CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp14A2-B : CodonNum = 50

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF1ab/nsp14A2-B	50	T50T	T5975T	syn	acC	acT	2743	2660	0.969741	18187-18189
ORF1ab/nsp14A2-B	50	T50T	T5975T	syn	acC	acA	2743	82	0.0298943	18187-18189
ORF1ab/nsp14A2-B	50	T50T	T5975T	syn	acC	acG	2743	1	0.000364564	18187-18189
ORF1ab/nsp14A2-B	50	T50N	T5975N	nonsyn	aCc	aAc	277	277	1	18187-18189
ORF1ab/nsp14A2-B	50	T50I	T5975I	nonsyn	aCc	aTc	130	128	0.984615	18187-18189
ORF1ab/nsp14A2-B	50	T50I	T5975I	nonsyn	aCC	aTA	130	2	0.0153846	18187-18189
ORF1ab/nsp14A2-B	50	T50A	T5975A	nonsyn	Acc	Gcc	55	52	0.945455	18187-18189
ORF1ab/nsp14A2-B	50	T50A	T5975A	nonsyn	AcC	GcA	55	3	0.0545455	18187-18189
ORF1ab/nsp14A2-B	50	T50del	T5975del	del	ACC	---	25	25	1	18187-18189
ORF1ab/nsp14A2-B	50	T50S	T5975S	nonsyn	Acc	Tcc	20	15	0.75	18187-18189
ORF1ab/nsp14A2-B	50	T50S	T5975S	nonsyn	aCc	aGc	20	4	0.2	18187-18189
ORF1ab/nsp14A2-B	50	T50S	T5975S	nonsyn	AcC	TcT	20	1	0.05	18187-18189
ORF1ab/nsp14A2-B	50	T50V	T5975V	nonsyn	ACc	GTc	4	2	0.5	18187-18189
ORF1ab/nsp14A2-B	50	T50V	T5975V	nonsyn	ACC	GTA	4	2	0.5	18187-18189
ORF1ab/nsp14A2-B	50	T50P	T5975P	nonsyn	Acc	Ccc	2	2	1	18187-18189
ORF1ab/nsp14A2-B	50	T50G	T5975G	nonsyn	ACC	GGA	2	1	0.5	18187-18189
ORF1ab/nsp14A2-B	50	T50G	T5975G	nonsyn	ACc	GGc	2	1	0.5	18187-18189
ORF1ab/nsp14A2-B	50	T50C	T5975C	nonsyn	ACc	TGc	1	1	1	18187-18189
ORF1ab/nsp14A2-B	50	T50R	T5975R	nonsyn	aCC	aGA	1	1	1	18187-18189
ORF1ab/nsp14A2-B	50	T50del1	T5975del1	del	aCc	a-c	1	1	1	18187-18189

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF1ab/nsp14A2-B	50	T50T	acC	acT	2660	2743	All	0.000509
ORF1ab/nsp14A2-B	50	T50T	acC	acA	82	2743	All	0.000016
ORF1ab/nsp14A2-B	50	T50T	acC	acG	1	2743	All	0
ORF1ab/nsp14A2-B	50	T50T	acC	acT	511	511	C.36.3	0.289847
ORF1ab/nsp14A2-B	50	T50T	acC	acT	323	323	C.36.3.1	0.877717
ORF1ab/nsp14A2-B	50	T50N	aCc	aAc	277	277	All	0.000053
ORF1ab/nsp14A2-B	50	T50T	acC	acT	252	252	B.1.517	0.1076
ORF1ab/nsp14A2-B	50	T50N	aCc	aAc	224	224	AY.3	0.002228
ORF1ab/nsp14A2-B	50	T50T	acC	acT	195	207	B.1.1.7	0.000175
ORF1ab/nsp14A2-B	50	T50T	acC	acA	12	207	B.1.1.7	0.000011
ORF1ab/nsp14A2-B	50	T50I	aCc	aTc	128	130	All	0.000024
ORF1ab/nsp14A2-B	50	T50I	aCC	aTA	2	130	All	0
ORF1ab/nsp14A2-B	50	T50T	acC	acT	120	123	B.1.617.2	0.000452
ORF1ab/nsp14A2-B	50	T50T	acC	acA	3	123	B.1.617.2	0.000011
ORF1ab/nsp14A2-B	50	T50T	acC	acT	119	119	AY.5	0.002457
ORF1ab/nsp14A2-B	50	T50T	acC	acT	102	112	AY.4	0.000159
ORF1ab/nsp14A2-B	50	T50T	acC	acA	9	112	AY.4	0.000014
ORF1ab/nsp14A2-B	50	T50T	acC	acG	1	112	AY.4	0.000002
ORF1ab/nsp14A2-B	50	T50T	acC	acT	91	91	B.1.1.437	0.947917
ORF1ab/nsp14A2-B	50	T50T	acC	acT	89	89	B.1.1.302	0.184647
ORF1ab/nsp14A2-B	50	T50T	acC	acT	87	87	P.1.7	0.027778
ORF1ab/nsp14A2-B	50	T50T	acC	acT	63	66	B.1	0.000577
ORF1ab/nsp14A2-B	50	T50T	acC	acA	3	66	B.1	0.000027
ORF1ab/nsp14A2-B	50	T50A	Acc	Gcc	52	55	All	0.00001
ORF1ab/nsp14A2-B	50	T50A	AcC	GcA	3	55	All	0.000001
ORF1ab/nsp14A2-B	50	T50I	aCc	aTc	44	44	AY.5	0.000909
ORF1ab/nsp14A2-B	50	T50T	acC	acT	40	43	AY.3	0.000398
ORF1ab/nsp14A2-B	50	T50T	acC	acA	3	43	AY.3	0.00003
ORF1ab/nsp14A2-B	50	T50T	acC	acT	41	42	AY.44	0.00025
ORF1ab/nsp14A2-B	50	T50T	acC	acA	1	42	AY.44	0.000006
ORF1ab/nsp14A2-B	50	T50T	acC	acT	39	39	AY.43	0.000173
ORF1ab/nsp14A2-B	50	T50T	acC	acT	23	38	AY.25	0.000138
ORF1ab/nsp14A2-B	50	T50T	acC	acA	15	38	AY.25	0.00009
ORF1ab/nsp14A2-B	50	T50T	acC	acT	38	38	B.1.427	0.001919
ORF1ab/nsp14A2-B	50	T50T	acC	acT	36	36	B.1.2	0.000317
ORF1ab/nsp14A2-B	50	T50T	acC	acT	31	34	B.1.1.519	0.001231
ORF1ab/nsp14A2-B	50	T50T	acC	acA	3	34	B.1.1.519	0.000119
ORF1ab/nsp14A2-B	50	T50T	acC	acT	31	31	B.1.1	0.000562
ORF1ab/nsp14A2-B	50	T50T	acC	acT	30	31	C.36	0.027322
ORF1ab/nsp14A2-B	50	T50T	acC	acA	1	31	C.36	0.000911
ORF1ab/nsp14A2-B	50	T50T	acC	acT	28	28	B.1.221.3	0.023333
ORF1ab/nsp14A2-B	50	T50del	ACC	---	25	25	All	0.000005
ORF1ab/nsp14A2-B	50	T50A	Acc	Gcc	25	25	B.1	0.000229
ORF1ab/nsp14A2-B	50	T50T	acC	acT	23	23	P.1.14	0.001099
ORF1ab/nsp14A2-B	50	T50T	acC	acT	19	21	AY.20	0.000738
ORF1ab/nsp14A2-B	50	T50T	acC	acA	2	21	AY.20	0.000078
ORF1ab/nsp14A2-B	50	T50S	Acc	Tcc	15	20	All	0.000003
ORF1ab/nsp14A2-B	50	T50S	aCc	aGc	4	20	All	0.000001
ORF1ab/nsp14A2-B	50	T50S	AcC	TcT	1	20	All	0
ORF1ab/nsp14A2-B	50	T50T	acC	acT	19	19	AY.29	0.0003
ORF1ab/nsp14A2-B	50	T50T	acC	acT	14	19	AY.39	0.000346
ORF1ab/nsp14A2-B	50	T50T	acC	acA	5	19	AY.39	0.000124
ORF1ab/nsp14A2-B	50	T50T	acC	acT	14	17	AY.103	0.000087
ORF1ab/nsp14A2-B	50	T50T	acC	acA	3	17	AY.103	0.000019
ORF1ab/nsp14A2-B	50	T50T	acC	acT	17	17	P.1	0.000268
ORF1ab/nsp14A2-B	50	T50T	acC	acT	16	16	B.1.177	0.000211
ORF1ab/nsp14A2-B	50	T50T	acC	acT	16	16	B.1.526	0.000376
ORF1ab/nsp14A2-B	50	T50T	acC	acT	15	15	B.1.1.374	0.035629
ORF1ab/nsp14A2-B	50	T50T	acC	acT	15	15	B.1.160	0.000468
ORF1ab/nsp14A2-B	50	T50T	acC	acT	15	15	B.1.429	0.000353
ORF1ab/nsp14A2-B	50	T50N	aCc	aAc	12	12	B.1.1.63	0.00463
ORF1ab/nsp14A2-B	50	T50T	acC	acT	11	11	AY.27	0.000712
ORF1ab/nsp14A2-B	50	T50T	acC	acT	10	10	AY.14	0.00088
ORF1ab/nsp14A2-B	50	T50N	aCc	aAc	10	10	P.1	0.000158
ORF1ab/nsp14A2-B	50	T50S	Acc	Tcc	9	9	B.1.1.242	0.391304
ORF1ab/nsp14A2-B	50	T50T	acC	acT	9	9	B.1.177.20	0.013657
ORF1ab/nsp14A2-B	50	T50I	aCc	aTc	9	9	B.1.369	0.002567
ORF1ab/nsp14A2-B	50	T50N	aCc	aAc	8	8	AY.42	0.000322
ORF1ab/nsp14A2-B	50	T50I	aCc	aTc	8	8	AY.43	0.000035
ORF1ab/nsp14A2-B	50	T50T	acC	acT	8	8	AY.80	0.009029
ORF1ab/nsp14A2-B	50	T50T	acC	acT	7	8	AY.99.2	0.000645
ORF1ab/nsp14A2-B	50	T50T	acC	acA	1	8	AY.99.2	0.000092
ORF1ab/nsp14A2-B	50	T50del	ACC	---	8	8	B.1.1.7	0.000007
ORF1ab/nsp14A2-B	50	T50T	acC	acT	8	8	B.1.177.86	0.001468
ORF1ab/nsp14A2-B	50	T50T	acC	acT	6	8	B.1.525	0.000679
ORF1ab/nsp14A2-B	50	T50T	acC	acA	2	8	B.1.525	0.000226
ORF1ab/nsp14A2-B	50	T50T	acC	acT	7	7	B.1.1.434	0.00244
ORF1ab/nsp14A2-B	50	T50T	acC	acT	6	6	AY.102	0.000159
ORF1ab/nsp14A2-B	50	T50T	acC	acT	6	6	AY.9.2	0.00022
ORF1ab/nsp14A2-B	50	T50T	acC	acT	5	5	AY.116	0.001434
ORF1ab/nsp14A2-B	50	T50T	acC	acT	3	5	AY.119	0.000106
ORF1ab/nsp14A2-B	50	T50T	acC	acA	2	5	AY.119	0.000071
ORF1ab/nsp14A2-B	50	T50A	Acc	Gcc	5	5	AY.3	0.00005
ORF1ab/nsp14A2-B	50	T50I	aCc	aTc	5	5	AY.4	0.000008
ORF1ab/nsp14A2-B	50	T50T	acC	acT	5	5	AY.4.2	0.000108
ORF1ab/nsp14A2-B	50	T50I	aCc	aTc	5	5	B.1.1.7	0.000004
ORF1ab/nsp14A2-B	50	T50A	Acc	Gcc	5	5	B.1.36	0.00073
ORF1ab/nsp14A2-B	50	T50N	aCc	aAc	5	5	B.1.617.2	0.000019
ORF1ab/nsp14A2-B	50	T50I	aCc	aTc	2	4		0.111111
ORF1ab/nsp14A2-B	50	T50I	aCC	aTA	2	4		0.111111
ORF1ab/nsp14A2-B	50	T50V	ACC	GTA	2	4		0.111111
ORF1ab/nsp14A2-B	50	T50V	ACc	GTc	2	4		0.111111
ORF1ab/nsp14A2-B	50	T50A	Acc	Gcc	2	4		0.111111
ORF1ab/nsp14A2-B	50	T50A	AcC	GcA	2	4		0.111111
ORF1ab/nsp14A2-B	50	T50V	ACC	GTA	2	4	All	0
ORF1ab/nsp14A2-B	50	T50V	ACc	GTc	2	4	All	0
ORF1ab/nsp14A2-B	50	T50T	acC	acT	4	4	AY.1	0.001583
ORF1ab/nsp14A2-B	50	T50I	aCc	aTc	4	4	AY.27	0.000259
ORF1ab/nsp14A2-B	50	T50T	acC	acT	4	4	AY.4.5	0.00043
ORF1ab/nsp14A2-B	50	T50I	aCc	aTc	4	4	AY.44	0.000024
ORF1ab/nsp14A2-B	50	T50T	acC	acA	4	4	B.1.36.8	0.004
ORF1ab/nsp14A2-B	50	T50T	acC	acT	4	4	B.1.637	0.000292
ORF1ab/nsp14A2-B	50	T50T	acC	acT	3	3	A.2.5	0.001497
ORF1ab/nsp14A2-B	50	T50I	aCc	aTc	3	3	AY.29	0.000047
ORF1ab/nsp14A2-B	50	T50T	acC	acT	3	3	AY.6	0.000123
ORF1ab/nsp14A2-B	50	T50T	acC	acT	3	3	AY.79	0.003632
ORF1ab/nsp14A2-B	50	T50I	aCc	aTc	3	3	B.1	0.000027
ORF1ab/nsp14A2-B	50	T50I	aCc	aTc	3	3	B.1.1	0.000054
ORF1ab/nsp14A2-B	50	T50N	aCc	aAc	3	3	B.1.1	0.000054
ORF1ab/nsp14A2-B	50	T50T	acC	acT	3	3	B.1.1.318	0.000905
ORF1ab/nsp14A2-B	50	T50I	aCc	aTc	3	3	B.1.1.519	0.000119
ORF1ab/nsp14A2-B	50	T50I	aCc	aTc	3	3	B.1.429	0.000071
ORF1ab/nsp14A2-B	50	T50I	aCc	aTc	3	3	B.1.617.2	0.000011
ORF1ab/nsp14A2-B	50	T50T	acC	acT	3	3	D.2	0.000225
ORF1ab/nsp14A2-B	50	T50T	acC	acA	2	2		0.111111
ORF1ab/nsp14A2-B	50	T50S	Acc	Tcc	1	2		0.055556
ORF1ab/nsp14A2-B	50	T50S	aCc	aGc	1	2		0.055556
ORF1ab/nsp14A2-B	50	T50A	Acc	Gcc	2	2	A.2.5	0.000998
ORF1ab/nsp14A2-B	50	T50P	Acc	Ccc	2	2	All	0
ORF1ab/nsp14A2-B	50	T50G	ACC	GGA	1	2	All	0
ORF1ab/nsp14A2-B	50	T50G	ACc	GGc	1	2	All	0
ORF1ab/nsp14A2-B	50	T50T	acC	acT	2	2	AY.100	0.000092
ORF1ab/nsp14A2-B	50	T50I	aCc	aTc	2	2	AY.102	0.000053
ORF1ab/nsp14A2-B	50	T50T	acC	acT	2	2	AY.121	0.000271
ORF1ab/nsp14A2-B	50	T50del	ACC	---	2	2	AY.25	0.000012
ORF1ab/nsp14A2-B	50	T50T	acC	acT	2	2	AY.29.1	0.000441
ORF1ab/nsp14A2-B	50	T50I	aCc	aTc	2	2	AY.39	0.000049
ORF1ab/nsp14A2-B	50	T50T	acC	acA	2	2	AY.39.1	0.000079
ORF1ab/nsp14A2-B	50	T50A	Acc	Gcc	2	2	AY.4	0.000003
ORF1ab/nsp14A2-B	50	T50I	aCc	aTc	2	2	AY.4.2	0.000043
ORF1ab/nsp14A2-B	50	T50del	ACC	---	2	2	AY.4.5	0.000215
ORF1ab/nsp14A2-B	50	T50N	aCc	aAc	2	2	AY.44	0.000012
ORF1ab/nsp14A2-B	50	T50N	aCc	aAc	2	2	AY.45	0.000243
ORF1ab/nsp14A2-B	50	T50T	acC	acT	2	2	AY.98.1	0.000097
ORF1ab/nsp14A2-B	50	T50del	ACC	---	2	2	B.1.1	0.000036
ORF1ab/nsp14A2-B	50	T50T	acC	acT	2	2	B.1.1.294	0.002532
ORF1ab/nsp14A2-B	50	T50A	Acc	Gcc	2	2	B.1.1.444	0.285714
ORF1ab/nsp14A2-B	50	T50T	acC	acT	2	2	B.1.177.83	0.002963
ORF1ab/nsp14A2-B	50	T50T	acC	acA	1	2	B.1.221	0.000071
ORF1ab/nsp14A2-B	50	T50T	acC	acT	1	2	B.1.221	0.000071
ORF1ab/nsp14A2-B	50	T50T	acC	acT	2	2	B.1.234	0.000264
ORF1ab/nsp14A2-B	50	T50T	acC	acT	2	2	B.1.311	0.000549
ORF1ab/nsp14A2-B	50	T50T	acC	acT	2	2	B.1.351	0.000059
ORF1ab/nsp14A2-B	50	T50T	acC	acT	2	2	B.1.351.5	0.001199
ORF1ab/nsp14A2-B	50	T50G	ACC	GGA	1	2	B.1.565	0.00081
ORF1ab/nsp14A2-B	50	T50A	Acc	Gcc	1	2	B.1.565	0.00081
ORF1ab/nsp14A2-B	50	T50A	AcC	GcA	1	2	B.1.565	0.00081
ORF1ab/nsp14A2-B	50	T50G	ACc	GGc	1	2	B.1.565	0.00081
ORF1ab/nsp14A2-B	50	T50T	acC	acT	2	2	B.1.596	0.000174
ORF1ab/nsp14A2-B	50	T50T	acC	acT	2	2	B.1.617.1	0.000258
ORF1ab/nsp14A2-B	50	T50A	Acc	Gcc	2	2	B.1.617.2	0.000008
ORF1ab/nsp14A2-B	50	T50S	Acc	Tcc	1	2	B.1.617.2	0.000004
ORF1ab/nsp14A2-B	50	T50S	aCc	aGc	1	2	B.1.617.2	0.000004
ORF1ab/nsp14A2-B	50	T50T	acC	acT	2	2	C.37	0.000232
ORF1ab/nsp14A2-B	50	T50C	ACc	TGc	1	1		0.055556
ORF1ab/nsp14A2-B	50	T50N	aCc	aAc	1	1	A.2.4	0.003367
ORF1ab/nsp14A2-B	50	T50T	acC	acT	1	1	A.21	0.00277
ORF1ab/nsp14A2-B	50	T50T	acC	acT	1	1	AD.2	0.000219
ORF1ab/nsp14A2-B	50	T50del1	aCc	a-c	1	1	All	0
ORF1ab/nsp14A2-B	50	T50C	ACc	TGc	1	1	All	0
ORF1ab/nsp14A2-B	50	T50R	aCC	aGA	1	1	All	0
ORF1ab/nsp14A2-B	50	T50T	acC	acA	1	1	AY.10	0.00053
ORF1ab/nsp14A2-B	50	T50S	Acc	Tcc	1	1	AY.100	0.000046
ORF1ab/nsp14A2-B	50	T50S	aCc	aGc	1	1	AY.102	0.000027
ORF1ab/nsp14A2-B	50	T50P	Acc	Ccc	1	1	AY.103	0.000006
ORF1ab/nsp14A2-B	50	T50A	Acc	Gcc	1	1	AY.108	0.001103
ORF1ab/nsp14A2-B	50	T50I	aCc	aTc	1	1	AY.108	0.001103
ORF1ab/nsp14A2-B	50	T50T	acC	acT	1	1	AY.111	0.000183
ORF1ab/nsp14A2-B	50	T50I	aCc	aTc	1	1	AY.114	0.000231
ORF1ab/nsp14A2-B	50	T50I	aCc	aTc	1	1	AY.117	0.000085
ORF1ab/nsp14A2-B	50	T50T	acC	acT	1	1	AY.117	0.000085
ORF1ab/nsp14A2-B	50	T50T	acC	acT	1	1	AY.118	0.000063
ORF1ab/nsp14A2-B	50	T50N	aCc	aAc	1	1	AY.119	0.000035
ORF1ab/nsp14A2-B	50	T50T	acC	acT	1	1	AY.120	0.000037
ORF1ab/nsp14A2-B	50	T50T	acC	acT	1	1	AY.13	0.000161
ORF1ab/nsp14A2-B	50	T50A	Acc	Gcc	1	1	AY.20	0.000039
ORF1ab/nsp14A2-B	50	T50N	aCc	aAc	1	1	AY.20	0.000039
ORF1ab/nsp14A2-B	50	T50T	acC	acT	1	1	AY.23	0.00007
ORF1ab/nsp14A2-B	50	T50T	acC	acT	1	1	AY.24	0.000431
ORF1ab/nsp14A2-B	50	T50I	aCc	aTc	1	1	AY.25	0.000006
ORF1ab/nsp14A2-B	50	T50N	aCc	aAc	1	1	AY.25	0.000006
ORF1ab/nsp14A2-B	50	T50T	acC	acT	1	1	AY.26	0.000028
ORF1ab/nsp14A2-B	50	T50I	aCc	aTc	1	1	AY.3	0.00001
ORF1ab/nsp14A2-B	50	T50T	acC	acT	1	1	AY.33	0.000067
ORF1ab/nsp14A2-B	50	T50T	acC	acT	1	1	AY.34	0.000097
ORF1ab/nsp14A2-B	50	T50A	Acc	Gcc	1	1	AY.34	0.000097
ORF1ab/nsp14A2-B	50	T50del	ACC	---	1	1	AY.36	0.000148
ORF1ab/nsp14A2-B	50	T50N	aCc	aAc	1	1	AY.4	0.000002
ORF1ab/nsp14A2-B	50	T50S	Acc	Tcc	1	1	AY.4	0.000002
ORF1ab/nsp14A2-B	50	T50del	ACC	---	1	1	AY.4	0.000002
ORF1ab/nsp14A2-B	50	T50T	acC	acA	1	1	AY.4.2.1	0.000149
ORF1ab/nsp14A2-B	50	T50T	acC	acT	1	1	AY.4.4	0.000409
ORF1ab/nsp14A2-B	50	T50del	ACC	---	1	1	AY.43	0.000004
ORF1ab/nsp14A2-B	50	T50S	AcC	TcT	1	1	AY.43	0.000004
ORF1ab/nsp14A2-B	50	T50A	Acc	Gcc	1	1	AY.43	0.000004
ORF1ab/nsp14A2-B	50	T50T	acC	acA	1	1	AY.5.3	0.000337
ORF1ab/nsp14A2-B	50	T50T	acC	acT	1	1	AY.53	0.000288
ORF1ab/nsp14A2-B	50	T50T	acC	acT	1	1	AY.54	0.000095
ORF1ab/nsp14A2-B	50	T50I	aCc	aTc	1	1	AY.58	0.000907
ORF1ab/nsp14A2-B	50	T50T	acC	acT	1	1	AY.59	0.00053
ORF1ab/nsp14A2-B	50	T50I	aCc	aTc	1	1	AY.6	0.000041
ORF1ab/nsp14A2-B	50	T50T	acC	acT	1	1	AY.64	0.000595
ORF1ab/nsp14A2-B	50	T50T	acC	acA	1	1	AY.75	0.000056
ORF1ab/nsp14A2-B	50	T50del	ACC	---	1	1	AY.75	0.000056
ORF1ab/nsp14A2-B	50	T50T	acC	acT	1	1	AY.9	0.000068
ORF1ab/nsp14A2-B	50	T50I	aCc	aTc	1	1	AY.94	0.000443
ORF1ab/nsp14A2-B	50	T50T	acC	acT	1	1	B	0.000128
ORF1ab/nsp14A2-B	50	T50N	aCc	aAc	1	1	B.1	0.000009
ORF1ab/nsp14A2-B	50	T50del1	aCc	a-c	1	1	B.1	0.000009
ORF1ab/nsp14A2-B	50	T50del	ACC	---	1	1	B.1	0.000009
ORF1ab/nsp14A2-B	50	T50A	Acc	Gcc	1	1	B.1.1	0.000018
ORF1ab/nsp14A2-B	50	T50T	acC	acT	1	1	B.1.1.1	0.000327
ORF1ab/nsp14A2-B	50	T50I	aCc	aTc	1	1	B.1.1.153	0.001095
ORF1ab/nsp14A2-B	50	T50T	acC	acT	1	1	B.1.1.159	0.004673
ORF1ab/nsp14A2-B	50	T50T	acC	acA	1	1	B.1.1.176	0.000439
ORF1ab/nsp14A2-B	50	T50I	aCc	aTc	1	1	B.1.1.189	0.001513
ORF1ab/nsp14A2-B	50	T50T	acC	acT	1	1	B.1.1.214	0.000055
ORF1ab/nsp14A2-B	50	T50I	aCc	aTc	1	1	B.1.1.219	0.005
ORF1ab/nsp14A2-B	50	T50T	acC	acT	1	1	B.1.1.306	0.000438
ORF1ab/nsp14A2-B	50	T50I	aCc	aTc	1	1	B.1.1.329	0.003846
ORF1ab/nsp14A2-B	50	T50T	acC	acT	1	1	B.1.1.33	0.000421
ORF1ab/nsp14A2-B	50	T50N	aCc	aAc	1	1	B.1.1.409	0.002833
ORF1ab/nsp14A2-B	50	T50T	acC	acT	1	1	B.1.1.442	0.018519
ORF1ab/nsp14A2-B	50	T50N	aCc	aAc	1	1	B.1.1.7	0.000001
ORF1ab/nsp14A2-B	50	T50T	acC	acT	1	1	B.1.110	0.004525
ORF1ab/nsp14A2-B	50	T50I	aCc	aTc	1	1	B.1.110.3	0.000718
ORF1ab/nsp14A2-B	50	T50T	acC	acT	1	1	B.1.131	0.008772
ORF1ab/nsp14A2-B	50	T50S	Acc	Tcc	1	1	B.1.146	0.004237
ORF1ab/nsp14A2-B	50	T50I	aCc	aTc	1	1	B.1.160.22	0.006757
ORF1ab/nsp14A2-B	50	T50del	ACC	---	1	1	B.1.177	0.000013
ORF1ab/nsp14A2-B	50	T50T	acC	acT	1	1	B.1.177.4	0.000211
ORF1ab/nsp14A2-B	50	T50T	acC	acT	1	1	B.1.177.44	0.000519
ORF1ab/nsp14A2-B	50	T50del	ACC	---	1	1	B.1.177.68	0.015152
ORF1ab/nsp14A2-B	50	T50I	aCc	aTc	1	1	B.1.177.77	0.000726
ORF1ab/nsp14A2-B	50	T50A	Acc	Gcc	1	1	B.1.177.87	0.000728
ORF1ab/nsp14A2-B	50	T50N	aCc	aAc	1	1	B.1.221	0.000071
ORF1ab/nsp14A2-B	50	T50I	aCc	aTc	1	1	B.1.221	0.000071
ORF1ab/nsp14A2-B	50	T50P	Acc	Ccc	1	1	B.1.240	0.000216
ORF1ab/nsp14A2-B	50	T50del	ACC	---	1	1	B.1.258	0.000067
ORF1ab/nsp14A2-B	50	T50T	acC	acT	1	1	B.1.258	0.000067
ORF1ab/nsp14A2-B	50	T50T	acC	acA	1	1	B.1.258.17	0.000104
ORF1ab/nsp14A2-B	50	T50I	aCc	aTc	1	1	B.1.298	0.002114
ORF1ab/nsp14A2-B	50	T50T	acC	acT	1	1	B.1.324	0.001605
ORF1ab/nsp14A2-B	50	T50T	acC	acT	1	1	B.1.336	0.002439
ORF1ab/nsp14A2-B	50	T50I	aCc	aTc	1	1	B.1.348	0.018182
ORF1ab/nsp14A2-B	50	T50T	acC	acT	1	1	B.1.36	0.000146
ORF1ab/nsp14A2-B	50	T50T	acC	acT	1	1	B.1.36.18	0.00042
ORF1ab/nsp14A2-B	50	T50S	Acc	Tcc	1	1	B.1.362	0.001541
ORF1ab/nsp14A2-B	50	T50T	acC	acT	1	1	B.1.375	0.00082
ORF1ab/nsp14A2-B	50	T50T	acC	acA	1	1	B.1.380	0.006623
ORF1ab/nsp14A2-B	50	T50I	aCc	aTc	1	1	B.1.399	0.001934
ORF1ab/nsp14A2-B	50	T50T	acC	acT	1	1	B.1.417	0.028571
ORF1ab/nsp14A2-B	50	T50T	acC	acT	1	1	B.1.509	0.000866
ORF1ab/nsp14A2-B	50	T50I	aCc	aTc	1	1	B.1.517	0.000427
ORF1ab/nsp14A2-B	50	T50del	ACC	---	1	1	B.1.561	0.000397
ORF1ab/nsp14A2-B	50	T50R	aCC	aGA	1	1	B.1.565	0.00081
ORF1ab/nsp14A2-B	50	T50S	aCc	aGc	1	1	B.1.565	0.00081
ORF1ab/nsp14A2-B	50	T50T	acC	acA	1	1	B.1.565	0.00081
ORF1ab/nsp14A2-B	50	T50I	aCc	aTc	1	1	B.1.580	0.004065
ORF1ab/nsp14A2-B	50	T50del	ACC	---	1	1	B.1.582	0.000491
ORF1ab/nsp14A2-B	50	T50I	aCc	aTc	1	1	B.1.596	0.000087
ORF1ab/nsp14A2-B	50	T50T	acC	acT	1	1	B.1.609	0.000479
ORF1ab/nsp14A2-B	50	T50N	aCc	aAc	1	1	B.1.617.1	0.000129
ORF1ab/nsp14A2-B	50	T50T	acC	acT	1	1	B.1.617.3	0.002985
ORF1ab/nsp14A2-B	50	T50T	acC	acT	1	1	B.1.636	0.006711
ORF1ab/nsp14A2-B	50	T50T	acC	acT	1	1	C.39	0.018868
ORF1ab/nsp14A2-B	50	T50I	aCc	aTc	1	1	D.2	0.000075
ORF1ab/nsp14A2-B	50	T50N	aCc	aAc	1	1	N.5	0.001767
ORF1ab/nsp14A2-B	50	T50del	ACC	---	1	1	P.1	0.000016
ORF1ab/nsp14A2-B	50	T50T	acC	acT	1	1	P.2	0.000187
ORF1ab/nsp14A2-B	50	T50T	acC	acT	1	1	Q.8	0.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.