CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp14A2-B | 58 | M58I | M5983I | nonsyn | atG | atT | 956 | 726 | 0.759414 | 18211-18213 |
ORF1ab/nsp14A2-B | 58 | M58I | M5983I | nonsyn | atG | atA | 956 | 229 | 0.23954 | 18211-18213 |
ORF1ab/nsp14A2-B | 58 | M58I | M5983I | nonsyn | atG | atC | 956 | 1 | 0.00104603 | 18211-18213 |
ORF1ab/nsp14A2-B | 58 | M58L | M5983L | nonsyn | Atg | Ctg | 44 | 26 | 0.590909 | 18211-18213 |
ORF1ab/nsp14A2-B | 58 | M58L | M5983L | nonsyn | Atg | Ttg | 44 | 13 | 0.295455 | 18211-18213 |
ORF1ab/nsp14A2-B | 58 | M58L | M5983L | nonsyn | AtG | TtA | 44 | 3 | 0.0681818 | 18211-18213 |
ORF1ab/nsp14A2-B | 58 | M58L | M5983L | nonsyn | AtG | CtT | 44 | 2 | 0.0454545 | 18211-18213 |
ORF1ab/nsp14A2-B | 58 | M58V | M5983V | nonsyn | Atg | Gtg | 24 | 22 | 0.916667 | 18211-18213 |
ORF1ab/nsp14A2-B | 58 | M58V | M5983V | nonsyn | AtG | GtA | 24 | 2 | 0.0833333 | 18211-18213 |
ORF1ab/nsp14A2-B | 58 | M58del | M5983del | del | ATG | --- | 18 | 18 | 1 | 18211-18213 |
ORF1ab/nsp14A2-B | 58 | M58T | M5983T | nonsyn | aTg | aCg | 7 | 5 | 0.714286 | 18211-18213 |
ORF1ab/nsp14A2-B | 58 | M58T | M5983T | nonsyn | aTG | aCT | 7 | 2 | 0.285714 | 18211-18213 |
ORF1ab/nsp14A2-B | 58 | M58X | M5983X | nonsyn | ATG | TAA | 6 | 3 | 0.5 | 18211-18213 |
ORF1ab/nsp14A2-B | 58 | M58X | M5983X | nonsyn | ATg | TAg | 6 | 3 | 0.5 | 18211-18213 |
ORF1ab/nsp14A2-B | 58 | M58K | M5983K | nonsyn | aTg | aAg | 5 | 4 | 0.8 | 18211-18213 |
ORF1ab/nsp14A2-B | 58 | M58K | M5983K | nonsyn | aTG | aAA | 5 | 1 | 0.2 | 18211-18213 |
ORF1ab/nsp14A2-B | 58 | M58E | M5983E | nonsyn | ATg | GAg | 4 | 2 | 0.5 | 18211-18213 |
ORF1ab/nsp14A2-B | 58 | M58E | M5983E | nonsyn | ATG | GAA | 4 | 2 | 0.5 | 18211-18213 |
ORF1ab/nsp14A2-B | 58 | M58del1 | M5983del1 | del | atG | at- | 3 | 2 | 0.666667 | 18211-18213 |
ORF1ab/nsp14A2-B | 58 | M58del1 | M5983del1 | del | Atg | -tg | 3 | 1 | 0.333333 | 18211-18213 |
ORF1ab/nsp14A2-B | 58 | M58R | M5983R | nonsyn | aTg | aGg | 2 | 2 | 1 | 18211-18213 |
ORF1ab/nsp14A2-B | 58 | M58A | M5983A | nonsyn | ATg | GCg | 1 | 1 | 1 | 18211-18213 |
ORF1ab/nsp14A2-B | 58 | M58F | M5983F | nonsyn | AtG | TtT | 1 | 1 | 1 | 18211-18213 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp14A2-B | 58 | M58I | atG | atT | 726 | 956 | All | 0.000139 |
ORF1ab/nsp14A2-B | 58 | M58I | atG | atA | 229 | 956 | All | 0.000044 |
ORF1ab/nsp14A2-B | 58 | M58I | atG | atC | 1 | 956 | All | 0 |
ORF1ab/nsp14A2-B | 58 | M58I | atG | atT | 197 | 253 | B.1.1.7 | 0.000176 |
ORF1ab/nsp14A2-B | 58 | M58I | atG | atA | 55 | 253 | B.1.1.7 | 0.000049 |
ORF1ab/nsp14A2-B | 58 | M58I | atG | atC | 1 | 253 | B.1.1.7 | 0.000001 |
ORF1ab/nsp14A2-B | 58 | M58I | atG | atT | 122 | 127 | AY.4 | 0.00019 |
ORF1ab/nsp14A2-B | 58 | M58I | atG | atA | 5 | 127 | AY.4 | 0.000008 |
ORF1ab/nsp14A2-B | 58 | M58I | atG | atT | 81 | 84 | B.1 | 0.000742 |
ORF1ab/nsp14A2-B | 58 | M58I | atG | atA | 3 | 84 | B.1 | 0.000027 |
ORF1ab/nsp14A2-B | 58 | M58I | atG | atA | 31 | 52 | B.1.617.2 | 0.000117 |
ORF1ab/nsp14A2-B | 58 | M58I | atG | atT | 21 | 52 | B.1.617.2 | 0.000079 |
ORF1ab/nsp14A2-B | 58 | M58I | atG | atT | 30 | 49 | AY.44 | 0.000183 |
ORF1ab/nsp14A2-B | 58 | M58I | atG | atA | 19 | 49 | AY.44 | 0.000116 |
ORF1ab/nsp14A2-B | 58 | M58I | atG | atT | 46 | 46 | AY.46.6 | 0.003322 |
ORF1ab/nsp14A2-B | 58 | M58L | Atg | Ctg | 26 | 44 | All | 0.000005 |
ORF1ab/nsp14A2-B | 58 | M58L | Atg | Ttg | 13 | 44 | All | 0.000002 |
ORF1ab/nsp14A2-B | 58 | M58L | AtG | TtA | 3 | 44 | All | 0.000001 |
ORF1ab/nsp14A2-B | 58 | M58L | AtG | CtT | 2 | 44 | All | 0 |
ORF1ab/nsp14A2-B | 58 | M58I | atG | atT | 37 | 37 | B.1.168 | 1 |
ORF1ab/nsp14A2-B | 58 | M58I | atG | atT | 21 | 28 | AY.103 | 0.00013 |
ORF1ab/nsp14A2-B | 58 | M58I | atG | atA | 7 | 28 | AY.103 | 0.000043 |
ORF1ab/nsp14A2-B | 58 | M58V | Atg | Gtg | 22 | 24 | All | 0.000004 |
ORF1ab/nsp14A2-B | 58 | M58V | AtG | GtA | 2 | 24 | All | 0 |
ORF1ab/nsp14A2-B | 58 | M58I | atG | atA | 20 | 20 | B.1.234 | 0.002639 |
ORF1ab/nsp14A2-B | 58 | M58I | atG | atA | 10 | 19 | B.1.2 | 0.000088 |
ORF1ab/nsp14A2-B | 58 | M58I | atG | atT | 9 | 19 | B.1.2 | 0.000079 |
ORF1ab/nsp14A2-B | 58 | M58del | ATG | --- | 18 | 18 | All | 0.000003 |
ORF1ab/nsp14A2-B | 58 | M58I | atG | atT | 11 | 17 | AY.43 | 0.000049 |
ORF1ab/nsp14A2-B | 58 | M58I | atG | atA | 6 | 17 | AY.43 | 0.000027 |
ORF1ab/nsp14A2-B | 58 | M58I | atG | atT | 10 | 16 | AY.102 | 0.000265 |
ORF1ab/nsp14A2-B | 58 | M58I | atG | atA | 6 | 16 | AY.102 | 0.000159 |
ORF1ab/nsp14A2-B | 58 | M58I | atG | atT | 10 | 16 | AY.25 | 0.00006 |
ORF1ab/nsp14A2-B | 58 | M58I | atG | atA | 6 | 16 | AY.25 | 0.000036 |
ORF1ab/nsp14A2-B | 58 | M58I | atG | atT | 7 | 12 | AY.3 | 0.00007 |
ORF1ab/nsp14A2-B | 58 | M58I | atG | atA | 5 | 12 | AY.3 | 0.00005 |
ORF1ab/nsp14A2-B | 58 | M58L | Atg | Ctg | 10 | 10 | B.1.595 | 0.00261 |
ORF1ab/nsp14A2-B | 58 | M58I | atG | atA | 9 | 9 | AY.111 | 0.001648 |
ORF1ab/nsp14A2-B | 58 | M58L | Atg | Ttg | 7 | 9 | AY.4 | 0.000011 |
ORF1ab/nsp14A2-B | 58 | M58L | Atg | Ctg | 2 | 9 | AY.4 | 0.000003 |
ORF1ab/nsp14A2-B | 58 | M58I | atG | atT | 9 | 9 | AY.74 | 0.001041 |
ORF1ab/nsp14A2-B | 58 | M58I | atG | atT | 8 | 8 | AY.48 | 0.003721 |
ORF1ab/nsp14A2-B | 58 | M58T | aTg | aCg | 5 | 7 | All | 0.000001 |
ORF1ab/nsp14A2-B | 58 | M58T | aTG | aCT | 2 | 7 | All | 0 |
ORF1ab/nsp14A2-B | 58 | M58I | atG | atT | 7 | 7 | AY.110 | 0.000789 |
ORF1ab/nsp14A2-B | 58 | M58I | atG | atT | 7 | 7 | AY.47 | 0.000218 |
ORF1ab/nsp14A2-B | 58 | M58del | ATG | --- | 7 | 7 | B.1.1.7 | 0.000006 |
ORF1ab/nsp14A2-B | 58 | M58L | AtG | TtA | 2 | 6 | 0.111111 | |
ORF1ab/nsp14A2-B | 58 | M58L | AtG | CtT | 2 | 6 | 0.111111 | |
ORF1ab/nsp14A2-B | 58 | M58L | Atg | Ttg | 2 | 6 | 0.111111 | |
ORF1ab/nsp14A2-B | 58 | M58X | ATG | TAA | 3 | 6 | All | 0.000001 |
ORF1ab/nsp14A2-B | 58 | M58X | ATg | TAg | 3 | 6 | All | 0.000001 |
ORF1ab/nsp14A2-B | 58 | M58I | atG | atT | 5 | 6 | AY.39 | 0.000124 |
ORF1ab/nsp14A2-B | 58 | M58I | atG | atA | 1 | 6 | AY.39 | 0.000025 |
ORF1ab/nsp14A2-B | 58 | M58V | Atg | Gtg | 6 | 6 | AY.4 | 0.000009 |
ORF1ab/nsp14A2-B | 58 | M58I | atG | atT | 6 | 6 | AY.64 | 0.003571 |
ORF1ab/nsp14A2-B | 58 | M58I | atG | atT | 5 | 6 | P.1 | 0.000079 |
ORF1ab/nsp14A2-B | 58 | M58I | atG | atA | 1 | 6 | P.1 | 0.000016 |
ORF1ab/nsp14A2-B | 58 | M58I | atG | atT | 5 | 6 | Q.8 | 0.000825 |
ORF1ab/nsp14A2-B | 58 | M58I | atG | atA | 1 | 6 | Q.8 | 0.000165 |
ORF1ab/nsp14A2-B | 58 | M58K | aTg | aAg | 4 | 5 | All | 0.000001 |
ORF1ab/nsp14A2-B | 58 | M58K | aTG | aAA | 1 | 5 | All | 0 |
ORF1ab/nsp14A2-B | 58 | M58I | atG | atT | 4 | 5 | AY.33 | 0.000267 |
ORF1ab/nsp14A2-B | 58 | M58I | atG | atA | 1 | 5 | AY.33 | 0.000067 |
ORF1ab/nsp14A2-B | 58 | M58L | Atg | Ctg | 5 | 5 | AY.43 | 0.000022 |
ORF1ab/nsp14A2-B | 58 | M58I | atG | atT | 5 | 5 | AY.5 | 0.000103 |
ORF1ab/nsp14A2-B | 58 | M58L | Atg | Ctg | 3 | 5 | B.1.1.7 | 0.000003 |
ORF1ab/nsp14A2-B | 58 | M58L | Atg | Ttg | 2 | 5 | B.1.1.7 | 0.000002 |
ORF1ab/nsp14A2-B | 58 | M58I | atG | atA | 3 | 5 | B.1.177 | 0.00004 |
ORF1ab/nsp14A2-B | 58 | M58I | atG | atT | 2 | 5 | B.1.177 | 0.000026 |
ORF1ab/nsp14A2-B | 58 | M58I | atG | atA | 5 | 5 | B.1.597 | 0.023148 |
ORF1ab/nsp14A2-B | 58 | M58E | ATg | GAg | 2 | 4 | 0.111111 | |
ORF1ab/nsp14A2-B | 58 | M58X | ATg | TAg | 2 | 4 | 0.111111 | |
ORF1ab/nsp14A2-B | 58 | M58V | AtG | GtA | 2 | 4 | 0.111111 | |
ORF1ab/nsp14A2-B | 58 | M58E | ATG | GAA | 2 | 4 | 0.111111 | |
ORF1ab/nsp14A2-B | 58 | M58V | Atg | Gtg | 2 | 4 | 0.111111 | |
ORF1ab/nsp14A2-B | 58 | M58X | ATG | TAA | 2 | 4 | 0.111111 | |
ORF1ab/nsp14A2-B | 58 | M58E | ATg | GAg | 2 | 4 | All | 0 |
ORF1ab/nsp14A2-B | 58 | M58E | ATG | GAA | 2 | 4 | All | 0 |
ORF1ab/nsp14A2-B | 58 | M58I | atG | atA | 3 | 4 | AY.4.2 | 0.000065 |
ORF1ab/nsp14A2-B | 58 | M58I | atG | atT | 1 | 4 | AY.4.2 | 0.000022 |
ORF1ab/nsp14A2-B | 58 | M58V | Atg | Gtg | 4 | 4 | AY.43 | 0.000018 |
ORF1ab/nsp14A2-B | 58 | M58I | atG | atT | 4 | 4 | B.1.1.306 | 0.001754 |
ORF1ab/nsp14A2-B | 58 | M58I | atG | atT | 4 | 4 | B.1.160 | 0.000125 |
ORF1ab/nsp14A2-B | 58 | M58I | atG | atT | 3 | 4 | B.1.526 | 0.000071 |
ORF1ab/nsp14A2-B | 58 | M58I | atG | atA | 1 | 4 | B.1.526 | 0.000024 |
ORF1ab/nsp14A2-B | 58 | M58I | atG | atA | 4 | 4 | Q.1 | 0.000505 |
ORF1ab/nsp14A2-B | 58 | M58del1 | atG | at- | 2 | 3 | All | 0 |
ORF1ab/nsp14A2-B | 58 | M58del1 | Atg | -tg | 1 | 3 | All | 0 |
ORF1ab/nsp14A2-B | 58 | M58I | atG | atT | 3 | 3 | AY.24 | 0.001293 |
ORF1ab/nsp14A2-B | 58 | M58I | atG | atA | 2 | 3 | AY.29 | 0.000032 |
ORF1ab/nsp14A2-B | 58 | M58I | atG | atT | 1 | 3 | AY.29 | 0.000016 |
ORF1ab/nsp14A2-B | 58 | M58I | atG | atT | 2 | 3 | B.1.1 | 0.000036 |
ORF1ab/nsp14A2-B | 58 | M58I | atG | atA | 1 | 3 | B.1.1 | 0.000018 |
ORF1ab/nsp14A2-B | 58 | M58I | atG | atT | 3 | 3 | B.1.1.519 | 0.000119 |
ORF1ab/nsp14A2-B | 58 | M58V | Atg | Gtg | 3 | 3 | B.1.221 | 0.000213 |
ORF1ab/nsp14A2-B | 58 | M58I | atG | atA | 3 | 3 | B.1.628 | 0.001057 |
ORF1ab/nsp14A2-B | 58 | M58I | atG | atT | 2 | 2 | 0.111111 | |
ORF1ab/nsp14A2-B | 58 | M58T | aTG | aCT | 2 | 2 | 0.111111 | |
ORF1ab/nsp14A2-B | 58 | M58R | aTg | aGg | 2 | 2 | All | 0 |
ORF1ab/nsp14A2-B | 58 | M58I | atG | atA | 1 | 2 | AY.119 | 0.000035 |
ORF1ab/nsp14A2-B | 58 | M58I | atG | atT | 1 | 2 | AY.119 | 0.000035 |
ORF1ab/nsp14A2-B | 58 | M58I | atG | atT | 2 | 2 | AY.20 | 0.000078 |
ORF1ab/nsp14A2-B | 58 | M58del | ATG | --- | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp14A2-B | 58 | M58I | atG | atT | 1 | 2 | AY.29.1 | 0.000221 |
ORF1ab/nsp14A2-B | 58 | M58I | atG | atA | 1 | 2 | AY.29.1 | 0.000221 |
ORF1ab/nsp14A2-B | 58 | M58L | Atg | Ctg | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp14A2-B | 58 | M58I | atG | atA | 1 | 2 | AY.9.2 | 0.000037 |
ORF1ab/nsp14A2-B | 58 | M58I | atG | atT | 1 | 2 | AY.9.2 | 0.000037 |
ORF1ab/nsp14A2-B | 58 | M58T | aTg | aCg | 2 | 2 | AY.98 | 0.000158 |
ORF1ab/nsp14A2-B | 58 | M58I | atG | atA | 2 | 2 | B.1.1.214 | 0.000111 |
ORF1ab/nsp14A2-B | 58 | M58L | Atg | Ttg | 1 | 2 | B.1.1.409 | 0.002833 |
ORF1ab/nsp14A2-B | 58 | M58X | ATG | TAA | 1 | 2 | B.1.1.409 | 0.002833 |
ORF1ab/nsp14A2-B | 58 | M58L | AtG | TtA | 1 | 2 | B.1.1.409 | 0.002833 |
ORF1ab/nsp14A2-B | 58 | M58X | ATg | TAg | 1 | 2 | B.1.1.409 | 0.002833 |
ORF1ab/nsp14A2-B | 58 | M58K | aTg | aAg | 1 | 2 | B.1.1.409 | 0.002833 |
ORF1ab/nsp14A2-B | 58 | M58K | aTG | aAA | 1 | 2 | B.1.1.409 | 0.002833 |
ORF1ab/nsp14A2-B | 58 | M58I | atG | atA | 1 | 2 | B.1.351 | 0.00003 |
ORF1ab/nsp14A2-B | 58 | M58I | atG | atT | 1 | 2 | B.1.351 | 0.00003 |
ORF1ab/nsp14A2-B | 58 | M58I | atG | atT | 2 | 2 | B.1.456 | 0.006536 |
ORF1ab/nsp14A2-B | 58 | M58I | atG | atA | 2 | 2 | B.1.509 | 0.001732 |
ORF1ab/nsp14A2-B | 58 | M58I | atG | atA | 1 | 2 | P.1.14 | 0.000048 |
ORF1ab/nsp14A2-B | 58 | M58I | atG | atT | 1 | 2 | P.1.14 | 0.000048 |
ORF1ab/nsp14A2-B | 58 | M58A | ATg | GCg | 1 | 1 | All | 0 |
ORF1ab/nsp14A2-B | 58 | M58F | AtG | TtT | 1 | 1 | All | 0 |
ORF1ab/nsp14A2-B | 58 | M58I | atG | atA | 1 | 1 | AY.10 | 0.00053 |
ORF1ab/nsp14A2-B | 58 | M58V | Atg | Gtg | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp14A2-B | 58 | M58I | atG | atT | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp14A2-B | 58 | M58I | atG | atT | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp14A2-B | 58 | M58I | atG | atT | 1 | 1 | AY.120.2 | 0.001285 |
ORF1ab/nsp14A2-B | 58 | M58I | atG | atT | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp14A2-B | 58 | M58I | atG | atT | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp14A2-B | 58 | M58I | atG | atT | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp14A2-B | 58 | M58L | Atg | Ctg | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp14A2-B | 58 | M58K | aTg | aAg | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp14A2-B | 58 | M58V | Atg | Gtg | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp14A2-B | 58 | M58L | Atg | Ttg | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp14A2-B | 58 | M58V | Atg | Gtg | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp14A2-B | 58 | M58I | atG | atT | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp14A2-B | 58 | M58I | atG | atA | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp14A2-B | 58 | M58L | Atg | Ctg | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp14A2-B | 58 | M58T | aTg | aCg | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp14A2-B | 58 | M58del | ATG | --- | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp14A2-B | 58 | M58I | atG | atA | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp14A2-B | 58 | M58del | ATG | --- | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp14A2-B | 58 | M58I | atG | atA | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp14A2-B | 58 | M58I | atG | atT | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp14A2-B | 58 | M58I | atG | atA | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp14A2-B | 58 | M58I | atG | atA | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp14A2-B | 58 | M58I | atG | atT | 1 | 1 | AY.60 | 0.000938 |
ORF1ab/nsp14A2-B | 58 | M58I | atG | atT | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp14A2-B | 58 | M58I | atG | atT | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp14A2-B | 58 | M58del1 | Atg | -tg | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp14A2-B | 58 | M58I | atG | atA | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp14A2-B | 58 | M58I | atG | atT | 1 | 1 | AY.90 | 0.000684 |
ORF1ab/nsp14A2-B | 58 | M58I | atG | atT | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp14A2-B | 58 | M58del1 | atG | at- | 1 | 1 | B | 0.000128 |
ORF1ab/nsp14A2-B | 58 | M58del | ATG | --- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp14A2-B | 58 | M58F | AtG | TtT | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp14A2-B | 58 | M58del | ATG | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp14A2-B | 58 | M58I | atG | atT | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp14A2-B | 58 | M58R | aTg | aGg | 1 | 1 | B.1.1.300 | 0.010753 |
ORF1ab/nsp14A2-B | 58 | M58I | atG | atA | 1 | 1 | B.1.1.316 | 0.000925 |
ORF1ab/nsp14A2-B | 58 | M58I | atG | atT | 1 | 1 | B.1.1.376 | 0.005952 |
ORF1ab/nsp14A2-B | 58 | M58I | atG | atA | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp14A2-B | 58 | M58V | Atg | Gtg | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp14A2-B | 58 | M58V | Atg | Gtg | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp14A2-B | 58 | M58T | aTg | aCg | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp14A2-B | 58 | M58I | atG | atA | 1 | 1 | B.1.128 | 0.000635 |
ORF1ab/nsp14A2-B | 58 | M58I | atG | atT | 1 | 1 | B.1.146 | 0.004237 |
ORF1ab/nsp14A2-B | 58 | M58V | Atg | Gtg | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp14A2-B | 58 | M58I | atG | atT | 1 | 1 | B.1.164 | 0.014925 |
ORF1ab/nsp14A2-B | 58 | M58K | aTg | aAg | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp14A2-B | 58 | M58del | ATG | --- | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp14A2-B | 58 | M58del | ATG | --- | 1 | 1 | B.1.177.68 | 0.015152 |
ORF1ab/nsp14A2-B | 58 | M58del1 | atG | at- | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp14A2-B | 58 | M58I | atG | atT | 1 | 1 | B.1.214.1 | 0.02 |
ORF1ab/nsp14A2-B | 58 | M58I | atG | atT | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp14A2-B | 58 | M58A | ATg | GCg | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp14A2-B | 58 | M58I | atG | atT | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp14A2-B | 58 | M58I | atG | atT | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp14A2-B | 58 | M58I | atG | atT | 1 | 1 | B.1.378 | 0.006849 |
ORF1ab/nsp14A2-B | 58 | M58I | atG | atT | 1 | 1 | B.1.398 | 0.002976 |
ORF1ab/nsp14A2-B | 58 | M58K | aTg | aAg | 1 | 1 | B.1.422 | 0.000812 |
ORF1ab/nsp14A2-B | 58 | M58R | aTg | aGg | 1 | 1 | B.1.432 | 0.011236 |
ORF1ab/nsp14A2-B | 58 | M58I | atG | atT | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp14A2-B | 58 | M58del | ATG | --- | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp14A2-B | 58 | M58I | atG | atA | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp14A2-B | 58 | M58I | atG | atT | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp14A2-B | 58 | M58del | ATG | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp14A2-B | 58 | M58L | Atg | Ctg | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp14A2-B | 58 | M58L | Atg | Ctg | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp14A2-B | 58 | M58V | Atg | Gtg | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp14A2-B | 58 | M58I | atG | atA | 1 | 1 | B.1.625 | 0.002353 |
ORF1ab/nsp14A2-B | 58 | M58I | atG | atT | 1 | 1 | B.1.631 | 0.003367 |
ORF1ab/nsp14A2-B | 58 | M58I | atG | atT | 1 | 1 | C.36.3 | 0.000567 |
ORF1ab/nsp14A2-B | 58 | M58I | atG | atT | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp14A2-B | 58 | M58T | aTg | aCg | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp14A2-B | 58 | M58del | ATG | --- | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp14A2-B | 58 | M58I | atG | atT | 1 | 1 | P.2 | 0.000187 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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