CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp14A2-B : CodonNum = 507

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF1ab/nsp14A2-B	507	S507S	S6432S	syn	agC	agT	6102	6102	1	19558-19560
ORF1ab/nsp14A2-B	507	S507G	S6432G	nonsyn	Agc	Ggc	112	110	0.982143	19558-19560
ORF1ab/nsp14A2-B	507	S507G	S6432G	nonsyn	AgC	GgT	112	2	0.0178571	19558-19560
ORF1ab/nsp14A2-B	507	S507I	S6432I	nonsyn	aGc	aTc	101	97	0.960396	19558-19560
ORF1ab/nsp14A2-B	507	S507I	S6432I	nonsyn	aGC	aTT	101	4	0.039604	19558-19560
ORF1ab/nsp14A2-B	507	S507N	S6432N	nonsyn	aGc	aAc	86	85	0.988372	19558-19560
ORF1ab/nsp14A2-B	507	S507N	S6432N	nonsyn	aGC	aAT	86	1	0.0116279	19558-19560
ORF1ab/nsp14A2-B	507	S507del	S6432del	del	AGC	---	38	38	1	19558-19560
ORF1ab/nsp14A2-B	507	S507R	S6432R	nonsyn	agC	agA	36	19	0.527778	19558-19560
ORF1ab/nsp14A2-B	507	S507R	S6432R	nonsyn	agC	agG	36	14	0.388889	19558-19560
ORF1ab/nsp14A2-B	507	S507R	S6432R	nonsyn	Agc	Cgc	36	3	0.0833333	19558-19560
ORF1ab/nsp14A2-B	507	S507C	S6432C	nonsyn	Agc	Tgc	18	17	0.944444	19558-19560
ORF1ab/nsp14A2-B	507	S507C	S6432C	nonsyn	AgC	TgT	18	1	0.0555556	19558-19560
ORF1ab/nsp14A2-B	507	S507del1	S6432del1	del	Agc	-gc	12	6	0.5	19558-19560
ORF1ab/nsp14A2-B	507	S507del1	S6432del1	del	AGC	-NN	12	3	0.25	19558-19560
ORF1ab/nsp14A2-B	507	S507del1	S6432del1	del	AgC	-gG	12	2	0.166667	19558-19560
ORF1ab/nsp14A2-B	507	S507del1	S6432del1	del	AGC	TA-	12	1	0.0833333	19558-19560
ORF1ab/nsp14A2-B	507	S507T	S6432T	nonsyn	aGc	aCc	6	6	1	19558-19560
ORF1ab/nsp14A2-B	507	S507del2	S6432del2	del	aGC	a--	4	3	0.75	19558-19560
ORF1ab/nsp14A2-B	507	S507F	S6432F	nonsyn	AGc	TTc	4	2	0.5	19558-19560
ORF1ab/nsp14A2-B	507	S507F	S6432F	nonsyn	AGC	TTT	4	2	0.5	19558-19560
ORF1ab/nsp14A2-B	507	S507del2	S6432del2	del	AGc	--c	4	1	0.25	19558-19560
ORF1ab/nsp14A2-B	507	S507Y	S6432Y	nonsyn	AGc	TAc	3	3	1	19558-19560
ORF1ab/nsp14A2-B	507	S507M	S6432M	nonsyn	aGC	aTG	2	2	1	19558-19560
ORF1ab/nsp14A2-B	507	S507K	S6432K	nonsyn	aGC	aAG	2	1	0.5	19558-19560
ORF1ab/nsp14A2-B	507	S507X	S6432X	nonsyn	AgC	TgA	2	1	0.5	19558-19560
ORF1ab/nsp14A2-B	507	S507X	S6432X	nonsyn	AGC	TAA	2	1	0.5	19558-19560
ORF1ab/nsp14A2-B	507	S507K	S6432K	nonsyn	aGC	aAA	2	1	0.5	19558-19560
ORF1ab/nsp14A2-B	507	S507W	S6432W	nonsyn	AgC	TgG	1	1	1	19558-19560
ORF1ab/nsp14A2-B	507	S507V	S6432V	nonsyn	AGc	GTc	1	1	1	19558-19560
ORF1ab/nsp14A2-B	507	S507L	S6432L	nonsyn	AGC	TTG	1	1	1	19558-19560

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF1ab/nsp14A2-B	507	S507S	agC	agT	6102	6102	All	0.001167
ORF1ab/nsp14A2-B	507	S507S	agC	agT	4457	4457	B.1.2	0.039246
ORF1ab/nsp14A2-B	507	S507S	agC	agT	833	833	B.1.1.7	0.000746
ORF1ab/nsp14A2-B	507	S507G	Agc	Ggc	110	112	All	0.000021
ORF1ab/nsp14A2-B	507	S507G	AgC	GgT	2	112	All	0
ORF1ab/nsp14A2-B	507	S507I	aGc	aTc	97	101	All	0.000019
ORF1ab/nsp14A2-B	507	S507I	aGC	aTT	4	101	All	0.000001
ORF1ab/nsp14A2-B	507	S507N	aGc	aAc	85	86	All	0.000016
ORF1ab/nsp14A2-B	507	S507N	aGC	aAT	1	86	All	0
ORF1ab/nsp14A2-B	507	S507S	agC	agT	83	83	B.1.617.2	0.000313
ORF1ab/nsp14A2-B	507	S507G	Agc	Ggc	60	61	B.1.1.7	0.000054
ORF1ab/nsp14A2-B	507	S507G	AgC	GgT	1	61	B.1.1.7	0.000001
ORF1ab/nsp14A2-B	507	S507N	aGc	aAc	57	57	B.1.1.7	0.000051
ORF1ab/nsp14A2-B	507	S507S	agC	agT	55	55	B.1.621	0.004869
ORF1ab/nsp14A2-B	507	S507S	agC	agT	49	49	B.1	0.000449
ORF1ab/nsp14A2-B	507	S507S	agC	agT	44	44	AY.44	0.000268
ORF1ab/nsp14A2-B	507	S507S	agC	agT	40	40	AY.118	0.002506
ORF1ab/nsp14A2-B	507	S507S	agC	agT	39	39	AY.103	0.000242
ORF1ab/nsp14A2-B	507	S507del	AGC	---	38	38	All	0.000007
ORF1ab/nsp14A2-B	507	S507S	agC	agT	37	37	B.1.177	0.000487
ORF1ab/nsp14A2-B	507	S507R	agC	agA	19	36	All	0.000004
ORF1ab/nsp14A2-B	507	S507R	agC	agG	14	36	All	0.000003
ORF1ab/nsp14A2-B	507	S507R	Agc	Cgc	3	36	All	0.000001
ORF1ab/nsp14A2-B	507	S507S	agC	agT	35	35	AY.43	0.000155
ORF1ab/nsp14A2-B	507	S507I	aGc	aTc	33	33	B.1.1.7	0.00003
ORF1ab/nsp14A2-B	507	S507S	agC	agT	32	32	AY.4	0.00005
ORF1ab/nsp14A2-B	507	S507S	agC	agT	25	25	AY.25	0.00015
ORF1ab/nsp14A2-B	507	S507S	agC	agT	22	22	P.1	0.000347
ORF1ab/nsp14A2-B	507	S507I	aGc	aTc	20	20	B.1.1.325	0.512821
ORF1ab/nsp14A2-B	507	S507S	agC	agT	19	19	B.1.36.17	0.009387
ORF1ab/nsp14A2-B	507	S507C	Agc	Tgc	17	18	All	0.000003
ORF1ab/nsp14A2-B	507	S507C	AgC	TgT	1	18	All	0
ORF1ab/nsp14A2-B	507	S507S	agC	agT	15	15	B.1.596	0.001307
ORF1ab/nsp14A2-B	507	S507S	agC	agT	14	14	B.1.1	0.000254
ORF1ab/nsp14A2-B	507	S507G	Agc	Ggc	14	14	B.1.429	0.000329
ORF1ab/nsp14A2-B	507	S507del1	Agc	-gc	6	12	All	0.000001
ORF1ab/nsp14A2-B	507	S507del1	AGC	-NN	3	12	All	0.000001
ORF1ab/nsp14A2-B	507	S507del1	AgC	-gG	2	12	All	0
ORF1ab/nsp14A2-B	507	S507del1	AGC	TA-	1	12	All	0
ORF1ab/nsp14A2-B	507	S507S	agC	agT	12	12	AY.54	0.001144
ORF1ab/nsp14A2-B	507	S507S	agC	agT	11	11	AY.23	0.000767
ORF1ab/nsp14A2-B	507	S507S	agC	agT	11	11	AY.75	0.000616
ORF1ab/nsp14A2-B	507	S507R	agC	agA	6	11	B.1.1.7	0.000005
ORF1ab/nsp14A2-B	507	S507R	agC	agG	4	11	B.1.1.7	0.000004
ORF1ab/nsp14A2-B	507	S507R	Agc	Cgc	1	11	B.1.1.7	0.000001
ORF1ab/nsp14A2-B	507	S507S	agC	agT	11	11	B.1.526	0.000259
ORF1ab/nsp14A2-B	507	S507S	agC	agT	11	11	P.1.10	0.002964
ORF1ab/nsp14A2-B	507	S507S	agC	agT	9	9	AY.39	0.000222
ORF1ab/nsp14A2-B	507	S507S	agC	agT	9	9	AY.4.2	0.000195
ORF1ab/nsp14A2-B	507	S507S	agC	agT	9	9	B.1.1.519	0.000357
ORF1ab/nsp14A2-B	507	S507S	agC	agT	9	9	B.1.177.32	0.012146
ORF1ab/nsp14A2-B	507	S507S	agC	agT	9	9	C.37	0.001045
ORF1ab/nsp14A2-B	507	S507S	agC	agT	8	8	AY.52	0.006515
ORF1ab/nsp14A2-B	507	S507S	agC	agT	8	8	AY.6	0.000329
ORF1ab/nsp14A2-B	507	S507S	agC	agT	8	8	AY.9.2	0.000294
ORF1ab/nsp14A2-B	507	S507S	agC	agT	7	7	AY.102	0.000186
ORF1ab/nsp14A2-B	507	S507del	AGC	---	7	7	B.1.1.7	0.000006
ORF1ab/nsp14A2-B	507	S507I	aGc	aTc	7	7	B.1.177.82	0.003341
ORF1ab/nsp14A2-B	507	S507I	aGc	aTc	4	7	B.1.2	0.000035
ORF1ab/nsp14A2-B	507	S507I	aGC	aTT	3	7	B.1.2	0.000026
ORF1ab/nsp14A2-B	507	S507S	agC	agT	7	7	B.1.214.2	0.004197
ORF1ab/nsp14A2-B	507	S507C	Agc	Tgc	7	7	B.1.497	0.002203
ORF1ab/nsp14A2-B	507	S507S	agC	agT	7	7	B.1.604	0.12069
ORF1ab/nsp14A2-B	507	S507S	agC	agT	7	7	Q.1	0.000884
ORF1ab/nsp14A2-B	507	S507T	aGc	aCc	6	6	All	0.000001
ORF1ab/nsp14A2-B	507	S507S	agC	agT	6	6	AY.29	0.000095
ORF1ab/nsp14A2-B	507	S507G	Agc	Ggc	6	6	AY.4	0.000009
ORF1ab/nsp14A2-B	507	S507S	agC	agT	6	6	B.1.177.60	0.001311
ORF1ab/nsp14A2-B	507	S507S	agC	agT	5	5	AY.106	0.001674
ORF1ab/nsp14A2-B	507	S507R	agC	agA	5	5	AY.25	0.00003
ORF1ab/nsp14A2-B	507	S507N	aGc	aAc	5	5	AY.29.1	0.001103
ORF1ab/nsp14A2-B	507	S507I	aGc	aTc	5	5	AY.4	0.000008
ORF1ab/nsp14A2-B	507	S507S	agC	agT	5	5	AY.47	0.000156
ORF1ab/nsp14A2-B	507	S507G	Agc	Ggc	5	5	B.1.427	0.000252
ORF1ab/nsp14A2-B	507	S507S	agC	agT	5	5	B.1.617.1	0.000645
ORF1ab/nsp14A2-B	507	S507del2	aGC	a--	3	4	All	0.000001
ORF1ab/nsp14A2-B	507	S507F	AGc	TTc	2	4	All	0
ORF1ab/nsp14A2-B	507	S507F	AGC	TTT	2	4	All	0
ORF1ab/nsp14A2-B	507	S507del2	AGc	--c	1	4	All	0
ORF1ab/nsp14A2-B	507	S507S	agC	agT	4	4	AY.120	0.000149
ORF1ab/nsp14A2-B	507	S507S	agC	agT	4	4	AY.14	0.000352
ORF1ab/nsp14A2-B	507	S507T	aGc	aCc	4	4	AY.4	0.000006
ORF1ab/nsp14A2-B	507	S507S	agC	agT	4	4	AY.45	0.000487
ORF1ab/nsp14A2-B	507	S507S	agC	agT	4	4	AY.65	0.002132
ORF1ab/nsp14A2-B	507	S507I	aGc	aTc	3	4	B.1.1	0.000054
ORF1ab/nsp14A2-B	507	S507I	aGC	aTT	1	4	B.1.1	0.000018
ORF1ab/nsp14A2-B	507	S507S	agC	agT	4	4	B.1.234	0.000528
ORF1ab/nsp14A2-B	507	S507R	agC	agG	4	4	B.1.258	0.000266
ORF1ab/nsp14A2-B	507	S507S	agC	agT	4	4	B.1.258	0.000266
ORF1ab/nsp14A2-B	507	S507I	aGc	aTc	4	4	B.1.429	0.000094
ORF1ab/nsp14A2-B	507	S507R	agC	agG	2	3		0.111111
ORF1ab/nsp14A2-B	507	S507R	agC	agA	1	3		0.055556
ORF1ab/nsp14A2-B	507	S507S	agC	agT	3	3	A	0.001161
ORF1ab/nsp14A2-B	507	S507Y	AGc	TAc	3	3	All	0.000001
ORF1ab/nsp14A2-B	507	S507I	aGc	aTc	3	3	AY.103	0.000019
ORF1ab/nsp14A2-B	507	S507G	Agc	Ggc	3	3	AY.103	0.000019
ORF1ab/nsp14A2-B	507	S507S	agC	agT	3	3	AY.26	0.000085
ORF1ab/nsp14A2-B	507	S507S	agC	agT	3	3	AY.3	0.00003
ORF1ab/nsp14A2-B	507	S507C	Agc	Tgc	3	3	AY.34.1	0.00153
ORF1ab/nsp14A2-B	507	S507S	agC	agT	3	3	AY.55	0.002752
ORF1ab/nsp14A2-B	507	S507S	agC	agT	3	3	AY.75.1	0.000541
ORF1ab/nsp14A2-B	507	S507G	Agc	Ggc	3	3	B.1	0.000027
ORF1ab/nsp14A2-B	507	S507S	agC	agT	3	3	B.1.1.352	0.09375
ORF1ab/nsp14A2-B	507	S507del	AGC	---	3	3	B.1.2	0.000026
ORF1ab/nsp14A2-B	507	S507C	Agc	Tgc	2	2		0.111111
ORF1ab/nsp14A2-B	507	S507S	agC	agT	2	2		0.111111
ORF1ab/nsp14A2-B	507	S507N	aGc	aAc	2	2		0.111111
ORF1ab/nsp14A2-B	507	S507I	aGc	aTc	2	2		0.111111
ORF1ab/nsp14A2-B	507	S507M	aGC	aTG	2	2		0.111111
ORF1ab/nsp14A2-B	507	S507del2	aGC	a--	2	2		0.111111
ORF1ab/nsp14A2-B	507	S507del	AGC	---	2	2		0.111111
ORF1ab/nsp14A2-B	507	S507K	aGC	aAG	1	2		0.055556
ORF1ab/nsp14A2-B	507	S507X	AgC	TgA	1	2		0.055556
ORF1ab/nsp14A2-B	507	S507K	aGC	aAA	1	2		0.055556
ORF1ab/nsp14A2-B	507	S507X	AGC	TAA	1	2		0.055556
ORF1ab/nsp14A2-B	507	S507M	aGC	aTG	2	2	All	0
ORF1ab/nsp14A2-B	507	S507K	aGC	aAA	1	2	All	0
ORF1ab/nsp14A2-B	507	S507X	AgC	TgA	1	2	All	0
ORF1ab/nsp14A2-B	507	S507K	aGC	aAG	1	2	All	0
ORF1ab/nsp14A2-B	507	S507X	AGC	TAA	1	2	All	0
ORF1ab/nsp14A2-B	507	S507S	agC	agT	2	2	AY.27	0.000129
ORF1ab/nsp14A2-B	507	S507I	aGc	aTc	2	2	AY.3	0.00002
ORF1ab/nsp14A2-B	507	S507del1	Agc	-gc	2	2	AY.34.1	0.00102
ORF1ab/nsp14A2-B	507	S507del	AGC	---	2	2	AY.4	0.000003
ORF1ab/nsp14A2-B	507	S507N	aGc	aAc	2	2	AY.4	0.000003
ORF1ab/nsp14A2-B	507	S507R	agC	agA	1	2	AY.4	0.000002
ORF1ab/nsp14A2-B	507	S507R	agC	agG	1	2	AY.4	0.000002
ORF1ab/nsp14A2-B	507	S507del	AGC	---	2	2	AY.43	0.000009
ORF1ab/nsp14A2-B	507	S507G	Agc	Ggc	2	2	AY.5	0.000041
ORF1ab/nsp14A2-B	507	S507I	aGc	aTc	2	2	AY.53	0.000575
ORF1ab/nsp14A2-B	507	S507S	agC	agT	2	2	AY.61	0.00021
ORF1ab/nsp14A2-B	507	S507S	agC	agT	2	2	AY.9	0.000135
ORF1ab/nsp14A2-B	507	S507N	aGc	aAc	2	2	AY.98	0.000158
ORF1ab/nsp14A2-B	507	S507S	agC	agT	2	2	AY.98.1	0.000097
ORF1ab/nsp14A2-B	507	S507C	Agc	Tgc	1	2	B.1.1	0.000018
ORF1ab/nsp14A2-B	507	S507C	AgC	TgT	1	2	B.1.1	0.000018
ORF1ab/nsp14A2-B	507	S507F	AGc	TTc	1	2	B.1.1	0.000018
ORF1ab/nsp14A2-B	507	S507F	AGC	TTT	1	2	B.1.1	0.000018
ORF1ab/nsp14A2-B	507	S507S	agC	agT	2	2	B.1.1.374	0.004751
ORF1ab/nsp14A2-B	507	S507S	agC	agT	2	2	B.1.1.507	0.017391
ORF1ab/nsp14A2-B	507	S507R	agC	agA	2	2	B.1.1.519	0.000079
ORF1ab/nsp14A2-B	507	S507S	agC	agT	2	2	B.1.177.73	0.001133
ORF1ab/nsp14A2-B	507	S507R	Agc	Cgc	2	2	B.1.2	0.000018
ORF1ab/nsp14A2-B	507	S507G	Agc	Ggc	2	2	B.1.2	0.000018
ORF1ab/nsp14A2-B	507	S507S	agC	agT	2	2	B.1.351	0.000059
ORF1ab/nsp14A2-B	507	S507S	agC	agT	2	2	B.1.429	0.000047
ORF1ab/nsp14A2-B	507	S507G	Agc	Ggc	2	2	B.1.621	0.000177
ORF1ab/nsp14A2-B	507	S507S	agC	agT	2	2	B.1.623	0.001073
ORF1ab/nsp14A2-B	507	S507S	agC	agT	2	2	B.1.634	0.006849
ORF1ab/nsp14A2-B	507	S507S	agC	agT	2	2	C.11	0.021277
ORF1ab/nsp14A2-B	507	S507del	AGC	---	2	2	P.1.15	0.000465
ORF1ab/nsp14A2-B	507	S507S	agC	agT	2	2	Q.7	0.002222
ORF1ab/nsp14A2-B	507	S507L	AGC	TTG	1	1		0.055556
ORF1ab/nsp14A2-B	507	S507W	AgC	TgG	1	1		0.055556
ORF1ab/nsp14A2-B	507	S507F	AGc	TTc	1	1		0.055556
ORF1ab/nsp14A2-B	507	S507Y	AGc	TAc	1	1		0.055556
ORF1ab/nsp14A2-B	507	S507S	agC	agT	1	1	A.2.5	0.000499
ORF1ab/nsp14A2-B	507	S507L	AGC	TTG	1	1	All	0
ORF1ab/nsp14A2-B	507	S507W	AgC	TgG	1	1	All	0
ORF1ab/nsp14A2-B	507	S507V	AGc	GTc	1	1	All	0
ORF1ab/nsp14A2-B	507	S507S	agC	agT	1	1	AY.100	0.000046
ORF1ab/nsp14A2-B	507	S507G	Agc	Ggc	1	1	AY.102	0.000027
ORF1ab/nsp14A2-B	507	S507R	agC	agA	1	1	AY.103	0.000006
ORF1ab/nsp14A2-B	507	S507del1	AgC	-gG	1	1	AY.105	0.000643
ORF1ab/nsp14A2-B	507	S507S	agC	agT	1	1	AY.105	0.000643
ORF1ab/nsp14A2-B	507	S507del	AGC	---	1	1	AY.107	0.000466
ORF1ab/nsp14A2-B	507	S507C	Agc	Tgc	1	1	AY.110	0.000113
ORF1ab/nsp14A2-B	507	S507S	agC	agT	1	1	AY.110	0.000113
ORF1ab/nsp14A2-B	507	S507G	Agc	Ggc	1	1	AY.110	0.000113
ORF1ab/nsp14A2-B	507	S507I	aGc	aTc	1	1	AY.111	0.000183
ORF1ab/nsp14A2-B	507	S507S	agC	agT	1	1	AY.111	0.000183
ORF1ab/nsp14A2-B	507	S507del	AGC	---	1	1	AY.116	0.000287
ORF1ab/nsp14A2-B	507	S507S	agC	agT	1	1	AY.116	0.000287
ORF1ab/nsp14A2-B	507	S507S	agC	agT	1	1	AY.117	0.000085
ORF1ab/nsp14A2-B	507	S507del	AGC	---	1	1	AY.118	0.000063
ORF1ab/nsp14A2-B	507	S507del	AGC	---	1	1	AY.120	0.000037
ORF1ab/nsp14A2-B	507	S507del1	Agc	-gc	1	1	AY.120	0.000037
ORF1ab/nsp14A2-B	507	S507N	aGc	aAc	1	1	AY.120.1	0.000321
ORF1ab/nsp14A2-B	507	S507S	agC	agT	1	1	AY.120.2	0.001285
ORF1ab/nsp14A2-B	507	S507I	aGc	aTc	1	1	AY.13	0.000161
ORF1ab/nsp14A2-B	507	S507S	agC	agT	1	1	AY.13	0.000161
ORF1ab/nsp14A2-B	507	S507S	agC	agT	1	1	AY.16.1	0.00047
ORF1ab/nsp14A2-B	507	S507S	agC	agT	1	1	AY.20	0.000039
ORF1ab/nsp14A2-B	507	S507S	agC	agT	1	1	AY.21	0.001898
ORF1ab/nsp14A2-B	507	S507G	Agc	Ggc	1	1	AY.23	0.00007
ORF1ab/nsp14A2-B	507	S507G	Agc	Ggc	1	1	AY.25	0.000006
ORF1ab/nsp14A2-B	507	S507I	aGc	aTc	1	1	AY.25	0.000006
ORF1ab/nsp14A2-B	507	S507T	aGc	aCc	1	1	AY.25	0.000006
ORF1ab/nsp14A2-B	507	S507N	aGc	aAc	1	1	AY.25	0.000006
ORF1ab/nsp14A2-B	507	S507del	AGC	---	1	1	AY.26	0.000028
ORF1ab/nsp14A2-B	507	S507N	aGc	aAc	1	1	AY.29	0.000016
ORF1ab/nsp14A2-B	507	S507del1	Agc	-gc	1	1	AY.29	0.000016
ORF1ab/nsp14A2-B	507	S507del	AGC	---	1	1	AY.3	0.00001
ORF1ab/nsp14A2-B	507	S507N	aGc	aAc	1	1	AY.3	0.00001
ORF1ab/nsp14A2-B	507	S507G	Agc	Ggc	1	1	AY.3	0.00001
ORF1ab/nsp14A2-B	507	S507S	agC	agT	1	1	AY.3.1	0.000085
ORF1ab/nsp14A2-B	507	S507S	agC	agT	1	1	AY.30	0.000396
ORF1ab/nsp14A2-B	507	S507N	aGc	aAc	1	1	AY.33	0.000067
ORF1ab/nsp14A2-B	507	S507G	Agc	Ggc	1	1	AY.33	0.000067
ORF1ab/nsp14A2-B	507	S507del	AGC	---	1	1	AY.34.1	0.00051
ORF1ab/nsp14A2-B	507	S507del1	AGC	-NN	1	1	AY.39	0.000025
ORF1ab/nsp14A2-B	507	S507F	AGC	TTT	1	1	AY.39.1	0.00004
ORF1ab/nsp14A2-B	507	S507S	agC	agT	1	1	AY.39.1	0.00004
ORF1ab/nsp14A2-B	507	S507S	agC	agT	1	1	AY.4.3	0.000842
ORF1ab/nsp14A2-B	507	S507S	agC	agT	1	1	AY.42	0.00004
ORF1ab/nsp14A2-B	507	S507I	aGc	aTc	1	1	AY.43	0.000004
ORF1ab/nsp14A2-B	507	S507G	Agc	Ggc	1	1	AY.43	0.000004
ORF1ab/nsp14A2-B	507	S507I	aGc	aTc	1	1	AY.44	0.000006
ORF1ab/nsp14A2-B	507	S507N	aGc	aAc	1	1	AY.44	0.000006
ORF1ab/nsp14A2-B	507	S507del	AGC	---	1	1	AY.44	0.000006
ORF1ab/nsp14A2-B	507	S507S	agC	agT	1	1	AY.46.2	0.000635
ORF1ab/nsp14A2-B	507	S507I	aGc	aTc	1	1	AY.5	0.000021
ORF1ab/nsp14A2-B	507	S507S	agC	agT	1	1	AY.5.4	0.000277
ORF1ab/nsp14A2-B	507	S507S	agC	agT	1	1	AY.51	0.000909
ORF1ab/nsp14A2-B	507	S507G	Agc	Ggc	1	1	AY.6	0.000041
ORF1ab/nsp14A2-B	507	S507del	AGC	---	1	1	AY.62	0.000436
ORF1ab/nsp14A2-B	507	S507del	AGC	---	1	1	AY.66	0.00107
ORF1ab/nsp14A2-B	507	S507del	AGC	---	1	1	AY.67	0.000464
ORF1ab/nsp14A2-B	507	S507S	agC	agT	1	1	AY.69	0.000187
ORF1ab/nsp14A2-B	507	S507S	agC	agT	1	1	AY.72	0.001361
ORF1ab/nsp14A2-B	507	S507N	aGc	aAc	1	1	AY.75	0.000056
ORF1ab/nsp14A2-B	507	S507S	agC	agT	1	1	AY.78	0.001541
ORF1ab/nsp14A2-B	507	S507N	aGc	aAc	1	1	AY.79	0.001211
ORF1ab/nsp14A2-B	507	S507S	agC	agT	1	1	AY.85	0.000427
ORF1ab/nsp14A2-B	507	S507G	Agc	Ggc	1	1	AY.9.2	0.000037
ORF1ab/nsp14A2-B	507	S507S	agC	agT	1	1	AY.97	0.001701
ORF1ab/nsp14A2-B	507	S507del	AGC	---	1	1	B.1	0.000009
ORF1ab/nsp14A2-B	507	S507R	agC	agA	1	1	B.1	0.000009
ORF1ab/nsp14A2-B	507	S507N	aGc	aAc	1	1	B.1	0.000009
ORF1ab/nsp14A2-B	507	S507del	AGC	---	1	1	B.1.1	0.000018
ORF1ab/nsp14A2-B	507	S507G	Agc	Ggc	1	1	B.1.1	0.000018
ORF1ab/nsp14A2-B	507	S507S	agC	agT	1	1	B.1.1.129	0.009174
ORF1ab/nsp14A2-B	507	S507S	agC	agT	1	1	B.1.1.214	0.000055
ORF1ab/nsp14A2-B	507	S507del1	AGC	-NN	1	1	B.1.1.218	0.007692
ORF1ab/nsp14A2-B	507	S507S	agC	agT	1	1	B.1.1.222	0.000204
ORF1ab/nsp14A2-B	507	S507R	agC	agA	1	1	B.1.1.277	0.000759
ORF1ab/nsp14A2-B	507	S507S	agC	agT	1	1	B.1.1.303	0.002762
ORF1ab/nsp14A2-B	507	S507del	AGC	---	1	1	B.1.1.306	0.000438
ORF1ab/nsp14A2-B	507	S507S	agC	agT	1	1	B.1.1.33	0.000421
ORF1ab/nsp14A2-B	507	S507del1	Agc	-gc	1	1	B.1.1.409	0.002833
ORF1ab/nsp14A2-B	507	S507S	agC	agT	1	1	B.1.1.409	0.002833
ORF1ab/nsp14A2-B	507	S507S	agC	agT	1	1	B.1.1.419	0.007407
ORF1ab/nsp14A2-B	507	S507del	AGC	---	1	1	B.1.1.46	0.004367
ORF1ab/nsp14A2-B	507	S507del2	aGC	a--	1	1	B.1.1.7	0.000001
ORF1ab/nsp14A2-B	507	S507del1	Agc	-gc	1	1	B.1.1.7	0.000001
ORF1ab/nsp14A2-B	507	S507C	Agc	Tgc	1	1	B.1.1.7	0.000001
ORF1ab/nsp14A2-B	507	S507N	aGc	aAc	1	1	B.1.1.70	0.000341
ORF1ab/nsp14A2-B	507	S507del2	AGc	--c	1	1	B.1.1.70	0.000341
ORF1ab/nsp14A2-B	507	S507S	agC	agT	1	1	B.1.1.70	0.000341
ORF1ab/nsp14A2-B	507	S507I	aGc	aTc	1	1	B.1.158	0.02381
ORF1ab/nsp14A2-B	507	S507N	aGc	aAc	1	1	B.1.160	0.000031
ORF1ab/nsp14A2-B	507	S507S	agC	agT	1	1	B.1.160	0.000031
ORF1ab/nsp14A2-B	507	S507S	agC	agT	1	1	B.1.160.29	0.004219
ORF1ab/nsp14A2-B	507	S507V	AGc	GTc	1	1	B.1.177	0.000013
ORF1ab/nsp14A2-B	507	S507S	agC	agT	1	1	B.1.177.21	0.000076
ORF1ab/nsp14A2-B	507	S507Y	AGc	TAc	1	1	B.1.177.32	0.00135
ORF1ab/nsp14A2-B	507	S507S	agC	agT	1	1	B.1.177.35	0.000691
ORF1ab/nsp14A2-B	507	S507S	agC	agT	1	1	B.1.177.55	0.002331
ORF1ab/nsp14A2-B	507	S507G	AgC	GgT	1	1	B.1.177.7	0.000165
ORF1ab/nsp14A2-B	507	S507N	aGc	aAc	1	1	B.1.177.76	0.002494
ORF1ab/nsp14A2-B	507	S507del1	AGC	TA-	1	1	B.1.2	0.000009
ORF1ab/nsp14A2-B	507	S507I	aGc	aTc	1	1	B.1.221	0.000071
ORF1ab/nsp14A2-B	507	S507I	aGc	aTc	1	1	B.1.234	0.000132
ORF1ab/nsp14A2-B	507	S507S	agC	agT	1	1	B.1.237	0.004975
ORF1ab/nsp14A2-B	507	S507R	agC	agG	1	1	B.1.240	0.000216
ORF1ab/nsp14A2-B	507	S507S	agC	agT	1	1	B.1.258.17	0.000104
ORF1ab/nsp14A2-B	507	S507S	agC	agT	1	1	B.1.280	0.007143
ORF1ab/nsp14A2-B	507	S507R	agC	agG	1	1	B.1.291	0.019231
ORF1ab/nsp14A2-B	507	S507G	Agc	Ggc	1	1	B.1.349	0.000715
ORF1ab/nsp14A2-B	507	S507G	Agc	Ggc	1	1	B.1.351	0.00003
ORF1ab/nsp14A2-B	507	S507R	agC	agG	1	1	B.1.351	0.00003
ORF1ab/nsp14A2-B	507	S507S	agC	agT	1	1	B.1.36.18	0.00042
ORF1ab/nsp14A2-B	507	S507S	agC	agT	1	1	B.1.36.29	0.000517
ORF1ab/nsp14A2-B	507	S507N	aGC	aAT	1	1	B.1.36.29	0.000517
ORF1ab/nsp14A2-B	507	S507S	agC	agT	1	1	B.1.36.7	0.004
ORF1ab/nsp14A2-B	507	S507S	agC	agT	1	1	B.1.375	0.00082
ORF1ab/nsp14A2-B	507	S507N	aGc	aAc	1	1	B.1.433	0.003195
ORF1ab/nsp14A2-B	507	S507S	agC	agT	1	1	B.1.465	0.003802
ORF1ab/nsp14A2-B	507	S507S	agC	agT	1	1	B.1.466.2	0.000391
ORF1ab/nsp14A2-B	507	S507N	aGc	aAc	1	1	B.1.497	0.000315
ORF1ab/nsp14A2-B	507	S507R	agC	agA	1	1	B.1.497	0.000315
ORF1ab/nsp14A2-B	507	S507I	aGc	aTc	1	1	B.1.564	0.000426
ORF1ab/nsp14A2-B	507	S507del1	AGC	-NN	1	1	B.1.568	0.001111
ORF1ab/nsp14A2-B	507	S507S	agC	agT	1	1	B.1.577	0.000687
ORF1ab/nsp14A2-B	507	S507S	agC	agT	1	1	B.1.582	0.000491
ORF1ab/nsp14A2-B	507	S507del	AGC	---	1	1	B.1.596	0.000087
ORF1ab/nsp14A2-B	507	S507N	aGc	aAc	1	1	B.1.597	0.00463
ORF1ab/nsp14A2-B	507	S507T	aGc	aCc	1	1	B.1.612	0.002653
ORF1ab/nsp14A2-B	507	S507Y	AGc	TAc	1	1	B.1.617.1	0.000129
ORF1ab/nsp14A2-B	507	S507I	aGc	aTc	1	1	B.1.617.1	0.000129
ORF1ab/nsp14A2-B	507	S507del	AGC	---	1	1	B.1.617.2	0.000004
ORF1ab/nsp14A2-B	507	S507C	Agc	Tgc	1	1	B.1.617.2	0.000004
ORF1ab/nsp14A2-B	507	S507N	aGc	aAc	1	1	B.1.617.2	0.000004
ORF1ab/nsp14A2-B	507	S507G	Agc	Ggc	1	1	B.1.617.2	0.000004
ORF1ab/nsp14A2-B	507	S507del1	AgC	-gG	1	1	B.1.617.2	0.000004
ORF1ab/nsp14A2-B	507	S507C	Agc	Tgc	1	1	B.1.621	0.000089
ORF1ab/nsp14A2-B	507	S507S	agC	agT	1	1	B.1.637	0.000073
ORF1ab/nsp14A2-B	507	S507S	agC	agT	1	1	B.6.6	0.000889
ORF1ab/nsp14A2-B	507	S507S	agC	agT	1	1	D.2	0.000075
ORF1ab/nsp14A2-B	507	S507N	aGc	aAc	1	1	P.1	0.000016
ORF1ab/nsp14A2-B	507	S507I	aGc	aTc	1	1	P.1	0.000016
ORF1ab/nsp14A2-B	507	S507del	AGC	---	1	1	P.1	0.000016
ORF1ab/nsp14A2-B	507	S507S	agC	agT	1	1	P.1.14	0.000048
ORF1ab/nsp14A2-B	507	S507del	AGC	---	1	1	Q.1	0.000126
ORF1ab/nsp14A2-B	507	S507del	AGC	---	1	1	Q.8	0.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.