CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp14A2-B : CodonNum = 50

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp14A2-B50T50TT5975TsynacCacT274326600.96974118187-18189
ORF1ab/nsp14A2-B50T50TT5975TsynacCacA2743820.029894318187-18189
ORF1ab/nsp14A2-B50T50TT5975TsynacCacG274310.00036456418187-18189
ORF1ab/nsp14A2-B50T50NT5975NnonsynaCcaAc277277118187-18189
ORF1ab/nsp14A2-B50T50IT5975InonsynaCcaTc1301280.98461518187-18189
ORF1ab/nsp14A2-B50T50IT5975InonsynaCCaTA13020.015384618187-18189
ORF1ab/nsp14A2-B50T50AT5975AnonsynAccGcc55520.94545518187-18189
ORF1ab/nsp14A2-B50T50AT5975AnonsynAcCGcA5530.054545518187-18189
ORF1ab/nsp14A2-B50T50delT5975deldelACC---2525118187-18189
ORF1ab/nsp14A2-B50T50ST5975SnonsynAccTcc20150.7518187-18189
ORF1ab/nsp14A2-B50T50ST5975SnonsynaCcaGc2040.218187-18189
ORF1ab/nsp14A2-B50T50ST5975SnonsynAcCTcT2010.0518187-18189
ORF1ab/nsp14A2-B50T50VT5975VnonsynACcGTc420.518187-18189
ORF1ab/nsp14A2-B50T50VT5975VnonsynACCGTA420.518187-18189
ORF1ab/nsp14A2-B50T50PT5975PnonsynAccCcc22118187-18189
ORF1ab/nsp14A2-B50T50GT5975GnonsynACCGGA210.518187-18189
ORF1ab/nsp14A2-B50T50GT5975GnonsynACcGGc210.518187-18189
ORF1ab/nsp14A2-B50T50CT5975CnonsynACcTGc11118187-18189
ORF1ab/nsp14A2-B50T50RT5975RnonsynaCCaGA11118187-18189
ORF1ab/nsp14A2-B50T50del1T5975del1delaCca-c11118187-18189

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp14A2-B50T50TacCacT26602743All0.000509
ORF1ab/nsp14A2-B50T50TacCacA822743All0.000016
ORF1ab/nsp14A2-B50T50TacCacG12743All0
ORF1ab/nsp14A2-B50T50TacCacT511511C.36.30.289847
ORF1ab/nsp14A2-B50T50TacCacT323323C.36.3.10.877717
ORF1ab/nsp14A2-B50T50NaCcaAc277277All0.000053
ORF1ab/nsp14A2-B50T50TacCacT252252B.1.5170.1076
ORF1ab/nsp14A2-B50T50NaCcaAc224224AY.30.002228
ORF1ab/nsp14A2-B50T50TacCacT195207B.1.1.70.000175
ORF1ab/nsp14A2-B50T50TacCacA12207B.1.1.70.000011
ORF1ab/nsp14A2-B50T50IaCcaTc128130All0.000024
ORF1ab/nsp14A2-B50T50IaCCaTA2130All0
ORF1ab/nsp14A2-B50T50TacCacT120123B.1.617.20.000452
ORF1ab/nsp14A2-B50T50TacCacA3123B.1.617.20.000011
ORF1ab/nsp14A2-B50T50TacCacT119119AY.50.002457
ORF1ab/nsp14A2-B50T50TacCacT102112AY.40.000159
ORF1ab/nsp14A2-B50T50TacCacA9112AY.40.000014
ORF1ab/nsp14A2-B50T50TacCacG1112AY.40.000002
ORF1ab/nsp14A2-B50T50TacCacT9191B.1.1.4370.947917
ORF1ab/nsp14A2-B50T50TacCacT8989B.1.1.3020.184647
ORF1ab/nsp14A2-B50T50TacCacT8787P.1.70.027778
ORF1ab/nsp14A2-B50T50TacCacT6366B.10.000577
ORF1ab/nsp14A2-B50T50TacCacA366B.10.000027
ORF1ab/nsp14A2-B50T50AAccGcc5255All0.00001
ORF1ab/nsp14A2-B50T50AAcCGcA355All0.000001
ORF1ab/nsp14A2-B50T50IaCcaTc4444AY.50.000909
ORF1ab/nsp14A2-B50T50TacCacT4043AY.30.000398
ORF1ab/nsp14A2-B50T50TacCacA343AY.30.00003
ORF1ab/nsp14A2-B50T50TacCacT4142AY.440.00025
ORF1ab/nsp14A2-B50T50TacCacA142AY.440.000006
ORF1ab/nsp14A2-B50T50TacCacT3939AY.430.000173
ORF1ab/nsp14A2-B50T50TacCacT2338AY.250.000138
ORF1ab/nsp14A2-B50T50TacCacA1538AY.250.00009
ORF1ab/nsp14A2-B50T50TacCacT3838B.1.4270.001919
ORF1ab/nsp14A2-B50T50TacCacT3636B.1.20.000317
ORF1ab/nsp14A2-B50T50TacCacT3134B.1.1.5190.001231
ORF1ab/nsp14A2-B50T50TacCacA334B.1.1.5190.000119
ORF1ab/nsp14A2-B50T50TacCacT3131B.1.10.000562
ORF1ab/nsp14A2-B50T50TacCacT3031C.360.027322
ORF1ab/nsp14A2-B50T50TacCacA131C.360.000911
ORF1ab/nsp14A2-B50T50TacCacT2828B.1.221.30.023333
ORF1ab/nsp14A2-B50T50delACC---2525All0.000005
ORF1ab/nsp14A2-B50T50AAccGcc2525B.10.000229
ORF1ab/nsp14A2-B50T50TacCacT2323P.1.140.001099
ORF1ab/nsp14A2-B50T50TacCacT1921AY.200.000738
ORF1ab/nsp14A2-B50T50TacCacA221AY.200.000078
ORF1ab/nsp14A2-B50T50SAccTcc1520All0.000003
ORF1ab/nsp14A2-B50T50SaCcaGc420All0.000001
ORF1ab/nsp14A2-B50T50SAcCTcT120All0
ORF1ab/nsp14A2-B50T50TacCacT1919AY.290.0003
ORF1ab/nsp14A2-B50T50TacCacT1419AY.390.000346
ORF1ab/nsp14A2-B50T50TacCacA519AY.390.000124
ORF1ab/nsp14A2-B50T50TacCacT1417AY.1030.000087
ORF1ab/nsp14A2-B50T50TacCacA317AY.1030.000019
ORF1ab/nsp14A2-B50T50TacCacT1717P.10.000268
ORF1ab/nsp14A2-B50T50TacCacT1616B.1.1770.000211
ORF1ab/nsp14A2-B50T50TacCacT1616B.1.5260.000376
ORF1ab/nsp14A2-B50T50TacCacT1515B.1.1.3740.035629
ORF1ab/nsp14A2-B50T50TacCacT1515B.1.1600.000468
ORF1ab/nsp14A2-B50T50TacCacT1515B.1.4290.000353
ORF1ab/nsp14A2-B50T50NaCcaAc1212B.1.1.630.00463
ORF1ab/nsp14A2-B50T50TacCacT1111AY.270.000712
ORF1ab/nsp14A2-B50T50TacCacT1010AY.140.00088
ORF1ab/nsp14A2-B50T50NaCcaAc1010P.10.000158
ORF1ab/nsp14A2-B50T50SAccTcc99B.1.1.2420.391304
ORF1ab/nsp14A2-B50T50TacCacT99B.1.177.200.013657
ORF1ab/nsp14A2-B50T50IaCcaTc99B.1.3690.002567
ORF1ab/nsp14A2-B50T50NaCcaAc88AY.420.000322
ORF1ab/nsp14A2-B50T50IaCcaTc88AY.430.000035
ORF1ab/nsp14A2-B50T50TacCacT88AY.800.009029
ORF1ab/nsp14A2-B50T50TacCacT78AY.99.20.000645
ORF1ab/nsp14A2-B50T50TacCacA18AY.99.20.000092
ORF1ab/nsp14A2-B50T50delACC---88B.1.1.70.000007
ORF1ab/nsp14A2-B50T50TacCacT88B.1.177.860.001468
ORF1ab/nsp14A2-B50T50TacCacT68B.1.5250.000679
ORF1ab/nsp14A2-B50T50TacCacA28B.1.5250.000226
ORF1ab/nsp14A2-B50T50TacCacT77B.1.1.4340.00244
ORF1ab/nsp14A2-B50T50TacCacT66AY.1020.000159
ORF1ab/nsp14A2-B50T50TacCacT66AY.9.20.00022
ORF1ab/nsp14A2-B50T50TacCacT55AY.1160.001434
ORF1ab/nsp14A2-B50T50TacCacT35AY.1190.000106
ORF1ab/nsp14A2-B50T50TacCacA25AY.1190.000071
ORF1ab/nsp14A2-B50T50AAccGcc55AY.30.00005
ORF1ab/nsp14A2-B50T50IaCcaTc55AY.40.000008
ORF1ab/nsp14A2-B50T50TacCacT55AY.4.20.000108
ORF1ab/nsp14A2-B50T50IaCcaTc55B.1.1.70.000004
ORF1ab/nsp14A2-B50T50AAccGcc55B.1.360.00073
ORF1ab/nsp14A2-B50T50NaCcaAc55B.1.617.20.000019
ORF1ab/nsp14A2-B50T50IaCcaTc240.111111
ORF1ab/nsp14A2-B50T50IaCCaTA240.111111
ORF1ab/nsp14A2-B50T50VACCGTA240.111111
ORF1ab/nsp14A2-B50T50VACcGTc240.111111
ORF1ab/nsp14A2-B50T50AAccGcc240.111111
ORF1ab/nsp14A2-B50T50AAcCGcA240.111111
ORF1ab/nsp14A2-B50T50VACCGTA24All0
ORF1ab/nsp14A2-B50T50VACcGTc24All0
ORF1ab/nsp14A2-B50T50TacCacT44AY.10.001583
ORF1ab/nsp14A2-B50T50IaCcaTc44AY.270.000259
ORF1ab/nsp14A2-B50T50TacCacT44AY.4.50.00043
ORF1ab/nsp14A2-B50T50IaCcaTc44AY.440.000024
ORF1ab/nsp14A2-B50T50TacCacA44B.1.36.80.004
ORF1ab/nsp14A2-B50T50TacCacT44B.1.6370.000292
ORF1ab/nsp14A2-B50T50TacCacT33A.2.50.001497
ORF1ab/nsp14A2-B50T50IaCcaTc33AY.290.000047
ORF1ab/nsp14A2-B50T50TacCacT33AY.60.000123
ORF1ab/nsp14A2-B50T50TacCacT33AY.790.003632
ORF1ab/nsp14A2-B50T50IaCcaTc33B.10.000027
ORF1ab/nsp14A2-B50T50IaCcaTc33B.1.10.000054
ORF1ab/nsp14A2-B50T50NaCcaAc33B.1.10.000054
ORF1ab/nsp14A2-B50T50TacCacT33B.1.1.3180.000905
ORF1ab/nsp14A2-B50T50IaCcaTc33B.1.1.5190.000119
ORF1ab/nsp14A2-B50T50IaCcaTc33B.1.4290.000071
ORF1ab/nsp14A2-B50T50IaCcaTc33B.1.617.20.000011
ORF1ab/nsp14A2-B50T50TacCacT33D.20.000225
ORF1ab/nsp14A2-B50T50TacCacA220.111111
ORF1ab/nsp14A2-B50T50SAccTcc120.055556
ORF1ab/nsp14A2-B50T50SaCcaGc120.055556
ORF1ab/nsp14A2-B50T50AAccGcc22A.2.50.000998
ORF1ab/nsp14A2-B50T50PAccCcc22All0
ORF1ab/nsp14A2-B50T50GACCGGA12All0
ORF1ab/nsp14A2-B50T50GACcGGc12All0
ORF1ab/nsp14A2-B50T50TacCacT22AY.1000.000092
ORF1ab/nsp14A2-B50T50IaCcaTc22AY.1020.000053
ORF1ab/nsp14A2-B50T50TacCacT22AY.1210.000271
ORF1ab/nsp14A2-B50T50delACC---22AY.250.000012
ORF1ab/nsp14A2-B50T50TacCacT22AY.29.10.000441
ORF1ab/nsp14A2-B50T50IaCcaTc22AY.390.000049
ORF1ab/nsp14A2-B50T50TacCacA22AY.39.10.000079
ORF1ab/nsp14A2-B50T50AAccGcc22AY.40.000003
ORF1ab/nsp14A2-B50T50IaCcaTc22AY.4.20.000043
ORF1ab/nsp14A2-B50T50delACC---22AY.4.50.000215
ORF1ab/nsp14A2-B50T50NaCcaAc22AY.440.000012
ORF1ab/nsp14A2-B50T50NaCcaAc22AY.450.000243
ORF1ab/nsp14A2-B50T50TacCacT22AY.98.10.000097
ORF1ab/nsp14A2-B50T50delACC---22B.1.10.000036
ORF1ab/nsp14A2-B50T50TacCacT22B.1.1.2940.002532
ORF1ab/nsp14A2-B50T50AAccGcc22B.1.1.4440.285714
ORF1ab/nsp14A2-B50T50TacCacT22B.1.177.830.002963
ORF1ab/nsp14A2-B50T50TacCacA12B.1.2210.000071
ORF1ab/nsp14A2-B50T50TacCacT12B.1.2210.000071
ORF1ab/nsp14A2-B50T50TacCacT22B.1.2340.000264
ORF1ab/nsp14A2-B50T50TacCacT22B.1.3110.000549
ORF1ab/nsp14A2-B50T50TacCacT22B.1.3510.000059
ORF1ab/nsp14A2-B50T50TacCacT22B.1.351.50.001199
ORF1ab/nsp14A2-B50T50GACCGGA12B.1.5650.00081
ORF1ab/nsp14A2-B50T50AAccGcc12B.1.5650.00081
ORF1ab/nsp14A2-B50T50AAcCGcA12B.1.5650.00081
ORF1ab/nsp14A2-B50T50GACcGGc12B.1.5650.00081
ORF1ab/nsp14A2-B50T50TacCacT22B.1.5960.000174
ORF1ab/nsp14A2-B50T50TacCacT22B.1.617.10.000258
ORF1ab/nsp14A2-B50T50AAccGcc22B.1.617.20.000008
ORF1ab/nsp14A2-B50T50SAccTcc12B.1.617.20.000004
ORF1ab/nsp14A2-B50T50SaCcaGc12B.1.617.20.000004
ORF1ab/nsp14A2-B50T50TacCacT22C.370.000232
ORF1ab/nsp14A2-B50T50CACcTGc110.055556
ORF1ab/nsp14A2-B50T50NaCcaAc11A.2.40.003367
ORF1ab/nsp14A2-B50T50TacCacT11A.210.00277
ORF1ab/nsp14A2-B50T50TacCacT11AD.20.000219
ORF1ab/nsp14A2-B50T50del1aCca-c11All0
ORF1ab/nsp14A2-B50T50CACcTGc11All0
ORF1ab/nsp14A2-B50T50RaCCaGA11All0
ORF1ab/nsp14A2-B50T50TacCacA11AY.100.00053
ORF1ab/nsp14A2-B50T50SAccTcc11AY.1000.000046
ORF1ab/nsp14A2-B50T50SaCcaGc11AY.1020.000027
ORF1ab/nsp14A2-B50T50PAccCcc11AY.1030.000006
ORF1ab/nsp14A2-B50T50AAccGcc11AY.1080.001103
ORF1ab/nsp14A2-B50T50IaCcaTc11AY.1080.001103
ORF1ab/nsp14A2-B50T50TacCacT11AY.1110.000183
ORF1ab/nsp14A2-B50T50IaCcaTc11AY.1140.000231
ORF1ab/nsp14A2-B50T50IaCcaTc11AY.1170.000085
ORF1ab/nsp14A2-B50T50TacCacT11AY.1170.000085
ORF1ab/nsp14A2-B50T50TacCacT11AY.1180.000063
ORF1ab/nsp14A2-B50T50NaCcaAc11AY.1190.000035
ORF1ab/nsp14A2-B50T50TacCacT11AY.1200.000037
ORF1ab/nsp14A2-B50T50TacCacT11AY.130.000161
ORF1ab/nsp14A2-B50T50AAccGcc11AY.200.000039
ORF1ab/nsp14A2-B50T50NaCcaAc11AY.200.000039
ORF1ab/nsp14A2-B50T50TacCacT11AY.230.00007
ORF1ab/nsp14A2-B50T50TacCacT11AY.240.000431
ORF1ab/nsp14A2-B50T50IaCcaTc11AY.250.000006
ORF1ab/nsp14A2-B50T50NaCcaAc11AY.250.000006
ORF1ab/nsp14A2-B50T50TacCacT11AY.260.000028
ORF1ab/nsp14A2-B50T50IaCcaTc11AY.30.00001
ORF1ab/nsp14A2-B50T50TacCacT11AY.330.000067
ORF1ab/nsp14A2-B50T50TacCacT11AY.340.000097
ORF1ab/nsp14A2-B50T50AAccGcc11AY.340.000097
ORF1ab/nsp14A2-B50T50delACC---11AY.360.000148
ORF1ab/nsp14A2-B50T50NaCcaAc11AY.40.000002
ORF1ab/nsp14A2-B50T50SAccTcc11AY.40.000002
ORF1ab/nsp14A2-B50T50delACC---11AY.40.000002
ORF1ab/nsp14A2-B50T50TacCacA11AY.4.2.10.000149
ORF1ab/nsp14A2-B50T50TacCacT11AY.4.40.000409
ORF1ab/nsp14A2-B50T50delACC---11AY.430.000004
ORF1ab/nsp14A2-B50T50SAcCTcT11AY.430.000004
ORF1ab/nsp14A2-B50T50AAccGcc11AY.430.000004
ORF1ab/nsp14A2-B50T50TacCacA11AY.5.30.000337
ORF1ab/nsp14A2-B50T50TacCacT11AY.530.000288
ORF1ab/nsp14A2-B50T50TacCacT11AY.540.000095
ORF1ab/nsp14A2-B50T50IaCcaTc11AY.580.000907
ORF1ab/nsp14A2-B50T50TacCacT11AY.590.00053
ORF1ab/nsp14A2-B50T50IaCcaTc11AY.60.000041
ORF1ab/nsp14A2-B50T50TacCacT11AY.640.000595
ORF1ab/nsp14A2-B50T50TacCacA11AY.750.000056
ORF1ab/nsp14A2-B50T50delACC---11AY.750.000056
ORF1ab/nsp14A2-B50T50TacCacT11AY.90.000068
ORF1ab/nsp14A2-B50T50IaCcaTc11AY.940.000443
ORF1ab/nsp14A2-B50T50TacCacT11B0.000128
ORF1ab/nsp14A2-B50T50NaCcaAc11B.10.000009
ORF1ab/nsp14A2-B50T50del1aCca-c11B.10.000009
ORF1ab/nsp14A2-B50T50delACC---11B.10.000009
ORF1ab/nsp14A2-B50T50AAccGcc11B.1.10.000018
ORF1ab/nsp14A2-B50T50TacCacT11B.1.1.10.000327
ORF1ab/nsp14A2-B50T50IaCcaTc11B.1.1.1530.001095
ORF1ab/nsp14A2-B50T50TacCacT11B.1.1.1590.004673
ORF1ab/nsp14A2-B50T50TacCacA11B.1.1.1760.000439
ORF1ab/nsp14A2-B50T50IaCcaTc11B.1.1.1890.001513
ORF1ab/nsp14A2-B50T50TacCacT11B.1.1.2140.000055
ORF1ab/nsp14A2-B50T50IaCcaTc11B.1.1.2190.005
ORF1ab/nsp14A2-B50T50TacCacT11B.1.1.3060.000438
ORF1ab/nsp14A2-B50T50IaCcaTc11B.1.1.3290.003846
ORF1ab/nsp14A2-B50T50TacCacT11B.1.1.330.000421
ORF1ab/nsp14A2-B50T50NaCcaAc11B.1.1.4090.002833
ORF1ab/nsp14A2-B50T50TacCacT11B.1.1.4420.018519
ORF1ab/nsp14A2-B50T50NaCcaAc11B.1.1.70.000001
ORF1ab/nsp14A2-B50T50TacCacT11B.1.1100.004525
ORF1ab/nsp14A2-B50T50IaCcaTc11B.1.110.30.000718
ORF1ab/nsp14A2-B50T50TacCacT11B.1.1310.008772
ORF1ab/nsp14A2-B50T50SAccTcc11B.1.1460.004237
ORF1ab/nsp14A2-B50T50IaCcaTc11B.1.160.220.006757
ORF1ab/nsp14A2-B50T50delACC---11B.1.1770.000013
ORF1ab/nsp14A2-B50T50TacCacT11B.1.177.40.000211
ORF1ab/nsp14A2-B50T50TacCacT11B.1.177.440.000519
ORF1ab/nsp14A2-B50T50delACC---11B.1.177.680.015152
ORF1ab/nsp14A2-B50T50IaCcaTc11B.1.177.770.000726
ORF1ab/nsp14A2-B50T50AAccGcc11B.1.177.870.000728
ORF1ab/nsp14A2-B50T50NaCcaAc11B.1.2210.000071
ORF1ab/nsp14A2-B50T50IaCcaTc11B.1.2210.000071
ORF1ab/nsp14A2-B50T50PAccCcc11B.1.2400.000216
ORF1ab/nsp14A2-B50T50delACC---11B.1.2580.000067
ORF1ab/nsp14A2-B50T50TacCacT11B.1.2580.000067
ORF1ab/nsp14A2-B50T50TacCacA11B.1.258.170.000104
ORF1ab/nsp14A2-B50T50IaCcaTc11B.1.2980.002114
ORF1ab/nsp14A2-B50T50TacCacT11B.1.3240.001605
ORF1ab/nsp14A2-B50T50TacCacT11B.1.3360.002439
ORF1ab/nsp14A2-B50T50IaCcaTc11B.1.3480.018182
ORF1ab/nsp14A2-B50T50TacCacT11B.1.360.000146
ORF1ab/nsp14A2-B50T50TacCacT11B.1.36.180.00042
ORF1ab/nsp14A2-B50T50SAccTcc11B.1.3620.001541
ORF1ab/nsp14A2-B50T50TacCacT11B.1.3750.00082
ORF1ab/nsp14A2-B50T50TacCacA11B.1.3800.006623
ORF1ab/nsp14A2-B50T50IaCcaTc11B.1.3990.001934
ORF1ab/nsp14A2-B50T50TacCacT11B.1.4170.028571
ORF1ab/nsp14A2-B50T50TacCacT11B.1.5090.000866
ORF1ab/nsp14A2-B50T50IaCcaTc11B.1.5170.000427
ORF1ab/nsp14A2-B50T50delACC---11B.1.5610.000397
ORF1ab/nsp14A2-B50T50RaCCaGA11B.1.5650.00081
ORF1ab/nsp14A2-B50T50SaCcaGc11B.1.5650.00081
ORF1ab/nsp14A2-B50T50TacCacA11B.1.5650.00081
ORF1ab/nsp14A2-B50T50IaCcaTc11B.1.5800.004065
ORF1ab/nsp14A2-B50T50delACC---11B.1.5820.000491
ORF1ab/nsp14A2-B50T50IaCcaTc11B.1.5960.000087
ORF1ab/nsp14A2-B50T50TacCacT11B.1.6090.000479
ORF1ab/nsp14A2-B50T50NaCcaAc11B.1.617.10.000129
ORF1ab/nsp14A2-B50T50TacCacT11B.1.617.30.002985
ORF1ab/nsp14A2-B50T50TacCacT11B.1.6360.006711
ORF1ab/nsp14A2-B50T50TacCacT11C.390.018868
ORF1ab/nsp14A2-B50T50IaCcaTc11D.20.000075
ORF1ab/nsp14A2-B50T50NaCcaAc11N.50.001767
ORF1ab/nsp14A2-B50T50delACC---11P.10.000016
ORF1ab/nsp14A2-B50T50TacCacT11P.20.000187
ORF1ab/nsp14A2-B50T50TacCacT11Q.80.000165