CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp14A2-B : CodonNum = 81

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp14A2-B81R81KR6006KnonsynaGaaAa295295118280-18282
ORF1ab/nsp14A2-B81R81RR6006RsynagAagG2672380.89138618280-18282
ORF1ab/nsp14A2-B81R81RR6006RsynAgaCga267290.10861418280-18282
ORF1ab/nsp14A2-B81R81IR6006InonsynaGaaTa1151140.99130418280-18282
ORF1ab/nsp14A2-B81R81IR6006InonsynaGAaTC11510.0086956518280-18282
ORF1ab/nsp14A2-B81R81GR6006GnonsynAgaGga6666118280-18282
ORF1ab/nsp14A2-B81R81SR6006SnonsynagAagC30280.93333318280-18282
ORF1ab/nsp14A2-B81R81SR6006SnonsynagAagT3020.066666718280-18282
ORF1ab/nsp14A2-B81R81delR6006deldelAGA---1414118280-18282
ORF1ab/nsp14A2-B81R81TR6006TnonsynaGaaCa55118280-18282
ORF1ab/nsp14A2-B81R81XR6006XnonsynAgaTga33118280-18282
ORF1ab/nsp14A2-B81R81del2R6006del2delAGa--a22118280-18282
ORF1ab/nsp14A2-B81R81PR6006PnonsynAGACCC22118280-18282

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp14A2-B81R81KaGaaAa295295All0.000056
ORF1ab/nsp14A2-B81R81RagAagG238267All0.000046
ORF1ab/nsp14A2-B81R81RAgaCga29267All0.000006
ORF1ab/nsp14A2-B81R81RagAagG136136B.1.1.5190.005401
ORF1ab/nsp14A2-B81R81KaGaaAa123123B.1.1.3510.343575
ORF1ab/nsp14A2-B81R81IaGaaTa114115All0.000022
ORF1ab/nsp14A2-B81R81IaGAaTC1115All0
ORF1ab/nsp14A2-B81R81RagAagG6074B.1.1.70.000054
ORF1ab/nsp14A2-B81R81RAgaCga1474B.1.1.70.000013
ORF1ab/nsp14A2-B81R81IaGaaTa7070AY.40.000109
ORF1ab/nsp14A2-B81R81GAgaGga6666All0.000013
ORF1ab/nsp14A2-B81R81KaGaaAa5353B.1.1.70.000047
ORF1ab/nsp14A2-B81R81SagAagC2830All0.000005
ORF1ab/nsp14A2-B81R81SagAagT230All0
ORF1ab/nsp14A2-B81R81SagAagC2425B.1.1.70.000021
ORF1ab/nsp14A2-B81R81SagAagT125B.1.1.70.000001
ORF1ab/nsp14A2-B81R81GAgaGga2525C.370.002902
ORF1ab/nsp14A2-B81R81KaGaaAa1919B.1.3100.904762
ORF1ab/nsp14A2-B81R81delAGA---1414All0.000003
ORF1ab/nsp14A2-B81R81KaGaaAa1414B.1.20.000123
ORF1ab/nsp14A2-B81R81KaGaaAa1212AY.40.000019
ORF1ab/nsp14A2-B81R81RagAagG1212B.1.1.630.00463
ORF1ab/nsp14A2-B81R81delAGA---88B.1.1.70.000007
ORF1ab/nsp14A2-B81R81KaGaaAa77AY.1030.000043
ORF1ab/nsp14A2-B81R81GAgaGga66AY.250.000036
ORF1ab/nsp14A2-B81R81GAgaGga66B.1.1.70.000005
ORF1ab/nsp14A2-B81R81RAgaCga46B.1.4270.000202
ORF1ab/nsp14A2-B81R81RagAagG26B.1.4270.000101
ORF1ab/nsp14A2-B81R81KaGaaAa66R.10.00054
ORF1ab/nsp14A2-B81R81TaGaaCa55All0.000001
ORF1ab/nsp14A2-B81R81GAgaGga55AY.40.000008
ORF1ab/nsp14A2-B81R81IaGaaTa55AY.680.001369
ORF1ab/nsp14A2-B81R81IaGaaTa55B.10.000046
ORF1ab/nsp14A2-B81R81RAgaCga45B.1.1600.000125
ORF1ab/nsp14A2-B81R81RagAagG15B.1.1600.000031
ORF1ab/nsp14A2-B81R81IaGaaTa44AY.430.000018
ORF1ab/nsp14A2-B81R81KaGaaAa44B.10.000037
ORF1ab/nsp14A2-B81R81KaGaaAa44B.1.2210.000284
ORF1ab/nsp14A2-B81R81GAgaGga44B.1.2210.000284
ORF1ab/nsp14A2-B81R81GAgaGga44B.1.4510.032787
ORF1ab/nsp14A2-B81R81RagAagG34P.10.000047
ORF1ab/nsp14A2-B81R81RAgaCga14P.10.000016
ORF1ab/nsp14A2-B81R81XAgaTga33All0.000001
ORF1ab/nsp14A2-B81R81KaGaaAa33AY.1020.00008
ORF1ab/nsp14A2-B81R81KaGaaAa33AY.30.00003
ORF1ab/nsp14A2-B81R81RagAagG33AY.40.000005
ORF1ab/nsp14A2-B81R81IaGaaTa33AY.4.50.000322
ORF1ab/nsp14A2-B81R81KaGaaAa33AY.430.000013
ORF1ab/nsp14A2-B81R81KaGaaAa33AY.480.001395
ORF1ab/nsp14A2-B81R81KaGaaAa33AY.98.10.000145
ORF1ab/nsp14A2-B81R81RagAagG33B.1.1.5260.010638
ORF1ab/nsp14A2-B81R81KaGaaAa33B.1.5770.002062
ORF1ab/nsp14A2-B81R81IaGaaTa33D.20.000225
ORF1ab/nsp14A2-B81R81PAGACCC22All0
ORF1ab/nsp14A2-B81R81del2AGa--a22All0
ORF1ab/nsp14A2-B81R81RagAagG22AY.1020.000053
ORF1ab/nsp14A2-B81R81SagAagC22AY.1030.000012
ORF1ab/nsp14A2-B81R81GAgaGga22AY.1030.000012
ORF1ab/nsp14A2-B81R81RagAagG22AY.1030.000012
ORF1ab/nsp14A2-B81R81KaGaaAa22AY.250.000012
ORF1ab/nsp14A2-B81R81delAGA---22AY.250.000012
ORF1ab/nsp14A2-B81R81KaGaaAa22AY.260.000057
ORF1ab/nsp14A2-B81R81KaGaaAa22AY.39.10.000079
ORF1ab/nsp14A2-B81R81RagAagG22AY.440.000012
ORF1ab/nsp14A2-B81R81RAgaCga22AY.46.30.001867
ORF1ab/nsp14A2-B81R81RagAagG22AY.740.000231
ORF1ab/nsp14A2-B81R81IaGaaTa22AY.90.000135
ORF1ab/nsp14A2-B81R81PAGACCC22B0.000256
ORF1ab/nsp14A2-B81R81IaGaaTa22B0.000256
ORF1ab/nsp14A2-B81R81GAgaGga22B.10.000018
ORF1ab/nsp14A2-B81R81TaGaaCa22B.10.000018
ORF1ab/nsp14A2-B81R81RagAagG22B.1.10.000036
ORF1ab/nsp14A2-B81R81KaGaaAa22B.1.1.3930.222222
ORF1ab/nsp14A2-B81R81GAgaGga22B.1.1770.000026
ORF1ab/nsp14A2-B81R81IaGaaTa12B.1.20.000009
ORF1ab/nsp14A2-B81R81IaGAaTC12B.1.20.000009
ORF1ab/nsp14A2-B81R81GAgaGga22B.1.2100.004264
ORF1ab/nsp14A2-B81R81KaGaaAa22B.1.3510.000059
ORF1ab/nsp14A2-B81R81IaGaaTa22B.1.5950.000522
ORF1ab/nsp14A2-B81R81GAgaGga22B.1.617.20.000008
ORF1ab/nsp14A2-B81R81RAgaCga12B.1.617.20.000004
ORF1ab/nsp14A2-B81R81RagAagG12B.1.617.20.000004
ORF1ab/nsp14A2-B81R81KaGaaAa22P.10.000032
ORF1ab/nsp14A2-B81R81SagAagC22P.1.20.002312
ORF1ab/nsp14A2-B81R81KaGaaAa22P.1.70.000639
ORF1ab/nsp14A2-B81R81IaGaaTa11A0.000387
ORF1ab/nsp14A2-B81R81KaGaaAa11AT.10.005128
ORF1ab/nsp14A2-B81R81KaGaaAa11AY.1000.000046
ORF1ab/nsp14A2-B81R81GAgaGga11AY.1190.000035
ORF1ab/nsp14A2-B81R81IaGaaTa11AY.120.000316
ORF1ab/nsp14A2-B81R81IaGaaTa11AY.1200.000037
ORF1ab/nsp14A2-B81R81RAgaCga11AY.140.000088
ORF1ab/nsp14A2-B81R81RagAagG11AY.200.000039
ORF1ab/nsp14A2-B81R81KaGaaAa11AY.200.000039
ORF1ab/nsp14A2-B81R81RagAagG11AY.260.000028
ORF1ab/nsp14A2-B81R81KaGaaAa11AY.290.000016
ORF1ab/nsp14A2-B81R81IaGaaTa11AY.30.00001
ORF1ab/nsp14A2-B81R81KaGaaAa11AY.330.000067
ORF1ab/nsp14A2-B81R81delAGA---11AY.40.000002
ORF1ab/nsp14A2-B81R81RagAagG11AY.430.000004
ORF1ab/nsp14A2-B81R81IaGaaTa11AY.440.000006
ORF1ab/nsp14A2-B81R81KaGaaAa11AY.440.000006
ORF1ab/nsp14A2-B81R81GAgaGga11AY.440.000006
ORF1ab/nsp14A2-B81R81GAgaGga11AY.450.000122
ORF1ab/nsp14A2-B81R81KaGaaAa11AY.460.000104
ORF1ab/nsp14A2-B81R81RagAagG11AY.46.40.000165
ORF1ab/nsp14A2-B81R81IaGaaTa11AY.520.000814
ORF1ab/nsp14A2-B81R81IaGaaTa11AY.580.000907
ORF1ab/nsp14A2-B81R81IaGaaTa11AY.80.000606
ORF1ab/nsp14A2-B81R81RAgaCga11AY.9.20.000037
ORF1ab/nsp14A2-B81R81IaGaaTa11AY.98.10.000048
ORF1ab/nsp14A2-B81R81KaGaaAa11AY.99.20.000092
ORF1ab/nsp14A2-B81R81XAgaTga11B0.000128
ORF1ab/nsp14A2-B81R81delAGA---11B0.000128
ORF1ab/nsp14A2-B81R81XAgaTga11B.10.000009
ORF1ab/nsp14A2-B81R81SagAagT11B.10.000009
ORF1ab/nsp14A2-B81R81TaGaaCa11B.1.10.000018
ORF1ab/nsp14A2-B81R81delAGA---11B.1.10.000018
ORF1ab/nsp14A2-B81R81KaGaaAa11B.1.10.000018
ORF1ab/nsp14A2-B81R81delAGA---11B.1.1.1390.022727
ORF1ab/nsp14A2-B81R81KaGaaAa11B.1.1.3060.000438
ORF1ab/nsp14A2-B81R81TaGaaCa11B.1.1.3750.011905
ORF1ab/nsp14A2-B81R81KaGaaAa11B.1.1.5190.00004
ORF1ab/nsp14A2-B81R81IaGaaTa11B.1.1.570.011494
ORF1ab/nsp14A2-B81R81del2AGa--a11B.1.1.70.000001
ORF1ab/nsp14A2-B81R81IaGaaTa11B.1.1.70.000001
ORF1ab/nsp14A2-B81R81IaGaaTa11B.1.1600.000031
ORF1ab/nsp14A2-B81R81RAgaCga11B.1.1770.000013
ORF1ab/nsp14A2-B81R81KaGaaAa11B.1.177.190.001431
ORF1ab/nsp14A2-B81R81RagAagG11B.1.177.210.000076
ORF1ab/nsp14A2-B81R81KaGaaAa11B.1.2320.000537
ORF1ab/nsp14A2-B81R81KaGaaAa11B.1.2340.000132
ORF1ab/nsp14A2-B81R81IaGaaTa11B.1.3010.005917
ORF1ab/nsp14A2-B81R81GAgaGga11B.1.3110.000275
ORF1ab/nsp14A2-B81R81IaGaaTa11B.1.3130.006579
ORF1ab/nsp14A2-B81R81GAgaGga11B.1.360.000146
ORF1ab/nsp14A2-B81R81RagAagG11B.1.360.000146
ORF1ab/nsp14A2-B81R81RagAagG11B.1.4290.000024
ORF1ab/nsp14A2-B81R81GAgaGga11B.1.5260.000024
ORF1ab/nsp14A2-B81R81IaGaaTa11B.1.5460.003704
ORF1ab/nsp14A2-B81R81KaGaaAa11B.1.617.20.000004
ORF1ab/nsp14A2-B81R81del2AGa--a11B.1.617.20.000004
ORF1ab/nsp14A2-B81R81XAgaTga11B.1.617.20.000004
ORF1ab/nsp14A2-B81R81KaGaaAa11B.1.6210.000089
ORF1ab/nsp14A2-B81R81IaGaaTa11B.1.6230.000536
ORF1ab/nsp14A2-B81R81IaGaaTa11B.230.002924
ORF1ab/nsp14A2-B81R81KaGaaAa11B.520.010101
ORF1ab/nsp14A2-B81R81KaGaaAa11P.1.120.000484
ORF1ab/nsp14A2-B81R81KaGaaAa11P.1.140.000048
ORF1ab/nsp14A2-B81R81KaGaaAa11P.1.150.000232
ORF1ab/nsp14A2-B81R81KaGaaAa11Q.30.000145
ORF1ab/nsp14A2-B81R81TaGaaCa11R.10.00009