CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp14A2-B : CodonNum = 58

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp14A2-B58M58IM5983InonsynatGatT9567260.75941418211-18213
ORF1ab/nsp14A2-B58M58IM5983InonsynatGatA9562290.2395418211-18213
ORF1ab/nsp14A2-B58M58IM5983InonsynatGatC95610.0010460318211-18213
ORF1ab/nsp14A2-B58M58LM5983LnonsynAtgCtg44260.59090918211-18213
ORF1ab/nsp14A2-B58M58LM5983LnonsynAtgTtg44130.29545518211-18213
ORF1ab/nsp14A2-B58M58LM5983LnonsynAtGTtA4430.068181818211-18213
ORF1ab/nsp14A2-B58M58LM5983LnonsynAtGCtT4420.045454518211-18213
ORF1ab/nsp14A2-B58M58VM5983VnonsynAtgGtg24220.91666718211-18213
ORF1ab/nsp14A2-B58M58VM5983VnonsynAtGGtA2420.083333318211-18213
ORF1ab/nsp14A2-B58M58delM5983deldelATG---1818118211-18213
ORF1ab/nsp14A2-B58M58TM5983TnonsynaTgaCg750.71428618211-18213
ORF1ab/nsp14A2-B58M58TM5983TnonsynaTGaCT720.28571418211-18213
ORF1ab/nsp14A2-B58M58XM5983XnonsynATGTAA630.518211-18213
ORF1ab/nsp14A2-B58M58XM5983XnonsynATgTAg630.518211-18213
ORF1ab/nsp14A2-B58M58KM5983KnonsynaTgaAg540.818211-18213
ORF1ab/nsp14A2-B58M58KM5983KnonsynaTGaAA510.218211-18213
ORF1ab/nsp14A2-B58M58EM5983EnonsynATgGAg420.518211-18213
ORF1ab/nsp14A2-B58M58EM5983EnonsynATGGAA420.518211-18213
ORF1ab/nsp14A2-B58M58del1M5983del1delatGat-320.66666718211-18213
ORF1ab/nsp14A2-B58M58del1M5983del1delAtg-tg310.33333318211-18213
ORF1ab/nsp14A2-B58M58RM5983RnonsynaTgaGg22118211-18213
ORF1ab/nsp14A2-B58M58AM5983AnonsynATgGCg11118211-18213
ORF1ab/nsp14A2-B58M58FM5983FnonsynAtGTtT11118211-18213

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp14A2-B58M58IatGatT726956All0.000139
ORF1ab/nsp14A2-B58M58IatGatA229956All0.000044
ORF1ab/nsp14A2-B58M58IatGatC1956All0
ORF1ab/nsp14A2-B58M58IatGatT197253B.1.1.70.000176
ORF1ab/nsp14A2-B58M58IatGatA55253B.1.1.70.000049
ORF1ab/nsp14A2-B58M58IatGatC1253B.1.1.70.000001
ORF1ab/nsp14A2-B58M58IatGatT122127AY.40.00019
ORF1ab/nsp14A2-B58M58IatGatA5127AY.40.000008
ORF1ab/nsp14A2-B58M58IatGatT8184B.10.000742
ORF1ab/nsp14A2-B58M58IatGatA384B.10.000027
ORF1ab/nsp14A2-B58M58IatGatA3152B.1.617.20.000117
ORF1ab/nsp14A2-B58M58IatGatT2152B.1.617.20.000079
ORF1ab/nsp14A2-B58M58IatGatT3049AY.440.000183
ORF1ab/nsp14A2-B58M58IatGatA1949AY.440.000116
ORF1ab/nsp14A2-B58M58IatGatT4646AY.46.60.003322
ORF1ab/nsp14A2-B58M58LAtgCtg2644All0.000005
ORF1ab/nsp14A2-B58M58LAtgTtg1344All0.000002
ORF1ab/nsp14A2-B58M58LAtGTtA344All0.000001
ORF1ab/nsp14A2-B58M58LAtGCtT244All0
ORF1ab/nsp14A2-B58M58IatGatT3737B.1.1681
ORF1ab/nsp14A2-B58M58IatGatT2128AY.1030.00013
ORF1ab/nsp14A2-B58M58IatGatA728AY.1030.000043
ORF1ab/nsp14A2-B58M58VAtgGtg2224All0.000004
ORF1ab/nsp14A2-B58M58VAtGGtA224All0
ORF1ab/nsp14A2-B58M58IatGatA2020B.1.2340.002639
ORF1ab/nsp14A2-B58M58IatGatA1019B.1.20.000088
ORF1ab/nsp14A2-B58M58IatGatT919B.1.20.000079
ORF1ab/nsp14A2-B58M58delATG---1818All0.000003
ORF1ab/nsp14A2-B58M58IatGatT1117AY.430.000049
ORF1ab/nsp14A2-B58M58IatGatA617AY.430.000027
ORF1ab/nsp14A2-B58M58IatGatT1016AY.1020.000265
ORF1ab/nsp14A2-B58M58IatGatA616AY.1020.000159
ORF1ab/nsp14A2-B58M58IatGatT1016AY.250.00006
ORF1ab/nsp14A2-B58M58IatGatA616AY.250.000036
ORF1ab/nsp14A2-B58M58IatGatT712AY.30.00007
ORF1ab/nsp14A2-B58M58IatGatA512AY.30.00005
ORF1ab/nsp14A2-B58M58LAtgCtg1010B.1.5950.00261
ORF1ab/nsp14A2-B58M58IatGatA99AY.1110.001648
ORF1ab/nsp14A2-B58M58LAtgTtg79AY.40.000011
ORF1ab/nsp14A2-B58M58LAtgCtg29AY.40.000003
ORF1ab/nsp14A2-B58M58IatGatT99AY.740.001041
ORF1ab/nsp14A2-B58M58IatGatT88AY.480.003721
ORF1ab/nsp14A2-B58M58TaTgaCg57All0.000001
ORF1ab/nsp14A2-B58M58TaTGaCT27All0
ORF1ab/nsp14A2-B58M58IatGatT77AY.1100.000789
ORF1ab/nsp14A2-B58M58IatGatT77AY.470.000218
ORF1ab/nsp14A2-B58M58delATG---77B.1.1.70.000006
ORF1ab/nsp14A2-B58M58LAtGTtA260.111111
ORF1ab/nsp14A2-B58M58LAtGCtT260.111111
ORF1ab/nsp14A2-B58M58LAtgTtg260.111111
ORF1ab/nsp14A2-B58M58XATGTAA36All0.000001
ORF1ab/nsp14A2-B58M58XATgTAg36All0.000001
ORF1ab/nsp14A2-B58M58IatGatT56AY.390.000124
ORF1ab/nsp14A2-B58M58IatGatA16AY.390.000025
ORF1ab/nsp14A2-B58M58VAtgGtg66AY.40.000009
ORF1ab/nsp14A2-B58M58IatGatT66AY.640.003571
ORF1ab/nsp14A2-B58M58IatGatT56P.10.000079
ORF1ab/nsp14A2-B58M58IatGatA16P.10.000016
ORF1ab/nsp14A2-B58M58IatGatT56Q.80.000825
ORF1ab/nsp14A2-B58M58IatGatA16Q.80.000165
ORF1ab/nsp14A2-B58M58KaTgaAg45All0.000001
ORF1ab/nsp14A2-B58M58KaTGaAA15All0
ORF1ab/nsp14A2-B58M58IatGatT45AY.330.000267
ORF1ab/nsp14A2-B58M58IatGatA15AY.330.000067
ORF1ab/nsp14A2-B58M58LAtgCtg55AY.430.000022
ORF1ab/nsp14A2-B58M58IatGatT55AY.50.000103
ORF1ab/nsp14A2-B58M58LAtgCtg35B.1.1.70.000003
ORF1ab/nsp14A2-B58M58LAtgTtg25B.1.1.70.000002
ORF1ab/nsp14A2-B58M58IatGatA35B.1.1770.00004
ORF1ab/nsp14A2-B58M58IatGatT25B.1.1770.000026
ORF1ab/nsp14A2-B58M58IatGatA55B.1.5970.023148
ORF1ab/nsp14A2-B58M58EATgGAg240.111111
ORF1ab/nsp14A2-B58M58XATgTAg240.111111
ORF1ab/nsp14A2-B58M58VAtGGtA240.111111
ORF1ab/nsp14A2-B58M58EATGGAA240.111111
ORF1ab/nsp14A2-B58M58VAtgGtg240.111111
ORF1ab/nsp14A2-B58M58XATGTAA240.111111
ORF1ab/nsp14A2-B58M58EATgGAg24All0
ORF1ab/nsp14A2-B58M58EATGGAA24All0
ORF1ab/nsp14A2-B58M58IatGatA34AY.4.20.000065
ORF1ab/nsp14A2-B58M58IatGatT14AY.4.20.000022
ORF1ab/nsp14A2-B58M58VAtgGtg44AY.430.000018
ORF1ab/nsp14A2-B58M58IatGatT44B.1.1.3060.001754
ORF1ab/nsp14A2-B58M58IatGatT44B.1.1600.000125
ORF1ab/nsp14A2-B58M58IatGatT34B.1.5260.000071
ORF1ab/nsp14A2-B58M58IatGatA14B.1.5260.000024
ORF1ab/nsp14A2-B58M58IatGatA44Q.10.000505
ORF1ab/nsp14A2-B58M58del1atGat-23All0
ORF1ab/nsp14A2-B58M58del1Atg-tg13All0
ORF1ab/nsp14A2-B58M58IatGatT33AY.240.001293
ORF1ab/nsp14A2-B58M58IatGatA23AY.290.000032
ORF1ab/nsp14A2-B58M58IatGatT13AY.290.000016
ORF1ab/nsp14A2-B58M58IatGatT23B.1.10.000036
ORF1ab/nsp14A2-B58M58IatGatA13B.1.10.000018
ORF1ab/nsp14A2-B58M58IatGatT33B.1.1.5190.000119
ORF1ab/nsp14A2-B58M58VAtgGtg33B.1.2210.000213
ORF1ab/nsp14A2-B58M58IatGatA33B.1.6280.001057
ORF1ab/nsp14A2-B58M58IatGatT220.111111
ORF1ab/nsp14A2-B58M58TaTGaCT220.111111
ORF1ab/nsp14A2-B58M58RaTgaGg22All0
ORF1ab/nsp14A2-B58M58IatGatA12AY.1190.000035
ORF1ab/nsp14A2-B58M58IatGatT12AY.1190.000035
ORF1ab/nsp14A2-B58M58IatGatT22AY.200.000078
ORF1ab/nsp14A2-B58M58delATG---22AY.250.000012
ORF1ab/nsp14A2-B58M58IatGatT12AY.29.10.000221
ORF1ab/nsp14A2-B58M58IatGatA12AY.29.10.000221
ORF1ab/nsp14A2-B58M58LAtgCtg22AY.390.000049
ORF1ab/nsp14A2-B58M58IatGatA12AY.9.20.000037
ORF1ab/nsp14A2-B58M58IatGatT12AY.9.20.000037
ORF1ab/nsp14A2-B58M58TaTgaCg22AY.980.000158
ORF1ab/nsp14A2-B58M58IatGatA22B.1.1.2140.000111
ORF1ab/nsp14A2-B58M58LAtgTtg12B.1.1.4090.002833
ORF1ab/nsp14A2-B58M58XATGTAA12B.1.1.4090.002833
ORF1ab/nsp14A2-B58M58LAtGTtA12B.1.1.4090.002833
ORF1ab/nsp14A2-B58M58XATgTAg12B.1.1.4090.002833
ORF1ab/nsp14A2-B58M58KaTgaAg12B.1.1.4090.002833
ORF1ab/nsp14A2-B58M58KaTGaAA12B.1.1.4090.002833
ORF1ab/nsp14A2-B58M58IatGatA12B.1.3510.00003
ORF1ab/nsp14A2-B58M58IatGatT12B.1.3510.00003
ORF1ab/nsp14A2-B58M58IatGatT22B.1.4560.006536
ORF1ab/nsp14A2-B58M58IatGatA22B.1.5090.001732
ORF1ab/nsp14A2-B58M58IatGatA12P.1.140.000048
ORF1ab/nsp14A2-B58M58IatGatT12P.1.140.000048
ORF1ab/nsp14A2-B58M58AATgGCg11All0
ORF1ab/nsp14A2-B58M58FAtGTtT11All0
ORF1ab/nsp14A2-B58M58IatGatA11AY.100.00053
ORF1ab/nsp14A2-B58M58VAtgGtg11AY.1030.000006
ORF1ab/nsp14A2-B58M58IatGatT11AY.1140.000231
ORF1ab/nsp14A2-B58M58IatGatT11AY.1170.000085
ORF1ab/nsp14A2-B58M58IatGatT11AY.120.20.001285
ORF1ab/nsp14A2-B58M58IatGatT11AY.140.000088
ORF1ab/nsp14A2-B58M58IatGatT11AY.16.10.00047
ORF1ab/nsp14A2-B58M58IatGatT11AY.230.00007
ORF1ab/nsp14A2-B58M58LAtgCtg11AY.250.000006
ORF1ab/nsp14A2-B58M58KaTgaAg11AY.250.000006
ORF1ab/nsp14A2-B58M58VAtgGtg11AY.260.000028
ORF1ab/nsp14A2-B58M58LAtgTtg11AY.30.00001
ORF1ab/nsp14A2-B58M58VAtgGtg11AY.30.00001
ORF1ab/nsp14A2-B58M58IatGatT11AY.350.000233
ORF1ab/nsp14A2-B58M58IatGatA11AY.360.000148
ORF1ab/nsp14A2-B58M58LAtgCtg11AY.360.000148
ORF1ab/nsp14A2-B58M58TaTgaCg11AY.39.10.00004
ORF1ab/nsp14A2-B58M58delATG---11AY.40.000002
ORF1ab/nsp14A2-B58M58IatGatA11AY.4.40.000409
ORF1ab/nsp14A2-B58M58delATG---11AY.4.50.000107
ORF1ab/nsp14A2-B58M58IatGatA11AY.420.00004
ORF1ab/nsp14A2-B58M58IatGatT11AY.460.000104
ORF1ab/nsp14A2-B58M58IatGatA11AY.540.000095
ORF1ab/nsp14A2-B58M58IatGatA11AY.60.000041
ORF1ab/nsp14A2-B58M58IatGatT11AY.600.000938
ORF1ab/nsp14A2-B58M58IatGatT11AY.610.000105
ORF1ab/nsp14A2-B58M58IatGatT11AY.7.10.000113
ORF1ab/nsp14A2-B58M58del1Atg-tg11AY.750.000056
ORF1ab/nsp14A2-B58M58IatGatA11AY.750.000056
ORF1ab/nsp14A2-B58M58IatGatT11AY.900.000684
ORF1ab/nsp14A2-B58M58IatGatT11AY.920.000287
ORF1ab/nsp14A2-B58M58del1atGat-11B0.000128
ORF1ab/nsp14A2-B58M58delATG---11B.10.000009
ORF1ab/nsp14A2-B58M58FAtGTtT11B.1.10.000018
ORF1ab/nsp14A2-B58M58delATG---11B.1.10.000018
ORF1ab/nsp14A2-B58M58IatGatT11B.1.1.2160.00089
ORF1ab/nsp14A2-B58M58RaTgaGg11B.1.1.3000.010753
ORF1ab/nsp14A2-B58M58IatGatA11B.1.1.3160.000925
ORF1ab/nsp14A2-B58M58IatGatT11B.1.1.3760.005952
ORF1ab/nsp14A2-B58M58IatGatA11B.1.1.4090.002833
ORF1ab/nsp14A2-B58M58VAtgGtg11B.1.1.5190.00004
ORF1ab/nsp14A2-B58M58VAtgGtg11B.1.1.70.000001
ORF1ab/nsp14A2-B58M58TaTgaCg11B.1.1.70.000001
ORF1ab/nsp14A2-B58M58IatGatA11B.1.1280.000635
ORF1ab/nsp14A2-B58M58IatGatT11B.1.1460.004237
ORF1ab/nsp14A2-B58M58VAtgGtg11B.1.1600.000031
ORF1ab/nsp14A2-B58M58IatGatT11B.1.1640.014925
ORF1ab/nsp14A2-B58M58KaTgaAg11B.1.1770.000013
ORF1ab/nsp14A2-B58M58delATG---11B.1.1770.000013
ORF1ab/nsp14A2-B58M58delATG---11B.1.177.680.015152
ORF1ab/nsp14A2-B58M58del1atGat-11B.1.2060.000816
ORF1ab/nsp14A2-B58M58IatGatT11B.1.214.10.02
ORF1ab/nsp14A2-B58M58IatGatT11B.1.2430.00007
ORF1ab/nsp14A2-B58M58AATgGCg11B.1.2580.000067
ORF1ab/nsp14A2-B58M58IatGatT11B.1.3110.000275
ORF1ab/nsp14A2-B58M58IatGatT11B.1.360.000146
ORF1ab/nsp14A2-B58M58IatGatT11B.1.3780.006849
ORF1ab/nsp14A2-B58M58IatGatT11B.1.3980.002976
ORF1ab/nsp14A2-B58M58KaTgaAg11B.1.4220.000812
ORF1ab/nsp14A2-B58M58RaTgaGg11B.1.4320.011236
ORF1ab/nsp14A2-B58M58IatGatT11B.1.5250.000113
ORF1ab/nsp14A2-B58M58delATG---11B.1.5610.000397
ORF1ab/nsp14A2-B58M58IatGatA11B.1.5960.000087
ORF1ab/nsp14A2-B58M58IatGatT11B.1.617.10.000129
ORF1ab/nsp14A2-B58M58delATG---11B.1.617.20.000004
ORF1ab/nsp14A2-B58M58LAtgCtg11B.1.617.20.000004
ORF1ab/nsp14A2-B58M58LAtgCtg11B.1.6210.000089
ORF1ab/nsp14A2-B58M58VAtgGtg11B.1.621.10.000506
ORF1ab/nsp14A2-B58M58IatGatA11B.1.6250.002353
ORF1ab/nsp14A2-B58M58IatGatT11B.1.6310.003367
ORF1ab/nsp14A2-B58M58IatGatT11C.36.30.000567
ORF1ab/nsp14A2-B58M58IatGatT11C.370.000116
ORF1ab/nsp14A2-B58M58TaTgaCg11D.20.000075
ORF1ab/nsp14A2-B58M58delATG---11P.10.000016
ORF1ab/nsp14A2-B58M58IatGatT11P.20.000187