	2	AY.16	0.000759
ORF1ab/nsp14A2-B	85	A85S	Gca	Tca	2	2	AY.23	0.000139
ORF1ab/nsp14A2-B	85	A85del	GCA	---	2	2	AY.25	0.000012
ORF1ab/nsp14A2-B	85	A85S	Gca	Tca	2	2	AY.33	0.000134
ORF1ab/nsp14A2-B	85	A85A	gcA	gcG	1	2	AY.33	0.000067
ORF1ab/nsp14A2-B	85	A85A	gcA	gcT	1	2	AY.33	0.000067
ORF1ab/nsp14A2-B	85	A85S	Gca	Tca	2	2	AY.4.2	0.000043
ORF1ab/nsp14A2-B	85	A85T	Gca	Aca	2	2	AY.44	0.000012
ORF1ab/nsp14A2-B	85	A85A	gcA	gcG	2	2	AY.45	0.000243
ORF1ab/nsp14A2-B	85	A85A	gcA	gcG	2	2	AY.61	0.00021
ORF1ab/nsp14A2-B	85	A85S	Gca	Tca	2	2	AY.7.1	0.000225
ORF1ab/nsp14A2-B	85	A85S	Gca	Tca	2	2	AY.9	0.000135
ORF1ab/nsp14A2-B	85	A85A	gcA	gcG	2	2	AY.9.2	0.000073
ORF1ab/nsp14A2-B	85	A85A	gcA	gcG	2	2	AY.99.2	0.000184
ORF1ab/nsp14A2-B	85	A85S	Gca	Tca	2	2	AY.99.2	0.000184
ORF1ab/nsp14A2-B	85	A85A	gcA	gcG	2	2	AZ.1	0.001735
ORF1ab/nsp14A2-B	85	A85S	Gca	Tca	2	2	B	0.000256
ORF1ab/nsp14A2-B	85	A85P	Gca	Cca	2	2	B	0.000256
ORF1ab/nsp14A2-B	85	A85V	gCa	gTa	2	2	B.1.1	0.000036
ORF1ab/nsp14A2-B	85	A85S	Gca	Tca	2	2	B.1.1.153	0.002191
ORF1ab/nsp14A2-B	85	A85S	Gca	Tca	2	2	B.1.1.28	0.000622
ORF1ab/nsp14A2-B	85	A85S	Gca	Tca	2	2	B.1.1.306	0.000877
ORF1ab/nsp14A2-B	85	A85S	Gca	Tca	2	2	B.1.1.50	0.001358
ORF1ab/nsp14A2-B	85	A85S	Gca	Tca	2	2	B.1.147	0.001512
ORF1ab/nsp14A2-B	85	A85S	Gca	Tca	2	2	B.1.177.23	0.006472
ORF1ab/nsp14A2-B	85	A85A	gcA	gcG	2	2	B.1.258	0.000133
ORF1ab/nsp14A2-B	85	A85A	gcA	gcT	2	2	B.1.422	0.001625
ORF1ab/nsp14A2-B	85	A85T	Gca	Aca	2	2	B.1.429	0.000047
ORF1ab/nsp14A2-B	85	A85S	Gca	Tca	2	2	B.1.459	0.008163
ORF1ab/nsp14A2-B	85	A85S	Gca	Tca	2	2	B.1.525	0.000226
ORF1ab/nsp14A2-B	85	A85S	Gca	Tca	2	2	B.1.621.1	0.001012
ORF1ab/nsp14A2-B	85	A85S	Gca	Tca	2	2	B.1.623	0.001073
ORF1ab/nsp14A2-B	85	A85S	Gca	Tca	2	2	C.35	0.001548
ORF1ab/nsp14A2-B	85	A85S	Gca	Tca	2	2	L.3	0.007092
ORF1ab/nsp14A2-B	85	A85A	gcA	gcG	2	2	P.1	0.000032
ORF1ab/nsp14A2-B	85	A85V	gCa	gTa	1	1	A.2	0.000662
ORF1ab/nsp14A2-B	85	A85S	Gca	Tca	1	1	A.2.5.2	0.001572
ORF1ab/nsp14A2-B	85	A85S	Gca	Tca	1	1	AY.100	0.000046
ORF1ab/nsp14A2-B	85	A85S	Gca	Tca	1	1	AY.116	0.000287
ORF1ab/nsp14A2-B	85	A85A	gcA	gcG	1	1	AY.117	0.000085
ORF1ab/nsp14A2-B	85	A85S	Gca	Tca	1	1	AY.117	0.000085
ORF1ab/nsp14A2-B	85	A85A	gcA	gcG	1	1	AY.118	0.000063
ORF1ab/nsp14A2-B	85	A85S	Gca	Tca	1	1	AY.12	0.000316
ORF1ab/nsp14A2-B	85	A85S	Gca	Tca	1	1	AY.120	0.000037
ORF1ab/nsp14A2-B	85	A85A	gcA	gcG	1	1	AY.120	0.000037
ORF1ab/nsp14A2-B	85	A85T	Gca	Aca	1	1	AY.120.1	0.000321
ORF1ab/nsp14A2-B	85	A85A	gcA	gcG	1	1	AY.120.1	0.000321
ORF1ab/nsp14A2-B	85	A85T	Gca	Aca	1	1	AY.20	0.000039
ORF1ab/nsp14A2-B	85	A85S	Gca	Tca	1	1	AY.22	0.002092
ORF1ab/nsp14A2-B	85	A85A	gcA	gcG	1	1	AY.23	0.00007
ORF1ab/nsp14A2-B	85	A85A	gcA	gcG	1	1	AY.23.1	0.000417
ORF1ab/nsp14A2-B	85	A85T	Gca	Aca	1	1	AY.25	0.000006
ORF1ab/nsp14A2-B	85	A85S	Gca	Tca	1	1	AY.29	0.000016
ORF1ab/nsp14A2-B	85	A85T	Gca	Aca	1	1	AY.3	0.00001
ORF1ab/nsp14A2-B	85	A85S	Gca	Tca	1	1	AY.36	0.000148
ORF1ab/nsp14A2-B	85	A85S	Gca	Tca	1	1	AY.39.1	0.00004
ORF1ab/nsp14A2-B	85	A85del	GCA	---	1	1	AY.4	0.000002
ORF1ab/nsp14A2-B	85	A85A	gcA	gcT	1	1	AY.4.2	0.000022
ORF1ab/nsp14A2-B	85	A85S	Gca	Tca	1	1	AY.4.2.1	0.000149
ORF1ab/nsp14A2-B	85	A85S	Gca	Tca	1	1	AY.4.5	0.000107
ORF1ab/nsp14A2-B	85	A85P	Gca	Cca	1	1	AY.43	0.000004
ORF1ab/nsp14A2-B	85	A85del1	gcA	gc-	1	1	AY.44	0.000006
ORF1ab/nsp14A2-B	85	A85S	Gca	Tca	1	1	AY.45	0.000122
ORF1ab/nsp14A2-B	85	A85A	gcA	gcG	1	1	AY.46.2	0.000635
ORF1ab/nsp14A2-B	85	A85S	Gca	Tca	1	1	AY.5	0.000021
ORF1ab/nsp14A2-B	85	A85A	gcA	gcG	1	1	AY.5	0.000021
ORF1ab/nsp14A2-B	85	A85S	Gca	Tca	1	1	AY.5.4	0.000277
ORF1ab/nsp14A2-B	85	A85T	Gca	Aca	1	1	AY.55	0.000917
ORF1ab/nsp14A2-B	85	A85S	Gca	Tca	1	1	AY.6	0.000041
ORF1ab/nsp14A2-B	85	A85S	Gca	Tca	1	1	AY.61	0.000105
ORF1ab/nsp14A2-B	85	A85S	Gca	Tca	1	1	AY.63	0.000387
ORF1ab/nsp14A2-B	85	A85A	gcA	gcG	1	1	AY.67	0.000464
ORF1ab/nsp14A2-B	85	A85A	gcA	gcG	1	1	AY.70	0.000209
ORF1ab/nsp14A2-B	85	A85S	Gca	Tca	1	1	AY.75	0.000056
ORF1ab/nsp14A2-B	85	A85S	Gca	Tca	1	1	AY.75.1	0.00018
ORF1ab/nsp14A2-B	85	A85S	Gca	Tca	1	1	AY.80	0.001129
ORF1ab/nsp14A2-B	85	A85S	Gca	Tca	1	1	AY.86	0.00083
ORF1ab/nsp14A2-B	85	A85A	gcA	gcG	1	1	AY.9.1	0.000084
ORF1ab/nsp14A2-B	85	A85S	Gca	Tca	1	1	AY.90	0.000684
ORF1ab/nsp14A2-B	85	A85S	Gca	Tca	1	1	AY.98	0.000079
ORF1ab/nsp14A2-B	85	A85S	Gca	Tca	1	1	AY.98.1	0.000048
ORF1ab/nsp14A2-B	85	A85del	GCA	---	1	1	B.1.1	0.000018
ORF1ab/nsp14A2-B	85	A85A	gcA	gcG	1	1	B.1.1	0.000018
ORF1ab/nsp14A2-B	85	A85S	Gca	Tca	1	1	B.1.1.161	0.003534
ORF1ab/nsp14A2-B	85	A85S	Gca	Tca	1	1	B.1.1.214	0.000055
ORF1ab/nsp14A2-B	85	A85A	gcA	gcG	1	1	B.1.1.214	0.000055
ORF1ab/nsp14A2-B	85	A85del	GCA	---	1	1	B.1.1.236	0.006897
ORF1ab/nsp14A2-B	85	A85S	Gca	Tca	1	1	B.1.1.274	0.005051
ORF1ab/nsp14A2-B	85	A85S	Gca	Tca	1	1	B.1.1.317	0.000412
ORF1ab/nsp14A2-B	85	A85S	Gca	Tca	1	1	B.1.1.33	0.000421
ORF1ab/nsp14A2-B	85	A85A	gcA	gcT	1	1	B.1.1.348	0.000796
ORF1ab/nsp14A2-B	85	A85S	Gca	Tca	1	1	B.1.1.348	0.000796
ORF1ab/nsp14A2-B	85	A85S	Gca	Tca	1	1	B.1.1.37	0.000193
ORF1ab/nsp14A2-B	85	A85S	Gca	Tca	1	1	B.1.1.39	0.00051
ORF1ab/nsp14A2-B	85	A85S	Gca	Tca	1	1	B.1.1.448	0.002033
ORF1ab/nsp14A2-B	85	A85S	Gca	Tca	1	1	B.1.1.83	0.00271
ORF1ab/nsp14A2-B	85	A85E	gCa	gAa	1	1	B.1.110	0.004525
ORF1ab/nsp14A2-B	85	A85S	Gca	Tca	1	1	B.1.126	0.001276
ORF1ab/nsp14A2-B	85	A85S	Gca	Tca	1	1	B.1.146	0.004237
ORF1ab/nsp14A2-B	85	A85T	Gca	Aca	1	1	B.1.177	0.000013
ORF1ab/nsp14A2-B	85	A85A	gcA	gcG	1	1	B.1.177.38	0.010417
ORF1ab/nsp14A2-B	85	A85S	Gca	Tca	1	1	B.1.177.4	0.000211
ORF1ab/nsp14A2-B	85	A85S	Gca	Tca	1	1	B.1.177.42	0.000894
ORF1ab/nsp14A2-B	85	A85S	Gca	Tca	1	1	B.1.177.44	0.000519
ORF1ab/nsp14A2-B	85	A85S	Gca	Tca	1	1	B.1.177.53	0.002392
ORF1ab/nsp14A2-B	85	A85A	gcA	gcG	1	1	B.1.177.7	0.000165
ORF1ab/nsp14A2-B	85	A85S	Gca	Tca	1	1	B.1.177.7	0.000165
ORF1ab/nsp14A2-B	85	A85V	gCa	gTa	1	1	B.1.177.73	0.000566
ORF1ab/nsp14A2-B	85	A85del1	gcA	gc-	1	1	B.1.2	0.000009
ORF1ab/nsp14A2-B	85	A85T	Gca	Aca	1	1	B.1.2	0.000009
ORF1ab/nsp14A2-B	85	A85S	Gca	Tca	1	1	B.1.221	0.000071
ORF1ab/nsp14A2-B	85	A85S	Gca	Tca	1	1	B.1.233	0.014085
ORF1ab/nsp14A2-B	85	A85S	Gca	Tca	1	1	B.1.243	0.00007
ORF1ab/nsp14A2-B	85	A85T	Gca	Aca	1	1	B.1.351	0.00003
ORF1ab/nsp14A2-B	85	A85A	gcA	gcG	1	1	B.1.351	0.00003
ORF1ab/nsp14A2-B	85	A85A	gcA	gcG	1	1	B.1.36.18	0.00042
ORF1ab/nsp14A2-B	85	A85A	gcA	gcG	1	1	B.1.36.29	0.000517
ORF1ab/nsp14A2-B	85	A85S	Gca	Tca	1	1	B.1.36.39	0.002217
ORF1ab/nsp14A2-B	85	A85V	gCa	gTa	1	1	B.1.369	0.000285
ORF1ab/nsp14A2-B	85	A85S	Gca	Tca	1	1	B.1.398	0.002976
ORF1ab/nsp14A2-B	85	A85S	Gca	Tca	1	1	B.1.404	0.001302
ORF1ab/nsp14A2-B	85	A85S	Gca	Tca	1	1	B.1.438.1	0.000107
ORF1ab/nsp14A2-B	85	A85S	Gca	Tca	1	1	B.1.466	0.023256
ORF1ab/nsp14A2-B	85	A85S	Gca	Tca	1	1	B.1.538	0.008065
ORF1ab/nsp14A2-B	85	A85A	gcA	gcT	1	1	B.1.561	0.000397
ORF1ab/nsp14A2-B	85	A85S	Gca	Tca	1	1	B.1.587	0.001898
ORF1ab/nsp14A2-B	85	A85S	Gca	Tca	1	1	B.1.588.1	0.038462
ORF1ab/nsp14A2-B	85	A85A	gcA	gcG	1	1	B.1.596	0.000087
ORF1ab/nsp14A2-B	85	A85S	Gca	Tca	1	1	B.1.617.1	0.000129
ORF1ab/nsp14A2-B	85	A85T	Gca	Aca	1	1	B.1.617.2	0.000004
ORF1ab/nsp14A2-B	85	A85P	Gca	Cca	1	1	B.1.617.2	0.000004
ORF1ab/nsp14A2-B	85	A85A	gcA	gcG	1	1	B.1.621	0.000089
ORF1ab/nsp14A2-B	85	A85S	Gca	Tca	1	1	B.1.628	0.000352
ORF1ab/nsp14A2-B	85	A85A	gcA	gcG	1	1	B.1.637	0.000073
ORF1ab/nsp14A2-B	85	A85T	Gca	Aca	1	1	B.6	0.00091
ORF1ab/nsp14A2-B	85	A85S	Gca	Tca	1	1	C.37	0.000116
ORF1ab/nsp14A2-B	85	A85P	Gca	Cca	1	1	D.2	0.000075
ORF1ab/nsp14A2-B	85	A85S	Gca	Tca	1	1	D.2	0.000075
ORF1ab/nsp14A2-B	85	A85E	gCa	gAa	1	1	P.1.1	0.000318
ORF1ab/nsp14A2-B	85	A85S	Gca	Tca	1	1	P.1.10	0.000269
ORF1ab/nsp14A2-B	85	A85A	gcA	gcG	1	1	R.1	0.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.