CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp14A2-B | 50 | T50T | T5975T | syn | acC | acT | 2743 | 2660 | 0.969741 | 18187-18189 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp14A2-B | 50 | T50T | acC | acT | 2660 | 2743 | All | 0.000509 |
ORF1ab/nsp14A2-B | 50 | T50T | acC | acT | 511 | 511 | C.36.3 | 0.289847 |
ORF1ab/nsp14A2-B | 50 | T50T | acC | acT | 323 | 323 | C.36.3.1 | 0.877717 |
ORF1ab/nsp14A2-B | 50 | T50T | acC | acT | 252 | 252 | B.1.517 | 0.1076 |
ORF1ab/nsp14A2-B | 50 | T50T | acC | acT | 195 | 207 | B.1.1.7 | 0.000175 |
ORF1ab/nsp14A2-B | 50 | T50T | acC | acT | 120 | 123 | B.1.617.2 | 0.000452 |
ORF1ab/nsp14A2-B | 50 | T50T | acC | acT | 119 | 119 | AY.5 | 0.002457 |
ORF1ab/nsp14A2-B | 50 | T50T | acC | acT | 102 | 112 | AY.4 | 0.000159 |
ORF1ab/nsp14A2-B | 50 | T50T | acC | acT | 91 | 91 | B.1.1.437 | 0.947917 |
ORF1ab/nsp14A2-B | 50 | T50T | acC | acT | 89 | 89 | B.1.1.302 | 0.184647 |
ORF1ab/nsp14A2-B | 50 | T50T | acC | acT | 87 | 87 | P.1.7 | 0.027778 |
ORF1ab/nsp14A2-B | 50 | T50T | acC | acT | 63 | 66 | B.1 | 0.000577 |
ORF1ab/nsp14A2-B | 50 | T50T | acC | acT | 40 | 43 | AY.3 | 0.000398 |
ORF1ab/nsp14A2-B | 50 | T50T | acC | acT | 41 | 42 | AY.44 | 0.00025 |
ORF1ab/nsp14A2-B | 50 | T50T | acC | acT | 39 | 39 | AY.43 | 0.000173 |
ORF1ab/nsp14A2-B | 50 | T50T | acC | acT | 23 | 38 | AY.25 | 0.000138 |
ORF1ab/nsp14A2-B | 50 | T50T | acC | acT | 38 | 38 | B.1.427 | 0.001919 |
ORF1ab/nsp14A2-B | 50 | T50T | acC | acT | 36 | 36 | B.1.2 | 0.000317 |
ORF1ab/nsp14A2-B | 50 | T50T | acC | acT | 31 | 34 | B.1.1.519 | 0.001231 |
ORF1ab/nsp14A2-B | 50 | T50T | acC | acT | 31 | 31 | B.1.1 | 0.000562 |
ORF1ab/nsp14A2-B | 50 | T50T | acC | acT | 30 | 31 | C.36 | 0.027322 |
ORF1ab/nsp14A2-B | 50 | T50T | acC | acT | 28 | 28 | B.1.221.3 | 0.023333 |
ORF1ab/nsp14A2-B | 50 | T50T | acC | acT | 23 | 23 | P.1.14 | 0.001099 |
ORF1ab/nsp14A2-B | 50 | T50T | acC | acT | 19 | 21 | AY.20 | 0.000738 |
ORF1ab/nsp14A2-B | 50 | T50T | acC | acT | 19 | 19 | AY.29 | 0.0003 |
ORF1ab/nsp14A2-B | 50 | T50T | acC | acT | 14 | 19 | AY.39 | 0.000346 |
ORF1ab/nsp14A2-B | 50 | T50T | acC | acT | 14 | 17 | AY.103 | 0.000087 |
ORF1ab/nsp14A2-B | 50 | T50T | acC | acT | 17 | 17 | P.1 | 0.000268 |
ORF1ab/nsp14A2-B | 50 | T50T | acC | acT | 16 | 16 | B.1.177 | 0.000211 |
ORF1ab/nsp14A2-B | 50 | T50T | acC | acT | 16 | 16 | B.1.526 | 0.000376 |
ORF1ab/nsp14A2-B | 50 | T50T | acC | acT | 15 | 15 | B.1.1.374 | 0.035629 |
ORF1ab/nsp14A2-B | 50 | T50T | acC | acT | 15 | 15 | B.1.160 | 0.000468 |
ORF1ab/nsp14A2-B | 50 | T50T | acC | acT | 15 | 15 | B.1.429 | 0.000353 |
ORF1ab/nsp14A2-B | 50 | T50T | acC | acT | 11 | 11 | AY.27 | 0.000712 |
ORF1ab/nsp14A2-B | 50 | T50T | acC | acT | 10 | 10 | AY.14 | 0.00088 |
ORF1ab/nsp14A2-B | 50 | T50T | acC | acT | 9 | 9 | B.1.177.20 | 0.013657 |
ORF1ab/nsp14A2-B | 50 | T50T | acC | acT | 8 | 8 | AY.80 | 0.009029 |
ORF1ab/nsp14A2-B | 50 | T50T | acC | acT | 7 | 8 | AY.99.2 | 0.000645 |
ORF1ab/nsp14A2-B | 50 | T50T | acC | acT | 8 | 8 | B.1.177.86 | 0.001468 |
ORF1ab/nsp14A2-B | 50 | T50T | acC | acT | 6 | 8 | B.1.525 | 0.000679 |
ORF1ab/nsp14A2-B | 50 | T50T | acC | acT | 7 | 7 | B.1.1.434 | 0.00244 |
ORF1ab/nsp14A2-B | 50 | T50T | acC | acT | 6 | 6 | AY.102 | 0.000159 |
ORF1ab/nsp14A2-B | 50 | T50T | acC | acT | 6 | 6 | AY.9.2 | 0.00022 |
ORF1ab/nsp14A2-B | 50 | T50T | acC | acT | 5 | 5 | AY.116 | 0.001434 |
ORF1ab/nsp14A2-B | 50 | T50T | acC | acT | 3 | 5 | AY.119 | 0.000106 |
ORF1ab/nsp14A2-B | 50 | T50T | acC | acT | 5 | 5 | AY.4.2 | 0.000108 |
ORF1ab/nsp14A2-B | 50 | T50T | acC | acT | 4 | 4 | AY.1 | 0.001583 |
ORF1ab/nsp14A2-B | 50 | T50T | acC | acT | 4 | 4 | AY.4.5 | 0.00043 |
ORF1ab/nsp14A2-B | 50 | T50T | acC | acT | 4 | 4 | B.1.637 | 0.000292 |
ORF1ab/nsp14A2-B | 50 | T50T | acC | acT | 3 | 3 | A.2.5 | 0.001497 |
ORF1ab/nsp14A2-B | 50 | T50T | acC | acT | 3 | 3 | AY.6 | 0.000123 |
ORF1ab/nsp14A2-B | 50 | T50T | acC | acT | 3 | 3 | AY.79 | 0.003632 |
ORF1ab/nsp14A2-B | 50 | T50T | acC | acT | 3 | 3 | B.1.1.318 | 0.000905 |
ORF1ab/nsp14A2-B | 50 | T50T | acC | acT | 3 | 3 | D.2 | 0.000225 |
ORF1ab/nsp14A2-B | 50 | T50T | acC | acT | 2 | 2 | AY.100 | 0.000092 |
ORF1ab/nsp14A2-B | 50 | T50T | acC | acT | 2 | 2 | AY.121 | 0.000271 |
ORF1ab/nsp14A2-B | 50 | T50T | acC | acT | 2 | 2 | AY.29.1 | 0.000441 |
ORF1ab/nsp14A2-B | 50 | T50T | acC | acT | 2 | 2 | AY.98.1 | 0.000097 |
ORF1ab/nsp14A2-B | 50 | T50T | acC | acT | 2 | 2 | B.1.1.294 | 0.002532 |
ORF1ab/nsp14A2-B | 50 | T50T | acC | acT | 2 | 2 | B.1.177.83 | 0.002963 |
ORF1ab/nsp14A2-B | 50 | T50T | acC | acT | 1 | 2 | B.1.221 | 0.000071 |
ORF1ab/nsp14A2-B | 50 | T50T | acC | acT | 2 | 2 | B.1.234 | 0.000264 |
ORF1ab/nsp14A2-B | 50 | T50T | acC | acT | 2 | 2 | B.1.311 | 0.000549 |
ORF1ab/nsp14A2-B | 50 | T50T | acC | acT | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp14A2-B | 50 | T50T | acC | acT | 2 | 2 | B.1.351.5 | 0.001199 |
ORF1ab/nsp14A2-B | 50 | T50T | acC | acT | 2 | 2 | B.1.596 | 0.000174 |
ORF1ab/nsp14A2-B | 50 | T50T | acC | acT | 2 | 2 | B.1.617.1 | 0.000258 |
ORF1ab/nsp14A2-B | 50 | T50T | acC | acT | 2 | 2 | C.37 | 0.000232 |
ORF1ab/nsp14A2-B | 50 | T50T | acC | acT | 1 | 1 | A.21 | 0.00277 |
ORF1ab/nsp14A2-B | 50 | T50T | acC | acT | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp14A2-B | 50 | T50T | acC | acT | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp14A2-B | 50 | T50T | acC | acT | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp14A2-B | 50 | T50T | acC | acT | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp14A2-B | 50 | T50T | acC | acT | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp14A2-B | 50 | T50T | acC | acT | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp14A2-B | 50 | T50T | acC | acT | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp14A2-B | 50 | T50T | acC | acT | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp14A2-B | 50 | T50T | acC | acT | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp14A2-B | 50 | T50T | acC | acT | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp14A2-B | 50 | T50T | acC | acT | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp14A2-B | 50 | T50T | acC | acT | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp14A2-B | 50 | T50T | acC | acT | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp14A2-B | 50 | T50T | acC | acT | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp14A2-B | 50 | T50T | acC | acT | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp14A2-B | 50 | T50T | acC | acT | 1 | 1 | AY.64 | 0.000595 |
ORF1ab/nsp14A2-B | 50 | T50T | acC | acT | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp14A2-B | 50 | T50T | acC | acT | 1 | 1 | B | 0.000128 |
ORF1ab/nsp14A2-B | 50 | T50T | acC | acT | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp14A2-B | 50 | T50T | acC | acT | 1 | 1 | B.1.1.159 | 0.004673 |
ORF1ab/nsp14A2-B | 50 | T50T | acC | acT | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp14A2-B | 50 | T50T | acC | acT | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp14A2-B | 50 | T50T | acC | acT | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp14A2-B | 50 | T50T | acC | acT | 1 | 1 | B.1.1.442 | 0.018519 |
ORF1ab/nsp14A2-B | 50 | T50T | acC | acT | 1 | 1 | B.1.110 | 0.004525 |
ORF1ab/nsp14A2-B | 50 | T50T | acC | acT | 1 | 1 | B.1.131 | 0.008772 |
ORF1ab/nsp14A2-B | 50 | T50T | acC | acT | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp14A2-B | 50 | T50T | acC | acT | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp14A2-B | 50 | T50T | acC | acT | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp14A2-B | 50 | T50T | acC | acT | 1 | 1 | B.1.324 | 0.001605 |
ORF1ab/nsp14A2-B | 50 | T50T | acC | acT | 1 | 1 | B.1.336 | 0.002439 |
ORF1ab/nsp14A2-B | 50 | T50T | acC | acT | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp14A2-B | 50 | T50T | acC | acT | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp14A2-B | 50 | T50T | acC | acT | 1 | 1 | B.1.375 | 0.00082 |
ORF1ab/nsp14A2-B | 50 | T50T | acC | acT | 1 | 1 | B.1.417 | 0.028571 |
ORF1ab/nsp14A2-B | 50 | T50T | acC | acT | 1 | 1 | B.1.509 | 0.000866 |
ORF1ab/nsp14A2-B | 50 | T50T | acC | acT | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp14A2-B | 50 | T50T | acC | acT | 1 | 1 | B.1.617.3 | 0.002985 |
ORF1ab/nsp14A2-B | 50 | T50T | acC | acT | 1 | 1 | B.1.636 | 0.006711 |
ORF1ab/nsp14A2-B | 50 | T50T | acC | acT | 1 | 1 | C.39 | 0.018868 |
ORF1ab/nsp14A2-B | 50 | T50T | acC | acT | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp14A2-B | 50 | T50T | acC | acT | 1 | 1 | Q.8 | 0.000165 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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