CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp14A2-B : CodonNum = 64

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp14A2-B64Y64YY5989YsyntaTtaC23062306118229-18231
ORF1ab/nsp14A2-B64Y64CY5989CnonsyntAttGt99960.96969718229-18231
ORF1ab/nsp14A2-B64Y64CY5989CnonsyntATtGC9930.03030318229-18231
ORF1ab/nsp14A2-B64Y64HY5989HnonsynTatCat2828118229-18231
ORF1ab/nsp14A2-B64Y64delY5989deldelTAT---1919118229-18231
ORF1ab/nsp14A2-B64Y64FY5989FnonsyntAttTt1212118229-18231
ORF1ab/nsp14A2-B64Y64XY5989XnonsyntaTtaA960.66666718229-18231
ORF1ab/nsp14A2-B64Y64XY5989XnonsyntaTtaG930.33333318229-18231
ORF1ab/nsp14A2-B64Y64NY5989NnonsynTatAat22118229-18231
ORF1ab/nsp14A2-B64Y64IY5989InonsynTAtATt22118229-18231
ORF1ab/nsp14A2-B64Y64QY5989QnonsynTaTCaG22118229-18231
ORF1ab/nsp14A2-B64Y64del1Y5989del1deltAtt-t11118229-18231
ORF1ab/nsp14A2-B64Y64EY5989EnonsynTaTGaA11118229-18231
ORF1ab/nsp14A2-B64Y64del2Y5989del2deltATt--11118229-18231

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp14A2-B64Y64YtaTtaC23062306All0.000441
ORF1ab/nsp14A2-B64Y64YtaTtaC11141114AY.39.1.10.807246
ORF1ab/nsp14A2-B64Y64YtaTtaC592592B.1.5260.013915
ORF1ab/nsp14A2-B64Y64YtaTtaC139139B.1.1.70.000124
ORF1ab/nsp14A2-B64Y64CtAttGt9699All0.000018
ORF1ab/nsp14A2-B64Y64CtATtGC399All0.000001
ORF1ab/nsp14A2-B64Y64YtaTtaC7878AY.40.000121
ORF1ab/nsp14A2-B64Y64YtaTtaC5555B.1.1.1691
ORF1ab/nsp14A2-B64Y64CtAttGt4949B.1.1.70.000044
ORF1ab/nsp14A2-B64Y64YtaTtaC4444AY.430.000195
ORF1ab/nsp14A2-B64Y64HTatCat2828All0.000005
ORF1ab/nsp14A2-B64Y64YtaTtaC2828AY.250.000168
ORF1ab/nsp14A2-B64Y64YtaTtaC2828B.1.2580.001863
ORF1ab/nsp14A2-B64Y64YtaTtaC2323B.1.1.2220.004692
ORF1ab/nsp14A2-B64Y64delTAT---1919All0.000004
ORF1ab/nsp14A2-B64Y64YtaTtaC1818B.10.000165
ORF1ab/nsp14A2-B64Y64YtaTtaC1414B.1.20.000123
ORF1ab/nsp14A2-B64Y64YtaTtaC1313B.1.617.20.000049
ORF1ab/nsp14A2-B64Y64FtAttTt1212All0.000002
ORF1ab/nsp14A2-B64Y64YtaTtaC1111B.1.10.0002
ORF1ab/nsp14A2-B64Y64YtaTtaC1010P.10.000158
ORF1ab/nsp14A2-B64Y64XtaTtaA69All0.000001
ORF1ab/nsp14A2-B64Y64XtaTtaG39All0.000001
ORF1ab/nsp14A2-B64Y64YtaTtaC88AY.980.000632
ORF1ab/nsp14A2-B64Y64YtaTtaC77AY.39.10.000277
ORF1ab/nsp14A2-B64Y64YtaTtaC77B.1.160.260.016949
ORF1ab/nsp14A2-B64Y64YtaTtaC77B.1.1770.000092
ORF1ab/nsp14A2-B64Y64YtaTtaC77B.1.5960.00061
ORF1ab/nsp14A2-B64Y64YtaTtaC66AY.30.00006
ORF1ab/nsp14A2-B64Y64YtaTtaC66AY.470.000187
ORF1ab/nsp14A2-B64Y64delTAT---66B.1.1.70.000005
ORF1ab/nsp14A2-B64Y64HTatCat66B.1.1.70.000005
ORF1ab/nsp14A2-B64Y64HTatCat55AY.1030.000031
ORF1ab/nsp14A2-B64Y64YtaTtaC55AY.340.000485
ORF1ab/nsp14A2-B64Y64YtaTtaC55AY.440.00003
ORF1ab/nsp14A2-B64Y64YtaTtaC55AY.60.000206
ORF1ab/nsp14A2-B64Y64CtAttGt55Q.20.003067
ORF1ab/nsp14A2-B64Y64FtAttTt440.222222
ORF1ab/nsp14A2-B64Y64YtaTtaC44AY.1020.000106
ORF1ab/nsp14A2-B64Y64CtAttGt44AY.250.000024
ORF1ab/nsp14A2-B64Y64CtAttGt44AY.90.00027
ORF1ab/nsp14A2-B64Y64YtaTtaC44B.1.36.380.006568
ORF1ab/nsp14A2-B64Y64YtaTtaC44B.1.6330.166667
ORF1ab/nsp14A2-B64Y64YtaTtaC33AY.1030.000019
ORF1ab/nsp14A2-B64Y64YtaTtaC33AY.390.000074
ORF1ab/nsp14A2-B64Y64CtAttGt33AY.430.000013
ORF1ab/nsp14A2-B64Y64CtAttGt33AY.440.000018
ORF1ab/nsp14A2-B64Y64CtAttGt33AY.50.000062
ORF1ab/nsp14A2-B64Y64YtaTtaC33B.1.2340.000396
ORF1ab/nsp14A2-B64Y64YtaTtaC33B.1.36.170.001482
ORF1ab/nsp14A2-B64Y64CtAttGt33B.1.617.20.000011
ORF1ab/nsp14A2-B64Y64HTatCat33B.1.617.20.000011
ORF1ab/nsp14A2-B64Y64HTatCat220.111111
ORF1ab/nsp14A2-B64Y64XtaTtaG220.111111
ORF1ab/nsp14A2-B64Y64QTaTCaG220.111111
ORF1ab/nsp14A2-B64Y64CtATtGC220.111111
ORF1ab/nsp14A2-B64Y64ITAtATt220.111111
ORF1ab/nsp14A2-B64Y64NTatAat22All0
ORF1ab/nsp14A2-B64Y64ITAtATt22All0
ORF1ab/nsp14A2-B64Y64QTaTCaG22All0
ORF1ab/nsp14A2-B64Y64YtaTtaC22AY.1200.000074
ORF1ab/nsp14A2-B64Y64delTAT---22AY.250.000012
ORF1ab/nsp14A2-B64Y64YtaTtaC22AY.280.003781
ORF1ab/nsp14A2-B64Y64YtaTtaC22AY.290.000032
ORF1ab/nsp14A2-B64Y64CtAttGt22AY.30.00002
ORF1ab/nsp14A2-B64Y64YtaTtaC22AY.300.000791
ORF1ab/nsp14A2-B64Y64CtAttGt22AY.40.000003
ORF1ab/nsp14A2-B64Y64XtaTtaA22AY.440.000012
ORF1ab/nsp14A2-B64Y64YtaTtaC22AY.540.000191
ORF1ab/nsp14A2-B64Y64YtaTtaC22AY.950.001522
ORF1ab/nsp14A2-B64Y64FtAttTt22B.10.000018
ORF1ab/nsp14A2-B64Y64delTAT---22B.1.10.000036
ORF1ab/nsp14A2-B64Y64CtAttGt12B.1.10.000018
ORF1ab/nsp14A2-B64Y64CtATtGC12B.1.10.000018
ORF1ab/nsp14A2-B64Y64HTatCat22B.1.1770.000026
ORF1ab/nsp14A2-B64Y64CtAttGt22B.1.20.000018
ORF1ab/nsp14A2-B64Y64HTatCat22B.1.4270.000101
ORF1ab/nsp14A2-B64Y64YtaTtaC22B.1.4290.000047
ORF1ab/nsp14A2-B64Y64YtaTtaC22P.1.120.000968
ORF1ab/nsp14A2-B64Y64YtaTtaC11A0.000387
ORF1ab/nsp14A2-B64Y64ETaTGaA11All0
ORF1ab/nsp14A2-B64Y64del2tATt--11All0
ORF1ab/nsp14A2-B64Y64del1tAtt-t11All0
ORF1ab/nsp14A2-B64Y64CtAttGt11AY.1000.000046
ORF1ab/nsp14A2-B64Y64YtaTtaC11AY.1010.00049
ORF1ab/nsp14A2-B64Y64CtAttGt11AY.1030.000006
ORF1ab/nsp14A2-B64Y64YtaTtaC11AY.1070.000466
ORF1ab/nsp14A2-B64Y64YtaTtaC11AY.1100.000113
ORF1ab/nsp14A2-B64Y64YtaTtaC11AY.1160.000287
ORF1ab/nsp14A2-B64Y64CtAttGt11AY.1200.000037
ORF1ab/nsp14A2-B64Y64YtaTtaC11AY.130.000161
ORF1ab/nsp14A2-B64Y64FtAttTt11AY.20.000356
ORF1ab/nsp14A2-B64Y64YtaTtaC11AY.200.000039
ORF1ab/nsp14A2-B64Y64HTatCat11AY.230.00007
ORF1ab/nsp14A2-B64Y64YtaTtaC11AY.230.00007
ORF1ab/nsp14A2-B64Y64HTatCat11AY.23.10.000417
ORF1ab/nsp14A2-B64Y64HTatCat11AY.250.000006
ORF1ab/nsp14A2-B64Y64NTatAat11AY.380.000499
ORF1ab/nsp14A2-B64Y64HTatCat11AY.390.000025
ORF1ab/nsp14A2-B64Y64CtAttGt11AY.39.10.00004
ORF1ab/nsp14A2-B64Y64delTAT---11AY.40.000002
ORF1ab/nsp14A2-B64Y64FtAttTt11AY.40.000002
ORF1ab/nsp14A2-B64Y64YtaTtaC11AY.4.20.000022
ORF1ab/nsp14A2-B64Y64delTAT---11AY.4.50.000107
ORF1ab/nsp14A2-B64Y64XtaTtaA11AY.430.000004
ORF1ab/nsp14A2-B64Y64HTatCat11AY.430.000004
ORF1ab/nsp14A2-B64Y64HTatCat11AY.440.000006
ORF1ab/nsp14A2-B64Y64CtAttGt11AY.450.000122
ORF1ab/nsp14A2-B64Y64CtAttGt11AY.46.60.000072
ORF1ab/nsp14A2-B64Y64YtaTtaC11AY.550.000917
ORF1ab/nsp14A2-B64Y64YtaTtaC11AY.610.000105
ORF1ab/nsp14A2-B64Y64YtaTtaC11AY.680.000274
ORF1ab/nsp14A2-B64Y64FtAttTt11AY.690.000187
ORF1ab/nsp14A2-B64Y64CtAttGt11AY.7.10.000113
ORF1ab/nsp14A2-B64Y64YtaTtaC11AY.710.000475
ORF1ab/nsp14A2-B64Y64CtAttGt11AY.750.000056
ORF1ab/nsp14A2-B64Y64FtAttTt11AY.910.00073
ORF1ab/nsp14A2-B64Y64ETaTGaA11AY.990.001049
ORF1ab/nsp14A2-B64Y64XtaTtaA11AY.990.001049
ORF1ab/nsp14A2-B64Y64YtaTtaC11AY.990.001049
ORF1ab/nsp14A2-B64Y64YtaTtaC11AY.99.20.000092
ORF1ab/nsp14A2-B64Y64NTatAat11B.10.000009
ORF1ab/nsp14A2-B64Y64delTAT---11B.10.000009
ORF1ab/nsp14A2-B64Y64CtAttGt11B.10.000009
ORF1ab/nsp14A2-B64Y64YtaTtaC11B.1.1.1610.003534
ORF1ab/nsp14A2-B64Y64HTatCat11B.1.1.2160.00089
ORF1ab/nsp14A2-B64Y64YtaTtaC11B.1.1.280.000311
ORF1ab/nsp14A2-B64Y64CtAttGt11B.1.1.2840.000107
ORF1ab/nsp14A2-B64Y64YtaTtaC11B.1.1.3180.000302
ORF1ab/nsp14A2-B64Y64YtaTtaC11B.1.1.5190.00004
ORF1ab/nsp14A2-B64Y64YtaTtaC11B.1.1260.001276
ORF1ab/nsp14A2-B64Y64CtAttGt11B.1.1600.000031
ORF1ab/nsp14A2-B64Y64YtaTtaC11B.1.1600.000031
ORF1ab/nsp14A2-B64Y64YtaTtaC11B.1.160.160.000929
ORF1ab/nsp14A2-B64Y64delTAT---11B.1.1770.000013
ORF1ab/nsp14A2-B64Y64FtAttTt11B.1.1770.000013
ORF1ab/nsp14A2-B64Y64YtaTtaC11B.1.177.40.000211
ORF1ab/nsp14A2-B64Y64YtaTtaC11B.1.177.600.000218
ORF1ab/nsp14A2-B64Y64delTAT---11B.1.177.680.015152
ORF1ab/nsp14A2-B64Y64YtaTtaC11B.1.177.730.000566
ORF1ab/nsp14A2-B64Y64XtaTtaA11B.1.177.860.000183
ORF1ab/nsp14A2-B64Y64CtAttGt11B.1.2430.00007
ORF1ab/nsp14A2-B64Y64delTAT---11B.1.2580.000067
ORF1ab/nsp14A2-B64Y64HTatCat11B.1.258.30.001675
ORF1ab/nsp14A2-B64Y64CtAttGt11B.1.258.40.003448
ORF1ab/nsp14A2-B64Y64YtaTtaC11B.1.350.008475
ORF1ab/nsp14A2-B64Y64YtaTtaC11B.1.36.100.004785
ORF1ab/nsp14A2-B64Y64CtAttGt11B.1.36.180.00042
ORF1ab/nsp14A2-B64Y64YtaTtaC11B.1.3690.000285
ORF1ab/nsp14A2-B64Y64YtaTtaC11B.1.4660.023256
ORF1ab/nsp14A2-B64Y64YtaTtaC11B.1.5440.006024
ORF1ab/nsp14A2-B64Y64delTAT---11B.1.5610.000397
ORF1ab/nsp14A2-B64Y64XtaTtaA11B.1.5640.000426
ORF1ab/nsp14A2-B64Y64del1tAtt-t11B.1.5960.000087
ORF1ab/nsp14A2-B64Y64YtaTtaC11B.1.617.10.000129
ORF1ab/nsp14A2-B64Y64delTAT---11B.1.617.20.000004
ORF1ab/nsp14A2-B64Y64del2tATt--11B.1.617.20.000004
ORF1ab/nsp14A2-B64Y64XtaTtaG11B.1.6370.000073
ORF1ab/nsp14A2-B64Y64YtaTtaC11C.140.004329
ORF1ab/nsp14A2-B64Y64YtaTtaC11D.20.000075
ORF1ab/nsp14A2-B64Y64CtAttGt11P.10.000016
ORF1ab/nsp14A2-B64Y64delTAT---11P.10.000016
ORF1ab/nsp14A2-B64Y64FtAttTt11P.1.140.000048
ORF1ab/nsp14A2-B64Y64YtaTtaC11P.1.140.000048
ORF1ab/nsp14A2-B64Y64YtaTtaC11P.1.150.000232
ORF1ab/nsp14A2-B64Y64YtaTtaC11Q.80.000165