CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp14A2-B : CodonNum = 508

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF1ab/nsp14A2-B	508	L508L	L6433L	syn	ttG	ttA	5948	5829	0.979993	19561-19563
ORF1ab/nsp14A2-B	508	L508L	L6433L	syn	Ttg	Ctg	5948	114	0.0191661	19561-19563
ORF1ab/nsp14A2-B	508	L508L	L6433L	syn	TtG	CtT	5948	4	0.000672495	19561-19563
ORF1ab/nsp14A2-B	508	L508L	L6433L	syn	TtG	CtA	5948	1	0.000168124	19561-19563
ORF1ab/nsp14A2-B	508	L508F	L6433F	nonsyn	ttG	ttT	2943	2934	0.996942	19561-19563
ORF1ab/nsp14A2-B	508	L508F	L6433F	nonsyn	ttG	ttC	2943	9	0.0030581	19561-19563
ORF1ab/nsp14A2-B	508	L508del	L6433del	del	TTG	---	38	38	1	19561-19563
ORF1ab/nsp14A2-B	508	L508S	L6433S	nonsyn	tTg	tCg	13	13	1	19561-19563
ORF1ab/nsp14A2-B	508	L508V	L6433V	nonsyn	Ttg	Gtg	12	11	0.916667	19561-19563
ORF1ab/nsp14A2-B	508	L508V	L6433V	nonsyn	TtG	GtA	12	1	0.0833333	19561-19563
ORF1ab/nsp14A2-B	508	L508M	L6433M	nonsyn	Ttg	Atg	6	6	1	19561-19563
ORF1ab/nsp14A2-B	508	L508W	L6433W	nonsyn	tTg	tGg	5	5	1	19561-19563
ORF1ab/nsp14A2-B	508	L508X	L6433X	nonsyn	tTg	tAg	3	3	1	19561-19563
ORF1ab/nsp14A2-B	508	L508del2	L6433del2	del	tTG	t--	3	2	0.666667	19561-19563
ORF1ab/nsp14A2-B	508	L508del2	L6433del2	del	TTg	--g	3	1	0.333333	19561-19563
ORF1ab/nsp14A2-B	508	L508I	L6433I	nonsyn	TtG	AtA	2	1	0.5	19561-19563
ORF1ab/nsp14A2-B	508	L508I	L6433I	nonsyn	TtG	AtT	2	1	0.5	19561-19563
ORF1ab/nsp14A2-B	508	L508Q	L6433Q	nonsyn	TTg	CAg	1	1	1	19561-19563
ORF1ab/nsp14A2-B	508	L508T	L6433T	nonsyn	TTG	ACA	1	1	1	19561-19563

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF1ab/nsp14A2-B	508	L508L	ttG	ttA	5829	5948	All	0.001115
ORF1ab/nsp14A2-B	508	L508L	Ttg	Ctg	114	5948	All	0.000022
ORF1ab/nsp14A2-B	508	L508L	TtG	CtT	4	5948	All	0.000001
ORF1ab/nsp14A2-B	508	L508L	TtG	CtA	1	5948	All	0
ORF1ab/nsp14A2-B	508	L508L	ttG	ttA	5456	5456	AY.34	0.529041
ORF1ab/nsp14A2-B	508	L508F	ttG	ttT	2934	2943	All	0.000561
ORF1ab/nsp14A2-B	508	L508F	ttG	ttC	9	2943	All	0.000002
ORF1ab/nsp14A2-B	508	L508F	ttG	ttT	1367	1367	AY.39.1.1	0.99058
ORF1ab/nsp14A2-B	508	L508F	ttG	ttT	1343	1343	AY.39.1	0.053201
ORF1ab/nsp14A2-B	508	L508L	ttG	ttA	114	114	AY.34.1	0.058134
ORF1ab/nsp14A2-B	508	L508L	Ttg	Ctg	74	88	B.1.1.7	0.000066
ORF1ab/nsp14A2-B	508	L508L	ttG	ttA	14	88	B.1.1.7	0.000013
ORF1ab/nsp14A2-B	508	L508F	ttG	ttT	74	76	B.1.1.7	0.000066
ORF1ab/nsp14A2-B	508	L508F	ttG	ttC	2	76	B.1.1.7	0.000002
ORF1ab/nsp14A2-B	508	L508L	ttG	ttA	72	73	B.1.617.2	0.000271
ORF1ab/nsp14A2-B	508	L508L	Ttg	Ctg	1	73	B.1.617.2	0.000004
ORF1ab/nsp14A2-B	508	L508del	TTG	---	38	38	All	0.000007
ORF1ab/nsp14A2-B	508	L508L	ttG	ttA	24	24	B.1.177	0.000316
ORF1ab/nsp14A2-B	508	L508L	ttG	ttA	21	22	AY.36	0.003112
ORF1ab/nsp14A2-B	508	L508L	Ttg	Ctg	1	22	AY.36	0.000148
ORF1ab/nsp14A2-B	508	L508F	ttG	ttT	18	18	AY.103	0.000112
ORF1ab/nsp14A2-B	508	L508F	ttG	ttT	17	18	AY.4	0.000026
ORF1ab/nsp14A2-B	508	L508F	ttG	ttC	1	18	AY.4	0.000002
ORF1ab/nsp14A2-B	508	L508S	tTg	tCg	13	13	All	0.000002
ORF1ab/nsp14A2-B	508	L508V	Ttg	Gtg	11	12	All	0.000002
ORF1ab/nsp14A2-B	508	L508V	TtG	GtA	1	12	All	0
ORF1ab/nsp14A2-B	508	L508F	ttG	ttT	10	10	B.1.160	0.000312
ORF1ab/nsp14A2-B	508	L508F	ttG	ttT	10	10	B.1.617.2	0.000038
ORF1ab/nsp14A2-B	508	L508L	ttG	ttA	7	9	AY.4	0.000011
ORF1ab/nsp14A2-B	508	L508L	Ttg	Ctg	2	9	AY.4	0.000003
ORF1ab/nsp14A2-B	508	L508L	Ttg	Ctg	5	9	AY.43	0.000022
ORF1ab/nsp14A2-B	508	L508L	ttG	ttA	4	9	AY.43	0.000018
ORF1ab/nsp14A2-B	508	L508L	ttG	ttA	6	9	B.1.1	0.000109
ORF1ab/nsp14A2-B	508	L508L	Ttg	Ctg	1	9	B.1.1	0.000018
ORF1ab/nsp14A2-B	508	L508L	TtG	CtA	1	9	B.1.1	0.000018
ORF1ab/nsp14A2-B	508	L508L	TtG	CtT	1	9	B.1.1	0.000018
ORF1ab/nsp14A2-B	508	L508F	ttG	ttT	8	8	B.1	0.000073
ORF1ab/nsp14A2-B	508	L508del	TTG	---	8	8	B.1.1.7	0.000007
ORF1ab/nsp14A2-B	508	L508L	ttG	ttA	7	8	B.1.2	0.000062
ORF1ab/nsp14A2-B	508	L508L	Ttg	Ctg	1	8	B.1.2	0.000009
ORF1ab/nsp14A2-B	508	L508F	ttG	ttT	8	8	B.1.517	0.003416
ORF1ab/nsp14A2-B	508	L508F	ttG	ttT	6	7	AY.39	0.000148
ORF1ab/nsp14A2-B	508	L508F	ttG	ttC	1	7	AY.39	0.000025
ORF1ab/nsp14A2-B	508	L508L	ttG	ttA	7	7	B.1.596	0.00061
ORF1ab/nsp14A2-B	508	L508L	TtG	CtT	3	6		0.166667
ORF1ab/nsp14A2-B	508	L508L	Ttg	Ctg	3	6		0.166667
ORF1ab/nsp14A2-B	508	L508M	Ttg	Atg	6	6	All	0.000001
ORF1ab/nsp14A2-B	508	L508L	ttG	ttA	6	6	AY.35	0.001398
ORF1ab/nsp14A2-B	508	L508L	ttG	ttA	6	6	B.1.241	0.00487
ORF1ab/nsp14A2-B	508	L508W	tTg	tGg	5	5	All	0.000001
ORF1ab/nsp14A2-B	508	L508L	Ttg	Ctg	5	5	AY.114	0.001156
ORF1ab/nsp14A2-B	508	L508L	ttG	ttA	5	5	AY.117	0.000423
ORF1ab/nsp14A2-B	508	L508L	ttG	ttA	5	5	AY.39	0.000124
ORF1ab/nsp14A2-B	508	L508F	ttG	ttT	5	5	AY.43	0.000022
ORF1ab/nsp14A2-B	508	L508F	ttG	ttT	5	5	B.1.1.297	0.011186
ORF1ab/nsp14A2-B	508	L508del	TTG	---	4	4		0.222222
ORF1ab/nsp14A2-B	508	L508L	ttG	ttA	4	4	A.2.3	0.018957
ORF1ab/nsp14A2-B	508	L508L	ttG	ttA	4	4	AY.103	0.000025
ORF1ab/nsp14A2-B	508	L508L	ttG	ttA	4	4	AY.25	0.000024
ORF1ab/nsp14A2-B	508	L508F	ttG	ttT	2	4	AY.26	0.000057
ORF1ab/nsp14A2-B	508	L508F	ttG	ttC	2	4	AY.26	0.000057
ORF1ab/nsp14A2-B	508	L508F	ttG	ttT	4	4	AY.3	0.00004
ORF1ab/nsp14A2-B	508	L508F	ttG	ttT	4	4	AY.42	0.000161
ORF1ab/nsp14A2-B	508	L508L	ttG	ttA	4	4	AY.42	0.000161
ORF1ab/nsp14A2-B	508	L508F	ttG	ttT	4	4	AY.9.1	0.000335
ORF1ab/nsp14A2-B	508	L508L	Ttg	Ctg	4	4	B.1.1.28	0.001245
ORF1ab/nsp14A2-B	508	L508S	tTg	tCg	4	4	B.1.1.7	0.000004
ORF1ab/nsp14A2-B	508	L508L	ttG	ttA	3	4	B.1.429	0.000071
ORF1ab/nsp14A2-B	508	L508L	Ttg	Ctg	1	4	B.1.429	0.000024
ORF1ab/nsp14A2-B	508	L508F	ttG	ttT	3	3		0.166667
ORF1ab/nsp14A2-B	508	L508F	ttG	ttT	3	3	A.2	0.001985
ORF1ab/nsp14A2-B	508	L508X	tTg	tAg	3	3	All	0.000001
ORF1ab/nsp14A2-B	508	L508del2	tTG	t--	2	3	All	0
ORF1ab/nsp14A2-B	508	L508del2	TTg	--g	1	3	All	0
ORF1ab/nsp14A2-B	508	L508L	ttG	ttA	3	3	AY.104	0.005952
ORF1ab/nsp14A2-B	508	L508L	ttG	ttA	3	3	AY.45	0.000365
ORF1ab/nsp14A2-B	508	L508L	ttG	ttA	3	3	AY.46	0.000312
ORF1ab/nsp14A2-B	508	L508F	ttG	ttT	3	3	B.1.1	0.000054
ORF1ab/nsp14A2-B	508	L508L	ttG	ttA	3	3	B.1.1.305	0.011583
ORF1ab/nsp14A2-B	508	L508L	Ttg	Ctg	3	3	B.1.1.317	0.001235
ORF1ab/nsp14A2-B	508	L508del	TTG	---	3	3	B.1.2	0.000026
ORF1ab/nsp14A2-B	508	L508I	TtG	AtT	1	2	All	0
ORF1ab/nsp14A2-B	508	L508I	TtG	AtA	1	2	All	0
ORF1ab/nsp14A2-B	508	L508L	ttG	ttA	2	2	AY.108	0.002205
ORF1ab/nsp14A2-B	508	L508F	ttG	ttT	2	2	AY.30	0.000791
ORF1ab/nsp14A2-B	508	L508W	tTg	tGg	2	2	AY.4	0.000003
ORF1ab/nsp14A2-B	508	L508del	TTG	---	2	2	AY.43	0.000009
ORF1ab/nsp14A2-B	508	L508L	ttG	ttA	2	2	AY.44	0.000012
ORF1ab/nsp14A2-B	508	L508F	ttG	ttT	1	2	AY.44	0.000006
ORF1ab/nsp14A2-B	508	L508F	ttG	ttC	1	2	AY.44	0.000006
ORF1ab/nsp14A2-B	508	L508L	ttG	ttA	1	2	AY.5	0.000021
ORF1ab/nsp14A2-B	508	L508L	Ttg	Ctg	1	2	AY.5	0.000021
ORF1ab/nsp14A2-B	508	L508F	ttG	ttT	2	2	AY.62	0.000871
ORF1ab/nsp14A2-B	508	L508F	ttG	ttT	2	2	AY.74	0.000231
ORF1ab/nsp14A2-B	508	L508L	ttG	ttA	1	2	B.1	0.000009
ORF1ab/nsp14A2-B	508	L508L	Ttg	Ctg	1	2	B.1	0.000009
ORF1ab/nsp14A2-B	508	L508I	TtG	AtT	1	2	B.1.1	0.000018
ORF1ab/nsp14A2-B	508	L508I	TtG	AtA	1	2	B.1.1	0.000018
ORF1ab/nsp14A2-B	508	L508L	Ttg	Ctg	2	2	B.1.1.170	0.002494
ORF1ab/nsp14A2-B	508	L508L	ttG	ttA	2	2	B.1.1.186	0.006873
ORF1ab/nsp14A2-B	508	L508V	Ttg	Gtg	2	2	B.1.1.7	0.000002
ORF1ab/nsp14A2-B	508	L508del2	TTg	--g	1	2	B.1.1.7	0.000001
ORF1ab/nsp14A2-B	508	L508del2	tTG	t--	1	2	B.1.1.7	0.000001
ORF1ab/nsp14A2-B	508	L508F	ttG	ttT	2	2	B.1.160.15	0.009901
ORF1ab/nsp14A2-B	508	L508L	ttG	ttA	2	2	B.1.329	0.001215
ORF1ab/nsp14A2-B	508	L508F	ttG	ttT	2	2	B.1.466.2	0.000782
ORF1ab/nsp14A2-B	508	L508L	ttG	ttA	2	2	B.1.621	0.000177
ORF1ab/nsp14A2-B	508	L508L	ttG	ttA	2	2	P.1.15	0.000465
ORF1ab/nsp14A2-B	508	L508del	TTG	---	2	2	P.1.15	0.000465
ORF1ab/nsp14A2-B	508	L508F	ttG	ttT	2	2	P.2	0.000373
ORF1ab/nsp14A2-B	508	L508L	ttG	ttA	1	1	A.2.5	0.000499
ORF1ab/nsp14A2-B	508	L508T	TTG	ACA	1	1	All	0
ORF1ab/nsp14A2-B	508	L508Q	TTg	CAg	1	1	All	0
ORF1ab/nsp14A2-B	508	L508L	ttG	ttA	1	1	AY.100	0.000046
ORF1ab/nsp14A2-B	508	L508W	tTg	tGg	1	1	AY.102	0.000027
ORF1ab/nsp14A2-B	508	L508L	ttG	ttA	1	1	AY.102	0.000027
ORF1ab/nsp14A2-B	508	L508del	TTG	---	1	1	AY.107	0.000466
ORF1ab/nsp14A2-B	508	L508L	ttG	ttA	1	1	AY.113	0.000142
ORF1ab/nsp14A2-B	508	L508del	TTG	---	1	1	AY.116	0.000287
ORF1ab/nsp14A2-B	508	L508del	TTG	---	1	1	AY.118	0.000063
ORF1ab/nsp14A2-B	508	L508L	ttG	ttA	1	1	AY.119	0.000035
ORF1ab/nsp14A2-B	508	L508F	ttG	ttT	1	1	AY.119	0.000035
ORF1ab/nsp14A2-B	508	L508del	TTG	---	1	1	AY.120	0.000037
ORF1ab/nsp14A2-B	508	L508L	ttG	ttA	1	1	AY.120	0.000037
ORF1ab/nsp14A2-B	508	L508V	TtG	GtA	1	1	AY.120.1	0.000321
ORF1ab/nsp14A2-B	508	L508L	ttG	ttA	1	1	AY.2	0.000356
ORF1ab/nsp14A2-B	508	L508L	ttG	ttA	1	1	AY.20	0.000039
ORF1ab/nsp14A2-B	508	L508V	Ttg	Gtg	1	1	AY.20	0.000039
ORF1ab/nsp14A2-B	508	L508L	Ttg	Ctg	1	1	AY.23	0.00007
ORF1ab/nsp14A2-B	508	L508F	ttG	ttT	1	1	AY.25	0.000006
ORF1ab/nsp14A2-B	508	L508del	TTG	---	1	1	AY.26	0.000028
ORF1ab/nsp14A2-B	508	L508L	ttG	ttA	1	1	AY.29	0.000016
ORF1ab/nsp14A2-B	508	L508del	TTG	---	1	1	AY.29	0.000016
ORF1ab/nsp14A2-B	508	L508L	ttG	ttA	1	1	AY.3	0.00001
ORF1ab/nsp14A2-B	508	L508del	TTG	---	1	1	AY.3	0.00001
ORF1ab/nsp14A2-B	508	L508L	ttG	ttA	1	1	AY.3.1	0.000085
ORF1ab/nsp14A2-B	508	L508L	ttG	ttA	1	1	AY.33	0.000067
ORF1ab/nsp14A2-B	508	L508M	Ttg	Atg	1	1	AY.4	0.000002
ORF1ab/nsp14A2-B	508	L508del	TTG	---	1	1	AY.4	0.000002
ORF1ab/nsp14A2-B	508	L508S	tTg	tCg	1	1	AY.4	0.000002
ORF1ab/nsp14A2-B	508	L508X	tTg	tAg	1	1	AY.4	0.000002
ORF1ab/nsp14A2-B	508	L508del2	tTG	t--	1	1	AY.4	0.000002
ORF1ab/nsp14A2-B	508	L508V	Ttg	Gtg	1	1	AY.4	0.000002
ORF1ab/nsp14A2-B	508	L508L	ttG	ttA	1	1	AY.4.2	0.000022
ORF1ab/nsp14A2-B	508	L508F	ttG	ttT	1	1	AY.4.2	0.000022
ORF1ab/nsp14A2-B	508	L508V	Ttg	Gtg	1	1	AY.4.2	0.000022
ORF1ab/nsp14A2-B	508	L508X	tTg	tAg	1	1	AY.44	0.000006
ORF1ab/nsp14A2-B	508	L508del	TTG	---	1	1	AY.44	0.000006
ORF1ab/nsp14A2-B	508	L508L	ttG	ttA	1	1	AY.48	0.000465
ORF1ab/nsp14A2-B	508	L508F	ttG	ttT	1	1	AY.5.4	0.000277
ORF1ab/nsp14A2-B	508	L508L	ttG	ttA	1	1	AY.53	0.000288
ORF1ab/nsp14A2-B	508	L508L	ttG	ttA	1	1	AY.6	0.000041
ORF1ab/nsp14A2-B	508	L508del	TTG	---	1	1	AY.62	0.000436
ORF1ab/nsp14A2-B	508	L508del	TTG	---	1	1	AY.66	0.00107
ORF1ab/nsp14A2-B	508	L508L	ttG	ttA	1	1	AY.68	0.000274
ORF1ab/nsp14A2-B	508	L508F	ttG	ttT	1	1	AY.69	0.000187
ORF1ab/nsp14A2-B	508	L508L	ttG	ttA	1	1	AY.7.1	0.000113
ORF1ab/nsp14A2-B	508	L508F	ttG	ttT	1	1	AY.70	0.000209
ORF1ab/nsp14A2-B	508	L508L	ttG	ttA	1	1	AY.85	0.000427
ORF1ab/nsp14A2-B	508	L508L	Ttg	Ctg	1	1	AY.9.1	0.000084
ORF1ab/nsp14A2-B	508	L508F	ttG	ttT	1	1	AY.9.2	0.000037
ORF1ab/nsp14A2-B	508	L508L	Ttg	Ctg	1	1	AY.92	0.000287
ORF1ab/nsp14A2-B	508	L508L	ttG	ttA	1	1	AY.96	0.002075
ORF1ab/nsp14A2-B	508	L508F	ttG	ttT	1	1	AY.96	0.002075
ORF1ab/nsp14A2-B	508	L508V	Ttg	Gtg	1	1	AY.98	0.000079
ORF1ab/nsp14A2-B	508	L508S	tTg	tCg	1	1	AY.98	0.000079
ORF1ab/nsp14A2-B	508	L508L	ttG	ttA	1	1	AY.98	0.000079
ORF1ab/nsp14A2-B	508	L508del	TTG	---	1	1	B.1	0.000009
ORF1ab/nsp14A2-B	508	L508M	Ttg	Atg	1	1	B.1.1	0.000018
ORF1ab/nsp14A2-B	508	L508S	tTg	tCg	1	1	B.1.1	0.000018
ORF1ab/nsp14A2-B	508	L508L	ttG	ttA	1	1	B.1.1.192	0.002309
ORF1ab/nsp14A2-B	508	L508F	ttG	ttT	1	1	B.1.1.28	0.000311
ORF1ab/nsp14A2-B	508	L508del	TTG	---	1	1	B.1.1.306	0.000438
ORF1ab/nsp14A2-B	508	L508F	ttG	ttT	1	1	B.1.1.317	0.000412
ORF1ab/nsp14A2-B	508	L508F	ttG	ttT	1	1	B.1.1.33	0.000421
ORF1ab/nsp14A2-B	508	L508S	tTg	tCg	1	1	B.1.1.346	0.029412
ORF1ab/nsp14A2-B	508	L508F	ttG	ttT	1	1	B.1.1.37	0.000193
ORF1ab/nsp14A2-B	508	L508S	tTg	tCg	1	1	B.1.1.39	0.00051
ORF1ab/nsp14A2-B	508	L508L	ttG	ttA	1	1	B.1.1.409	0.002833
ORF1ab/nsp14A2-B	508	L508L	Ttg	Ctg	1	1	B.1.1.420	0.001006
ORF1ab/nsp14A2-B	508	L508del	TTG	---	1	1	B.1.1.46	0.004367
ORF1ab/nsp14A2-B	508	L508F	ttG	ttC	1	1	B.1.1.465	0.015625
ORF1ab/nsp14A2-B	508	L508L	ttG	ttA	1	1	B.1.1.512	0.028571
ORF1ab/nsp14A2-B	508	L508F	ttG	ttT	1	1	B.1.1.519	0.00004
ORF1ab/nsp14A2-B	508	L508L	ttG	ttA	1	1	B.1.1.519	0.00004
ORF1ab/nsp14A2-B	508	L508Q	TTg	CAg	1	1	B.1.1.7	0.000001
ORF1ab/nsp14A2-B	508	L508F	ttG	ttT	1	1	B.1.110.3	0.000718
ORF1ab/nsp14A2-B	508	L508V	Ttg	Gtg	1	1	B.1.160	0.000031
ORF1ab/nsp14A2-B	508	L508S	tTg	tCg	1	1	B.1.160.8	0.001289
ORF1ab/nsp14A2-B	508	L508L	ttG	ttA	1	1	B.1.162	0.005025
ORF1ab/nsp14A2-B	508	L508F	ttG	ttT	1	1	B.1.177	0.000013
ORF1ab/nsp14A2-B	508	L508F	ttG	ttT	1	1	B.1.177.12	0.000152
ORF1ab/nsp14A2-B	508	L508L	ttG	ttA	1	1	B.1.177.15	0.000631
ORF1ab/nsp14A2-B	508	L508F	ttG	ttT	1	1	B.1.177.21	0.000076
ORF1ab/nsp14A2-B	508	L508L	Ttg	Ctg	1	1	B.1.177.23	0.003236
ORF1ab/nsp14A2-B	508	L508L	ttG	ttA	1	1	B.1.177.3	0.007634
ORF1ab/nsp14A2-B	508	L508L	Ttg	Ctg	1	1	B.1.177.73	0.000566
ORF1ab/nsp14A2-B	508	L508S	tTg	tCg	1	1	B.1.177.82	0.000477
ORF1ab/nsp14A2-B	508	L508F	ttG	ttT	1	1	B.1.177.9	0.001332
ORF1ab/nsp14A2-B	508	L508V	Ttg	Gtg	1	1	B.1.2	0.000009
ORF1ab/nsp14A2-B	508	L508W	tTg	tGg	1	1	B.1.2	0.000009
ORF1ab/nsp14A2-B	508	L508T	TTG	ACA	1	1	B.1.2	0.000009
ORF1ab/nsp14A2-B	508	L508F	ttG	ttT	1	1	B.1.221	0.000071
ORF1ab/nsp14A2-B	508	L508F	ttG	ttT	1	1	B.1.243	0.00007
ORF1ab/nsp14A2-B	508	L508F	ttG	ttT	1	1	B.1.324	0.001605
ORF1ab/nsp14A2-B	508	L508V	Ttg	Gtg	1	1	B.1.332	0.003497
ORF1ab/nsp14A2-B	508	L508M	Ttg	Atg	1	1	B.1.351	0.00003
ORF1ab/nsp14A2-B	508	L508F	ttG	ttT	1	1	B.1.36	0.000146
ORF1ab/nsp14A2-B	508	L508F	ttG	ttT	1	1	B.1.36.17	0.000494
ORF1ab/nsp14A2-B	508	L508V	Ttg	Gtg	1	1	B.1.36.29	0.000517
ORF1ab/nsp14A2-B	508	L508F	ttG	ttT	1	1	B.1.36.31	0.001751
ORF1ab/nsp14A2-B	508	L508L	ttG	ttA	1	1	B.1.399	0.001934
ORF1ab/nsp14A2-B	508	L508F	ttG	ttT	1	1	B.1.416	0.001269
ORF1ab/nsp14A2-B	508	L508L	Ttg	Ctg	1	1	B.1.427	0.00005
ORF1ab/nsp14A2-B	508	L508L	Ttg	Ctg	1	1	B.1.459	0.004082
ORF1ab/nsp14A2-B	508	L508M	Ttg	Atg	1	1	B.1.497	0.000315
ORF1ab/nsp14A2-B	508	L508F	ttG	ttC	1	1	B.1.497	0.000315
ORF1ab/nsp14A2-B	508	L508F	ttG	ttT	1	1	B.1.524	0.001406
ORF1ab/nsp14A2-B	508	L508W	tTg	tGg	1	1	B.1.526	0.000024
ORF1ab/nsp14A2-B	508	L508L	ttG	ttA	1	1	B.1.582	0.000491
ORF1ab/nsp14A2-B	508	L508M	Ttg	Atg	1	1	B.1.596	0.000087
ORF1ab/nsp14A2-B	508	L508del	TTG	---	1	1	B.1.596	0.000087
ORF1ab/nsp14A2-B	508	L508del	TTG	---	1	1	B.1.617.2	0.000004
ORF1ab/nsp14A2-B	508	L508V	Ttg	Gtg	1	1	B.1.617.2	0.000004
ORF1ab/nsp14A2-B	508	L508S	tTg	tCg	1	1	B.1.617.2	0.000004
ORF1ab/nsp14A2-B	508	L508S	tTg	tCg	1	1	B.1.621	0.000089
ORF1ab/nsp14A2-B	508	L508L	Ttg	Ctg	1	1	C.36.3	0.000567
ORF1ab/nsp14A2-B	508	L508F	ttG	ttT	1	1	D.2	0.000075
ORF1ab/nsp14A2-B	508	L508X	tTg	tAg	1	1	D.2	0.000075
ORF1ab/nsp14A2-B	508	L508del	TTG	---	1	1	P.1	0.000016
ORF1ab/nsp14A2-B	508	L508M	Ttg	Atg	1	1	P.1.1	0.000318
ORF1ab/nsp14A2-B	508	L508del	TTG	---	1	1	Q.1	0.000126
ORF1ab/nsp14A2-B	508	L508del	TTG	---	1	1	Q.8	0.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.