CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp14A2-B : CodonNum = 495

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF1ab/nsp14A2-B	495	L495L	L6420L	syn	ctC	ctT	87477	87170	0.99649	19522-19524
ORF1ab/nsp14A2-B	495	L495L	L6420L	syn	ctC	ctA	87477	268	0.00306366	19522-19524
ORF1ab/nsp14A2-B	495	L495L	L6420L	syn	ctC	ctG	87477	39	0.000445831	19522-19524
ORF1ab/nsp14A2-B	495	L495del	L6420del	del	CTC	---	737	737	1	19522-19524
ORF1ab/nsp14A2-B	495	L495I	L6420I	nonsyn	Ctc	Atc	76	71	0.934211	19522-19524
ORF1ab/nsp14A2-B	495	L495I	L6420I	nonsyn	CtC	AtT	76	5	0.0657895	19522-19524
ORF1ab/nsp14A2-B	495	L495F	L6420F	nonsyn	Ctc	Ttc	27	23	0.851852	19522-19524
ORF1ab/nsp14A2-B	495	L495F	L6420F	nonsyn	CtC	TtT	27	4	0.148148	19522-19524
ORF1ab/nsp14A2-B	495	L495P	L6420P	nonsyn	cTc	cCc	20	13	0.65	19522-19524
ORF1ab/nsp14A2-B	495	L495P	L6420P	nonsyn	cTC	cCT	20	6	0.3	19522-19524
ORF1ab/nsp14A2-B	495	L495P	L6420P	nonsyn	cTC	cCG	20	1	0.05	19522-19524
ORF1ab/nsp14A2-B	495	L495H	L6420H	nonsyn	cTc	cAc	16	16	1	19522-19524
ORF1ab/nsp14A2-B	495	L495V	L6420V	nonsyn	Ctc	Gtc	13	11	0.846154	19522-19524
ORF1ab/nsp14A2-B	495	L495V	L6420V	nonsyn	CtC	GtT	13	1	0.0769231	19522-19524
ORF1ab/nsp14A2-B	495	L495V	L6420V	nonsyn	CtC	GtG	13	1	0.0769231	19522-19524
ORF1ab/nsp14A2-B	495	L495R	L6420R	nonsyn	cTc	cGc	10	5	0.5	19522-19524
ORF1ab/nsp14A2-B	495	L495R	L6420R	nonsyn	CTC	AGA	10	3	0.3	19522-19524
ORF1ab/nsp14A2-B	495	L495R	L6420R	nonsyn	cTC	cGA	10	1	0.1	19522-19524
ORF1ab/nsp14A2-B	495	L495R	L6420R	nonsyn	cTC	cGT	10	1	0.1	19522-19524
ORF1ab/nsp14A2-B	495	L495del1	L6420del1	del	ctC	ct-	8	4	0.5	19522-19524
ORF1ab/nsp14A2-B	495	L495del1	L6420del1	del	CTC	-NN	8	2	0.25	19522-19524
ORF1ab/nsp14A2-B	495	L495del1	L6420del1	del	CTC	-CT	8	1	0.125	19522-19524
ORF1ab/nsp14A2-B	495	L495del1	L6420del1	del	CtC	Nt-	8	1	0.125	19522-19524
ORF1ab/nsp14A2-B	495	L495del2	L6420del2	del	cTC	c--	5	3	0.6	19522-19524
ORF1ab/nsp14A2-B	495	L495del2	L6420del2	del	CTc	--c	5	2	0.4	19522-19524
ORF1ab/nsp14A2-B	495	L495S	L6420S	nonsyn	CTC	TCT	3	2	0.666667	19522-19524
ORF1ab/nsp14A2-B	495	L495S	L6420S	nonsyn	CTc	AGc	3	1	0.333333	19522-19524
ORF1ab/nsp14A2-B	495	L495A	L6420A	nonsyn	CTC	GCT	2	1	0.5	19522-19524
ORF1ab/nsp14A2-B	495	L495A	L6420A	nonsyn	CTc	GCc	2	1	0.5	19522-19524
ORF1ab/nsp14A2-B	495	L495Q	L6420Q	nonsyn	cTC	cAA	1	1	1	19522-19524
ORF1ab/nsp14A2-B	495	L495K	L6420K	nonsyn	CTC	AAA	1	1	1	19522-19524
ORF1ab/nsp14A2-B	495	L495X	L6420X	nonsyn	CTC	TAG	1	1	1	19522-19524
ORF1ab/nsp14A2-B	495	L495Y	L6420Y	nonsyn	CTc	TAc	1	1	1	19522-19524

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	87170	87477	All	0.016672
ORF1ab/nsp14A2-B	495	L495L	ctC	ctA	268	87477	All	0.000051
ORF1ab/nsp14A2-B	495	L495L	ctC	ctG	39	87477	All	0.000007
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	21177	21302	B.1.1.7	0.018958
ORF1ab/nsp14A2-B	495	L495L	ctC	ctA	93	21302	B.1.1.7	0.000083
ORF1ab/nsp14A2-B	495	L495L	ctC	ctG	32	21302	B.1.1.7	0.000029
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	16729	16730	B.1.617.2	0.062992
ORF1ab/nsp14A2-B	495	L495L	ctC	ctA	1	16730	B.1.617.2	0.000004
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	14632	14632	AY.98.1	0.70864
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	8723	8730	AY.4	0.013577
ORF1ab/nsp14A2-B	495	L495L	ctC	ctA	7	8730	AY.4	0.000011
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	8217	8217	AY.98	0.649103
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	2650	2650	AY.68	0.725431
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	2011	2013	B.1.351	0.05978
ORF1ab/nsp14A2-B	495	L495L	ctC	ctA	2	2013	B.1.351	0.000059
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	1874	1874	B.1.221	0.133115
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	977	977	B.6.6	0.868444
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	942	942	B.1.565	0.763371
ORF1ab/nsp14A2-B	495	L495del	CTC	---	737	737	All	0.000141
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	709	709	B.1.177.8	0.533484
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	515	516	B.1.2	0.004535
ORF1ab/nsp14A2-B	495	L495L	ctC	ctA	1	516	B.1.2	0.000009
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	508	509	AY.43	0.002251
ORF1ab/nsp14A2-B	495	L495L	ctC	ctA	1	509	AY.43	0.000004
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	374	378	B.1.1	0.006785
ORF1ab/nsp14A2-B	495	L495L	ctC	ctA	4	378	B.1.1	0.000073
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	288	290	AY.25	0.001732
ORF1ab/nsp14A2-B	495	L495L	ctC	ctA	2	290	AY.25	0.000012
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	263	266	AY.44	0.001601
ORF1ab/nsp14A2-B	495	L495L	ctC	ctA	3	266	AY.44	0.000018
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	258	260	P.1	0.004065
ORF1ab/nsp14A2-B	495	L495L	ctC	ctG	2	260	P.1	0.000032
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	246	252	B.1	0.002253
ORF1ab/nsp14A2-B	495	L495L	ctC	ctG	3	252	B.1	0.000027
ORF1ab/nsp14A2-B	495	L495L	ctC	ctA	3	252	B.1	0.000027
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	246	246	AY.26	0.006964
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	241	241	C.36.1	1
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	208	208	Q.8	0.034301
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	194	194	AY.4.5	0.020853
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	171	184	AY.103	0.001062
ORF1ab/nsp14A2-B	495	L495L	ctC	ctA	13	184	AY.103	0.000081
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	168	168	AY.65	0.089552
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	168	168	B.1.258.11	0.066587
ORF1ab/nsp14A2-B	495	L495del	CTC	---	157	157	AY.43	0.000696
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	149	150	B.1.429	0.003506
ORF1ab/nsp14A2-B	495	L495L	ctC	ctA	1	150	B.1.429	0.000024
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	130	144	B.1.177	0.001712
ORF1ab/nsp14A2-B	495	L495L	ctC	ctA	14	144	B.1.177	0.000184
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	129	129	B.1.1.369	0.057564
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	122	122	B.1.632	0.818792
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	105	105	B.6	0.095541
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	104	104	AY.36	0.015414
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	99	103	AY.102	0.002625
ORF1ab/nsp14A2-B	495	L495L	ctC	ctA	4	103	AY.102	0.000106
ORF1ab/nsp14A2-B	495	L495L	ctC	ctA	92	96	AY.74	0.01064
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	4	96	AY.74	0.000463
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	90	90	B.1.160	0.002807
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	81	81	B.1.243	0.005636
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	78	78	B.1.596	0.006797
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	77	77	B.1.526	0.00181
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	77	77	B.1.637	0.005627
ORF1ab/nsp14A2-B	495	L495I	Ctc	Atc	71	76	All	0.000014
ORF1ab/nsp14A2-B	495	L495I	CtC	AtT	5	76	All	0.000001
ORF1ab/nsp14A2-B	495	L495del	CTC	---	76	76	B.1.2	0.000669
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	76	76	Q.1	0.009601
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	75	75	N.9	0.446429
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	74	74	AY.120	0.002751
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	73	73	AY.3	0.000726
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	72	72	B.1.551	0.092903
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	72	72	B.1.617.1	0.009286
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	71	71	B.1.110.3	0.051006
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	67	68	AY.6	0.002756
ORF1ab/nsp14A2-B	495	L495L	ctC	ctA	1	68	AY.6	0.000041
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	67	67	R.1	0.006031
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	66	66	B.1.177.7	0.01088
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	63	63	AY.37	0.019912
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	63	63	AY.4.2.1	0.009386
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	57	57	AY.46.4	0.009377
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	56	56	B.1.36.8	0.056
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	46	46	AY.108	0.050717
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	46	46	B.1.466.2	0.017997
ORF1ab/nsp14A2-B	495	L495del	CTC	---	46	46	B.1.617.2	0.000173
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	45	45	AY.5.3	0.015182
ORF1ab/nsp14A2-B	495	L495del	CTC	---	44	44	B.1.1.7	0.000039
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	43	43	AY.27	0.002783
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	41	41	AY.29	0.000647
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	40	40	B.1.351.5	0.023981
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	39	39	AY.5	0.000805
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	38	39	C.37	0.00441
ORF1ab/nsp14A2-B	495	L495L	ctC	ctA	1	39	C.37	0.000116
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	37	37	AY.14	0.003256
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	34	34	AY.39.1	0.001347
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	34	34	B.1.258	0.002263
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	33	33	AY.4.2	0.000716
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	33	33	B.1.1.25	0.018761
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	32	32	AY.46	0.003331
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	31	31	AY.20	0.001205
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	31	31	AY.23	0.002162
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	31	31	AY.39	0.000766
ORF1ab/nsp14A2-B	495	L495del	CTC	---	31	31	B.1	0.000284
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	29	30	AY.42	0.001167
ORF1ab/nsp14A2-B	495	L495L	ctC	ctG	1	30	AY.42	0.00004
ORF1ab/nsp14A2-B	495	L495I	Ctc	Atc	29	30	B.1.1.7	0.000026
ORF1ab/nsp14A2-B	495	L495I	CtC	AtT	1	30	B.1.1.7	0.000001
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	29	29	B.1.1.1	0.009474
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	29	29	B.1.621	0.002567
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	29	29	C.36.3	0.016449
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	28	28	AY.116	0.00803
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	28	28	B.1.369	0.007986
ORF1ab/nsp14A2-B	495	L495F	Ctc	Ttc	23	27	All	0.000004
ORF1ab/nsp14A2-B	495	L495F	CtC	TtT	4	27	All	0.000001
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	27	27	B.1.258.17	0.002807
ORF1ab/nsp14A2-B	495	L495del	CTC	---	26	26	AY.25	0.000156
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	26	26	AY.60	0.02439
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	26	26	B.1.525	0.002942
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	25	25	AY.9	0.00169
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	25	25	S.1	0.123762
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	23	24	AY.100	0.001058
ORF1ab/nsp14A2-B	495	L495L	ctC	ctG	1	24	AY.100	0.000046
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	24	24	AY.106	0.008038
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	24	24	AY.47	0.000747
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	24	24	B.1.399	0.046422
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	23	24	P.1.10	0.006198
ORF1ab/nsp14A2-B	495	L495L	ctC	ctA	1	24	P.1.10	0.000269
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	24	24	P.1.14	0.001147
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	23	23	AY.117	0.001944
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	23	23	B.1.1.519	0.000913
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	22	22	B.6.4	1
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	21	21	B.1.1.222	0.004284
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	21	21	B.1.427	0.00106
ORF1ab/nsp14A2-B	495	L495P	cTc	cCc	13	20	All	0.000002
ORF1ab/nsp14A2-B	495	L495P	cTC	cCT	6	20	All	0.000001
ORF1ab/nsp14A2-B	495	L495P	cTC	cCG	1	20	All	0
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	18	19	AY.3.1	0.001535
ORF1ab/nsp14A2-B	495	L495L	ctC	ctA	1	19	AY.3.1	0.000085
ORF1ab/nsp14A2-B	495	L495del	CTC	---	19	19	AY.34.1	0.009689
ORF1ab/nsp14A2-B	495	L495del	CTC	---	19	19	AY.44	0.000116
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	19	19	B.1.1.70	0.00648
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	19	19	B.1.201	0.107955
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	19	19	B.1.234	0.002507
ORF1ab/nsp14A2-B	495	L495L	ctC	ctA	17	19	B.1.36.36	0.010235
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	2	19	B.1.36.36	0.001204
ORF1ab/nsp14A2-B	495	L495del	CTC	---	18	18	B.1.1	0.000327
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	17	18	B.1.36	0.00248
ORF1ab/nsp14A2-B	495	L495L	ctC	ctA	1	18	B.1.36	0.000146
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	17	17	B.1.408	0.062731
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	17	17	B.1.409	0.013281
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	17	17	B.1.564	0.00724
ORF1ab/nsp14A2-B	495	L495H	cTc	cAc	16	16	All	0.000003
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	16	16	AY.5.4	0.004427
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	16	16	B.1.575	0.004854
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	16	16	P.2	0.002986
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	15	15	AY.119	0.00053
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	15	15	AY.99.2	0.001382
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	15	15	B.1.1.189	0.022693
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	15	15	B.1.1.28	0.004669
ORF1ab/nsp14A2-B	495	L495del	CTC	---	15	15	B.1.351	0.000446
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	15	15	B.1.367	0.011886
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	14	14	AY.114	0.003235
ORF1ab/nsp14A2-B	495	L495del	CTC	---	14	14	AY.3	0.000139
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	14	14	AY.45	0.001704
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	14	14	AY.9.2	0.000514
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	14	14	B.1.111	0.016451
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	14	14	B.1.469	0.050542
ORF1ab/nsp14A2-B	495	L495V	Ctc	Gtc	11	13	All	0.000002
ORF1ab/nsp14A2-B	495	L495V	CtC	GtT	1	13	All	0
ORF1ab/nsp14A2-B	495	L495V	CtC	GtG	1	13	All	0
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	11	13	AY.113	0.001566
ORF1ab/nsp14A2-B	495	L495L	ctC	ctA	2	13	AY.113	0.000285
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	13	13	B.1.177.43	0.019202
ORF1ab/nsp14A2-B	495	L495del	CTC	---	13	13	B.1.526	0.000306
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	12	12	AY.111	0.002198
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	12	12	B.1.1.204	0.036474
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	12	12	B.1.1.269	0.016238
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	12	12	B.1.1.63	0.00463
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	11	11	AY.116.1	0.003426
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	11	11	AY.121	0.001488
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	11	11	AY.29.1	0.002426
ORF1ab/nsp14A2-B	495	L495del	CTC	---	11	11	AY.39	0.000272
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	11	11	AY.75	0.000616
ORF1ab/nsp14A2-B	495	L495del	CTC	---	11	11	AY.9.2	0.000404
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	11	11	B.1.1.147	1
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	11	11	B.1.1.304	0.030899
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	11	11	B.1.1.406	0.071429
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	11	11	B.1.627	0.022222
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	11	11	P.1.15	0.002556
ORF1ab/nsp14A2-B	495	L495R	cTc	cGc	5	10	All	0.000001
ORF1ab/nsp14A2-B	495	L495R	CTC	AGA	3	10	All	0.000001
ORF1ab/nsp14A2-B	495	L495R	cTC	cGA	1	10	All	0
ORF1ab/nsp14A2-B	495	L495R	cTC	cGT	1	10	All	0
ORF1ab/nsp14A2-B	495	L495del	CTC	---	10	10	AY.103	0.000062
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	9	10	B.1.1.198	0.013216
ORF1ab/nsp14A2-B	495	L495L	ctC	ctA	1	10	B.1.1.198	0.001468
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	10	10	B.1.214.2	0.005995
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	10	10	B.1.561	0.00397
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	10	10	B.1.582	0.004907
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	9	9	AY.33	0.000601
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	9	9	AY.34	0.000873
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	9	9	AY.35	0.002097
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	9	9	AY.61	0.000943
ORF1ab/nsp14A2-B	495	L495del	CTC	---	9	9	AY.75	0.000504
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	9	9	B.1.1.214	0.000499
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	9	9	B.1.146	0.038136
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	9	9	B.1.177.56	0.006008
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	9	9	B.1.177.79	0.021077
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	9	9	B.1.575.1	0.021951
ORF1ab/nsp14A2-B	495	L495del1	ctC	ct-	4	8	All	0.000001
ORF1ab/nsp14A2-B	495	L495del1	CTC	-NN	2	8	All	0
ORF1ab/nsp14A2-B	495	L495del1	CtC	Nt-	1	8	All	0
ORF1ab/nsp14A2-B	495	L495del1	CTC	-CT	1	8	All	0
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	8	8	AY.46.5	0.001587
ORF1ab/nsp14A2-B	495	L495del	CTC	---	8	8	AY.52	0.006515
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	8	8	AY.54	0.000763
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	8	8	AY.84	0.0035
ORF1ab/nsp14A2-B	495	L495del	CTC	---	8	8	AY.98.1	0.000387
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	8	8	B	0.001022
ORF1ab/nsp14A2-B	495	L495del	CTC	---	8	8	B.1.596	0.000697
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	8	8	P.1.12	0.003872
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	7	7	A.1	0.001973
ORF1ab/nsp14A2-B	495	L495del	CTC	---	7	7	AY.102	0.000186
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	7	7	AY.118	0.000439
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	7	7	AY.16	0.002658
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	7	7	AY.32	0.003727
ORF1ab/nsp14A2-B	495	L495del	CTC	---	7	7	AY.4	0.000011
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	7	7	B.1.1.216	0.006233
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	7	7	B.1.1.277	0.005311
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	7	7	B.1.1.39	0.003568
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	7	7	B.1.177.4	0.001477
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	7	7	B.1.497	0.002203
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	7	7	B.1.588	0.006369
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	7	7	Y.1	0.089744
ORF1ab/nsp14A2-B	495	L495H	cTc	cAc	6	6	AY.102	0.000159
ORF1ab/nsp14A2-B	495	L495del	CTC	---	6	6	AY.118	0.000376
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	6	6	AY.120.1	0.001926
ORF1ab/nsp14A2-B	495	L495del	CTC	---	6	6	AY.42	0.000241
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	6	6	AY.46.6	0.000433
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	6	6	AY.75.1	0.001082
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	6	6	AY.95	0.004566
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	6	6	B.1.177.72	0.020339
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	6	6	B.1.378	0.041096
ORF1ab/nsp14A2-B	495	L495del	CTC	---	6	6	B.1.429	0.000141
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	6	6	B.1.438.1	0.000644
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	6	6	B.1.609	0.002876
ORF1ab/nsp14A2-B	495	L495I	Ctc	Atc	6	6	B.1.617.2	0.000023
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	6	6	C.16	0.006363
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	6	6	Q.3	0.00087
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	5	5	AD.2	0.001095
ORF1ab/nsp14A2-B	495	L495del2	cTC	c--	3	5	All	0.000001
ORF1ab/nsp14A2-B	495	L495del2	CTc	--c	2	5	All	0
ORF1ab/nsp14A2-B	495	L495del	CTC	---	5	5	AY.110	0.000563
ORF1ab/nsp14A2-B	495	L495del	CTC	---	5	5	AY.119	0.000177
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	5	5	AY.13	0.000805
ORF1ab/nsp14A2-B	495	L495del	CTC	---	5	5	AY.23	0.000349
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	5	5	AY.46.2	0.003177
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	5	5	AY.53	0.001438
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	5	5	AY.59	0.002648
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	5	5	AY.70	0.001043
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	5	5	AY.73	0.003327
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	5	5	AY.9.1	0.000419
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	5	5	B.1.1.434	0.001743
ORF1ab/nsp14A2-B	495	L495V	Ctc	Gtc	5	5	B.1.1.7	0.000004
ORF1ab/nsp14A2-B	495	L495del	CTC	---	5	5	B.1.177	0.000066
ORF1ab/nsp14A2-B	495	L495del	CTC	---	5	5	B.1.243	0.000348
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	5	5	B.1.36.29	0.002587
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	5	5	B.1.404	0.00651
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	5	5	B.1.517	0.002135
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	5	5	B.1.595	0.001305
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	5	5	Q.4	0.002274
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	4	4	A.2.5	0.001996
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	4	4	A.23.1	0.002817
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	4	4	AY.105	0.002572
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	4	4	AY.109	0.002959
ORF1ab/nsp14A2-B	495	L495del	CTC	---	4	4	AY.11	0.005355
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	4	4	AY.16.1	0.00188
ORF1ab/nsp14A2-B	495	L495del	CTC	---	4	4	AY.3.1	0.000341
ORF1ab/nsp14A2-B	495	L495I	Ctc	Atc	4	4	AY.4	0.000006
ORF1ab/nsp14A2-B	495	L495del	CTC	---	4	4	AY.65	0.002132
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	4	4	AY.69	0.000747
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	4	4	AY.78	0.006163
ORF1ab/nsp14A2-B	495	L495F	Ctc	Ttc	3	4	B.1	0.000027
ORF1ab/nsp14A2-B	495	L495F	CtC	TtT	1	4	B.1	0.000009
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	4	4	B.1.1.263	0.006231
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	4	4	B.1.1.306	0.001754
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	4	4	B.1.1.33	0.001684
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	4	4	B.1.1.50	0.002716
ORF1ab/nsp14A2-B	495	L495P	cTc	cCc	3	4	B.1.1.7	0.000003
ORF1ab/nsp14A2-B	495	L495P	cTC	cCT	1	4	B.1.1.7	0.000001
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	4	4	B.1.177.62	0.004768
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	4	4	B.1.177.81	0.000757
ORF1ab/nsp14A2-B	495	L495V	Ctc	Gtc	4	4	B.1.2	0.000035
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	4	4	B.1.315	0.024242
ORF1ab/nsp14A2-B	495	L495del	CTC	---	4	4	B.1.36	0.000584
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	4	4	B.1.476	0.4
ORF1ab/nsp14A2-B	495	L495del	CTC	---	4	4	B.1.617.1	0.000516
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	4	4	B.1.623	0.002146
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	4	4	C.34	0.148148
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	4	4	C.35	0.003096
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	4	4	D.2	0.0003
ORF1ab/nsp14A2-B	495	L495I	Ctc	Atc	4	4	P.1	0.000063
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	4	4	P.1.2	0.004624
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	4	4	P.1.7	0.001277
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	3	3	A	0.001161
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	3	3	A.27	0.004967
ORF1ab/nsp14A2-B	495	L495S	CTC	TCT	2	3	All	0
ORF1ab/nsp14A2-B	495	L495S	CTc	AGc	1	3	All	0
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	3	3	AY.19	0.003421
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	3	3	AY.30	0.001187
ORF1ab/nsp14A2-B	495	L495del	CTC	---	3	3	AY.33	0.0002
ORF1ab/nsp14A2-B	495	L495I	Ctc	Atc	3	3	AY.43	0.000013
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	3	3	AY.48	0.001395
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	3	3	AY.56	0.004815
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	3	3	AY.62	0.001307
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	3	3	AY.67	0.001393
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	3	3	AY.7	0.000588
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	3	3	AY.82	0.004071
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	3	3	AY.88	0.002653
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	3	3	AY.93	0.000819
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	3	3	AY.99.1	0.004658
ORF1ab/nsp14A2-B	495	L495I	Ctc	Atc	3	3	B.1	0.000027
ORF1ab/nsp14A2-B	495	L495R	CTC	AGA	2	3	B.1.1	0.000036
ORF1ab/nsp14A2-B	495	L495R	cTC	cGA	1	3	B.1.1	0.000018
ORF1ab/nsp14A2-B	495	L495del	CTC	---	3	3	B.1.1.218	0.023077
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	3	3	B.1.1.220	0.005576
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	3	3	B.1.1.363	0.017964
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	3	3	B.1.1.389	0.018182
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	3	3	B.1.1.398	0.009677
ORF1ab/nsp14A2-B	495	L495del	CTC	---	3	3	B.1.1.416	0.002715
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	3	3	B.1.177.16	0.001993
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	3	3	B.1.177.83	0.004444
ORF1ab/nsp14A2-B	495	L495F	Ctc	Ttc	3	3	B.1.2	0.000026
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	3	3	B.1.232	0.001612
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	3	3	B.1.235	0.007557
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	3	3	B.1.240	0.000647
ORF1ab/nsp14A2-B	495	L495del	CTC	---	3	3	B.1.265	0.003812
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	3	3	B.1.311	0.000824
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	3	3	B.1.351.2	0.000908
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	3	3	B.1.36.9	0.009646
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	3	3	B.1.39	0.011719
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	3	3	B.1.396	0.002117
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	3	3	B.1.470	0.004213
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	3	3	B.1.480	0.007463
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	3	3	B.1.524	0.004219
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	3	3	B.1.576	0.00272
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	3	3	B.1.620	0.002838
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	3	3	B.1.621.1	0.001517
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	3	3	P.1.1	0.000953
ORF1ab/nsp14A2-B	495	L495del2	cTC	c--	2	2		0.111111
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	2	2		0.111111
ORF1ab/nsp14A2-B	495	L495del	CTC	---	2	2		0.111111
ORF1ab/nsp14A2-B	495	L495F	Ctc	Ttc	1	2		0.055556
ORF1ab/nsp14A2-B	495	L495F	CtC	TtT	1	2		0.055556
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	2	2	A.2.5.2	0.003145
ORF1ab/nsp14A2-B	495	L495A	CTC	GCT	1	2	All	0
ORF1ab/nsp14A2-B	495	L495A	CTc	GCc	1	2	All	0
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	2	2	AY.10	0.00106
ORF1ab/nsp14A2-B	495	L495del	CTC	---	2	2	AY.101	0.000981
ORF1ab/nsp14A2-B	495	L495I	Ctc	Atc	2	2	AY.102	0.000053
ORF1ab/nsp14A2-B	495	L495I	Ctc	Atc	2	2	AY.103	0.000012
ORF1ab/nsp14A2-B	495	L495del	CTC	---	2	2	AY.107	0.000932
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	2	2	AY.110	0.000225
ORF1ab/nsp14A2-B	495	L495del	CTC	---	2	2	AY.120	0.000074
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	2	2	AY.23.1	0.000835
ORF1ab/nsp14A2-B	495	L495F	Ctc	Ttc	2	2	AY.25	0.000012
ORF1ab/nsp14A2-B	495	L495S	CTC	TCT	1	2	AY.43	0.000004
ORF1ab/nsp14A2-B	495	L495R	cTC	cGT	1	2	AY.43	0.000004
ORF1ab/nsp14A2-B	495	L495S	CTc	AGc	1	2	AY.43	0.000004
ORF1ab/nsp14A2-B	495	L495R	cTc	cGc	1	2	AY.43	0.000004
ORF1ab/nsp14A2-B	495	L495P	cTC	cCT	1	2	AY.44	0.000006
ORF1ab/nsp14A2-B	495	L495P	cTc	cCc	1	2	AY.44	0.000006
ORF1ab/nsp14A2-B	495	L495del	CTC	---	2	2	AY.46.6	0.000144
ORF1ab/nsp14A2-B	495	L495del	CTC	---	2	2	AY.5.3	0.000675
ORF1ab/nsp14A2-B	495	L495del	CTC	---	2	2	AY.5.4	0.000553
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	2	2	AY.55	0.001835
ORF1ab/nsp14A2-B	495	L495del	CTC	---	2	2	AY.55	0.001835
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	2	2	AY.58	0.001815
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	2	2	AY.71	0.00095
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	2	2	AY.72	0.002721
ORF1ab/nsp14A2-B	495	L495del	CTC	---	2	2	AY.75.1	0.000361
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	2	2	AY.77	0.002255
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	2	2	AY.79	0.002421
ORF1ab/nsp14A2-B	495	L495del	CTC	---	2	2	AY.85	0.000854
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	2	2	AY.86	0.00166
ORF1ab/nsp14A2-B	495	L495del	CTC	---	2	2	AY.9.1	0.000167
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	2	2	AY.92	0.000575
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	2	2	AY.94	0.000885
ORF1ab/nsp14A2-B	495	L495del	CTC	---	2	2	AY.97	0.003401
ORF1ab/nsp14A2-B	495	L495I	CtC	AtT	2	2	AY.98.1	0.000097
ORF1ab/nsp14A2-B	495	L495del	CTC	---	2	2	AY.99.2	0.000184
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	2	2	AZ.1	0.001735
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	2	2	AZ.2	0.001642
ORF1ab/nsp14A2-B	495	L495del1	ctC	ct-	2	2	B.1	0.000018
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	2	2	B.1.1.161	0.007067
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	2	2	B.1.1.171	0.007353
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	2	2	B.1.1.231	0.006192
ORF1ab/nsp14A2-B	495	L495L	ctC	ctA	2	2	B.1.1.241	0.004141
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	2	2	B.1.1.258	0.006515
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	2	2	B.1.1.265	0.006309
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	2	2	B.1.1.280	0.006173
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	2	2	B.1.1.284	0.000215
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	2	2	B.1.1.311	0.000716
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	2	2	B.1.1.326	0.003521
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	2	2	B.1.1.37	0.000386
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	2	2	B.1.1.380	0.019608
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	2	2	B.1.1.407	0.083333
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	2	2	B.1.1.409	0.005666
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	2	2	B.1.1.464	0.002946
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	2	2	B.1.1.482	0.046512
ORF1ab/nsp14A2-B	495	L495del	CTC	---	2	2	B.1.1.519	0.000079
ORF1ab/nsp14A2-B	495	L495I	Ctc	Atc	2	2	B.1.1.519	0.000079
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	2	2	B.1.1.521	0.010695
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	2	2	B.1.126	0.002551
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	2	2	B.1.139	0.001466
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	2	2	B.1.147	0.001512
ORF1ab/nsp14A2-B	495	L495del	CTC	---	2	2	B.1.160	0.000062
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	2	2	B.1.177.12	0.000303
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	2	2	B.1.177.21	0.000153
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	2	2	B.1.177.33	0.003289
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	2	2	B.1.177.35	0.001382
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	2	2	B.1.177.42	0.001789
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	2	2	B.1.177.69	0.002967
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	2	2	B.1.177.77	0.001452
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	2	2	B.1.177.86	0.000367
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	2	2	B.1.236	0.004107
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	2	2	B.1.320	0.002491
ORF1ab/nsp14A2-B	495	L495del	CTC	---	2	2	B.1.349	0.00143
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	2	2	B.1.351.3	0.001753
ORF1ab/nsp14A2-B	495	L495del	CTC	---	2	2	B.1.36.1	0.002281
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	2	2	B.1.36.17	0.000988
ORF1ab/nsp14A2-B	495	L495del	CTC	---	2	2	B.1.517	0.000854
ORF1ab/nsp14A2-B	495	L495del	CTC	---	2	2	B.1.568	0.002222
ORF1ab/nsp14A2-B	495	L495del	CTC	---	2	2	B.1.595	0.000522
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	2	2	B.1.619.1	0.001283
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	2	2	B.1.628	0.000705
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	2	2	B.1.9.3	0.076923
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	2	2	B.31	0.007463
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	2	2	B.40	0.000729
ORF1ab/nsp14A2-B	495	L495P	cTC	cCT	2	2	B.6.6	0.001778
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	2	2	C.8	0.008929
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	2	2	N.6	0.014184
ORF1ab/nsp14A2-B	495	L495del	CTC	---	2	2	P.1	0.000032
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	2	2	P.1.13	0.001797
ORF1ab/nsp14A2-B	495	L495del	CTC	---	2	2	P.1.15	0.000465
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	2	2	P.1.17	0.000324
ORF1ab/nsp14A2-B	495	L495F	Ctc	Ttc	1	1	A.1	0.000282
ORF1ab/nsp14A2-B	495	L495F	Ctc	Ttc	1	1	A.2	0.000662
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	1	1	A.2.5.3	0.010309
ORF1ab/nsp14A2-B	495	L495F	Ctc	Ttc	1	1	A.23.1	0.000704
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	1	1	A.3	0.002096
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	1	1	A.5	0.001923
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	1	1	AE.8	0.000489
ORF1ab/nsp14A2-B	495	L495Y	CTc	TAc	1	1	All	0
ORF1ab/nsp14A2-B	495	L495X	CTC	TAG	1	1	All	0
ORF1ab/nsp14A2-B	495	L495Q	cTC	cAA	1	1	All	0
ORF1ab/nsp14A2-B	495	L495K	CTC	AAA	1	1	All	0
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	1	1	AT.1	0.005128
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	1	1	AU.1	0.001266
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	1	1	AU.2	0.002421
ORF1ab/nsp14A2-B	495	L495I	Ctc	Atc	1	1	AU.2	0.002421
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	1	1	AY.1	0.000396
ORF1ab/nsp14A2-B	495	L495del	CTC	---	1	1	AY.100	0.000046
ORF1ab/nsp14A2-B	495	L495P	cTc	cCc	1	1	AY.102	0.000027
ORF1ab/nsp14A2-B	495	L495del1	CTC	-CT	1	1	AY.103	0.000006
ORF1ab/nsp14A2-B	495	L495del	CTC	---	1	1	AY.105	0.000643
ORF1ab/nsp14A2-B	495	L495del	CTC	---	1	1	AY.106	0.000335
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	1	1	AY.107	0.000466
ORF1ab/nsp14A2-B	495	L495del	CTC	---	1	1	AY.108	0.001103
ORF1ab/nsp14A2-B	495	L495A	CTc	GCc	1	1	AY.110	0.000113
ORF1ab/nsp14A2-B	495	L495del	CTC	---	1	1	AY.113	0.000142
ORF1ab/nsp14A2-B	495	L495del	CTC	---	1	1	AY.116	0.000287
ORF1ab/nsp14A2-B	495	L495H	cTc	cAc	1	1	AY.119	0.000035
ORF1ab/nsp14A2-B	495	L495V	CtC	GtG	1	1	AY.119	0.000035
ORF1ab/nsp14A2-B	495	L495I	Ctc	Atc	1	1	AY.120	0.000037
ORF1ab/nsp14A2-B	495	L495del	CTC	---	1	1	AY.120.2	0.001285
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	1	1	AY.120.2.1	0.000498
ORF1ab/nsp14A2-B	495	L495del	CTC	---	1	1	AY.13	0.000161
ORF1ab/nsp14A2-B	495	L495del	CTC	---	1	1	AY.16.1	0.00047
ORF1ab/nsp14A2-B	495	L495del	CTC	---	1	1	AY.20	0.000039
ORF1ab/nsp14A2-B	495	L495H	cTc	cAc	1	1	AY.20	0.000039
ORF1ab/nsp14A2-B	495	L495P	cTc	cCc	1	1	AY.20	0.000039
ORF1ab/nsp14A2-B	495	L495del	CTC	---	1	1	AY.21	0.001898
ORF1ab/nsp14A2-B	495	L495P	cTc	cCc	1	1	AY.23	0.00007
ORF1ab/nsp14A2-B	495	L495I	Ctc	Atc	1	1	AY.25	0.000006
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	1	1	AY.28	0.00189
ORF1ab/nsp14A2-B	495	L495P	cTC	cCT	1	1	AY.3	0.00001
ORF1ab/nsp14A2-B	495	L495F	Ctc	Ttc	1	1	AY.34.1	0.00051
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	1	1	AY.34.1	0.00051
ORF1ab/nsp14A2-B	495	L495R	cTc	cGc	1	1	AY.34.1	0.00051
ORF1ab/nsp14A2-B	495	L495I	Ctc	Atc	1	1	AY.39	0.000025
ORF1ab/nsp14A2-B	495	L495R	cTc	cGc	1	1	AY.4	0.000002
ORF1ab/nsp14A2-B	495	L495V	Ctc	Gtc	1	1	AY.4	0.000002
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	1	1	AY.4.1	0.000737
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	1	1	AY.40	0.000964
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	1	1	AY.41	0.000294
ORF1ab/nsp14A2-B	495	L495P	cTc	cCc	1	1	AY.42	0.00004
ORF1ab/nsp14A2-B	495	L495del2	CTc	--c	1	1	AY.43	0.000004
ORF1ab/nsp14A2-B	495	L495P	cTc	cCc	1	1	AY.43	0.000004
ORF1ab/nsp14A2-B	495	L495V	CtC	GtT	1	1	AY.43	0.000004
ORF1ab/nsp14A2-B	495	L495F	Ctc	Ttc	1	1	AY.44	0.000006
ORF1ab/nsp14A2-B	495	L495del	CTC	---	1	1	AY.45	0.000122
ORF1ab/nsp14A2-B	495	L495S	CTC	TCT	1	1	AY.46	0.000104
ORF1ab/nsp14A2-B	495	L495del	CTC	---	1	1	AY.46	0.000104
ORF1ab/nsp14A2-B	495	L495del	CTC	---	1	1	AY.46.2	0.000635
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	1	1	AY.52	0.000814
ORF1ab/nsp14A2-B	495	L495del	CTC	---	1	1	AY.53	0.000288
ORF1ab/nsp14A2-B	495	L495del	CTC	---	1	1	AY.54	0.000095
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	1	1	AY.57	0.000656
ORF1ab/nsp14A2-B	495	L495del	CTC	---	1	1	AY.59	0.00053
ORF1ab/nsp14A2-B	495	L495I	Ctc	Atc	1	1	AY.61	0.000105
ORF1ab/nsp14A2-B	495	L495del	CTC	---	1	1	AY.62	0.000436
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	1	1	AY.63	0.000387
ORF1ab/nsp14A2-B	495	L495del	CTC	---	1	1	AY.67	0.000464
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	1	1	AY.7.2	0.000559
ORF1ab/nsp14A2-B	495	L495I	Ctc	Atc	1	1	AY.7.2	0.000559
ORF1ab/nsp14A2-B	495	L495del	CTC	---	1	1	AY.7.2	0.000559
ORF1ab/nsp14A2-B	495	L495del	CTC	---	1	1	AY.78	0.001541
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	1	1	AY.80	0.001129
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	1	1	AY.81	0.001992
ORF1ab/nsp14A2-B	495	L495I	Ctc	Atc	1	1	AY.82	0.001357
ORF1ab/nsp14A2-B	495	L495del	CTC	---	1	1	AY.84	0.000437
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	1	1	AY.85	0.000427
ORF1ab/nsp14A2-B	495	L495del1	CtC	Nt-	1	1	AY.85	0.000427
ORF1ab/nsp14A2-B	495	L495H	cTc	cAc	1	1	AY.85	0.000427
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	1	1	AY.89	0.004902
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	1	1	AY.90	0.000684
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	1	1	AY.91	0.00073
ORF1ab/nsp14A2-B	495	L495del	CTC	---	1	1	AY.94	0.000443
ORF1ab/nsp14A2-B	495	L495I	CtC	AtT	1	1	AY.98	0.000079
ORF1ab/nsp14A2-B	495	L495P	cTC	cCT	1	1	AY.98.1	0.000048
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	1	1	AY.99	0.001049
ORF1ab/nsp14A2-B	495	L495del	CTC	---	1	1	AY.99	0.001049
ORF1ab/nsp14A2-B	495	L495del	CTC	---	1	1	B	0.000128
ORF1ab/nsp14A2-B	495	L495A	CTC	GCT	1	1	B.1	0.000009
ORF1ab/nsp14A2-B	495	L495H	cTc	cAc	1	1	B.1	0.000009
ORF1ab/nsp14A2-B	495	L495P	cTC	cCG	1	1	B.1	0.000009
ORF1ab/nsp14A2-B	495	L495K	CTC	AAA	1	1	B.1.1	0.000018
ORF1ab/nsp14A2-B	495	L495Q	cTC	cAA	1	1	B.1.1	0.000018
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	1	1	B.1.1.135	0.004695
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	1	1	B.1.1.137	0.0125
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	1	1	B.1.1.159	0.004673
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	1	1	B.1.1.163	0.007634
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	1	1	B.1.1.168	0.026316
ORF1ab/nsp14A2-B	495	L495del	CTC	---	1	1	B.1.1.174	0.003378
ORF1ab/nsp14A2-B	495	L495I	Ctc	Atc	1	1	B.1.1.180	0.010753
ORF1ab/nsp14A2-B	495	L495del	CTC	---	1	1	B.1.1.189	0.001513
ORF1ab/nsp14A2-B	495	L495H	cTc	cAc	1	1	B.1.1.189	0.001513
ORF1ab/nsp14A2-B	495	L495del	CTC	---	1	1	B.1.1.192	0.002309
ORF1ab/nsp14A2-B	495	L495del	CTC	---	1	1	B.1.1.194	0.00495
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	1	1	B.1.1.207	0.001182
ORF1ab/nsp14A2-B	495	L495del	CTC	---	1	1	B.1.1.207	0.001182
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	1	1	B.1.1.234	0.012048
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	1	1	B.1.1.237	0.005405
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	1	1	B.1.1.239	0.032258
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	1	1	B.1.1.273	0.006757
ORF1ab/nsp14A2-B	495	L495del1	CTC	-NN	1	1	B.1.1.277	0.000759
ORF1ab/nsp14A2-B	495	L495del	CTC	---	1	1	B.1.1.277	0.000759
ORF1ab/nsp14A2-B	495	L495del	CTC	---	1	1	B.1.1.282	0.011628
ORF1ab/nsp14A2-B	495	L495I	Ctc	Atc	1	1	B.1.1.284	0.000107
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	1	1	B.1.1.291	0.000742
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	1	1	B.1.1.294	0.001266
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	1	1	B.1.1.298	0.000862
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	1	1	B.1.1.299	0.012195
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	1	1	B.1.1.303	0.002762
ORF1ab/nsp14A2-B	495	L495del	CTC	---	1	1	B.1.1.305	0.003861
ORF1ab/nsp14A2-B	495	L495del	CTC	---	1	1	B.1.1.306	0.000438
ORF1ab/nsp14A2-B	495	L495I	CtC	AtT	1	1	B.1.1.306	0.000438
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	1	1	B.1.1.315	0.008475
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	1	1	B.1.1.318	0.000302
ORF1ab/nsp14A2-B	495	L495del	CTC	---	1	1	B.1.1.348	0.000796
ORF1ab/nsp14A2-B	495	L495del	CTC	---	1	1	B.1.1.37	0.000193
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	1	1	B.1.1.372	0.000689
ORF1ab/nsp14A2-B	495	L495del	CTC	---	1	1	B.1.1.409	0.002833
ORF1ab/nsp14A2-B	495	L495F	CtC	TtT	1	1	B.1.1.411	0.014706
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	1	1	B.1.1.419	0.007407
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	1	1	B.1.1.429	0.004608
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	1	1	B.1.1.430	0.041667
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	1	1	B.1.1.431	0.016129
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	1	1	B.1.1.433	0.001425
ORF1ab/nsp14A2-B	495	L495del	CTC	---	1	1	B.1.1.434	0.000349
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	1	1	B.1.1.446	0.076923
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	1	1	B.1.1.448	0.002033
ORF1ab/nsp14A2-B	495	L495del	CTC	---	1	1	B.1.1.46	0.004367
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	1	1	B.1.1.462	0.008621
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	1	1	B.1.1.466	0.008696
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	1	1	B.1.1.486	0.001577
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	1	1	B.1.1.517	0.006803
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	1	1	B.1.1.523	0.001563
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	1	1	B.1.1.54	0.003021
ORF1ab/nsp14A2-B	495	L495del2	cTC	c--	1	1	B.1.1.7	0.000001
ORF1ab/nsp14A2-B	495	L495R	CTC	AGA	1	1	B.1.1.7	0.000001
ORF1ab/nsp14A2-B	495	L495X	CTC	TAG	1	1	B.1.1.7	0.000001
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	1	1	B.1.1.77	0.041667
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	1	1	B.1.119	0.010526
ORF1ab/nsp14A2-B	495	L495I	Ctc	Atc	1	1	B.1.160	0.000031
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	1	1	B.1.160.22	0.006757
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	1	1	B.1.160.8	0.001289
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	1	1	B.1.165	0.011905
ORF1ab/nsp14A2-B	495	L495P	cTc	cCc	1	1	B.1.177	0.000013
ORF1ab/nsp14A2-B	495	L495H	cTc	cAc	1	1	B.1.177	0.000013
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	1	1	B.1.177.15	0.000631
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	1	1	B.1.177.17	0.000821
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	1	1	B.1.177.2	0.004545
ORF1ab/nsp14A2-B	495	L495I	Ctc	Atc	1	1	B.1.177.21	0.000076
ORF1ab/nsp14A2-B	495	L495F	Ctc	Ttc	1	1	B.1.177.21	0.000076
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	1	1	B.1.177.40	0.005155
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	1	1	B.1.177.44	0.000519
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	1	1	B.1.177.45	0.000381
ORF1ab/nsp14A2-B	495	L495del	CTC	---	1	1	B.1.177.50	0.004695
ORF1ab/nsp14A2-B	495	L495del2	CTc	--c	1	1	B.1.177.51	0.004566
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	1	1	B.1.177.57	0.000281
ORF1ab/nsp14A2-B	495	L495I	Ctc	Atc	1	1	B.1.177.62	0.001192
ORF1ab/nsp14A2-B	495	L495del	CTC	---	1	1	B.1.177.62	0.001192
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	1	1	B.1.177.65	0.000665
ORF1ab/nsp14A2-B	495	L495del	CTC	---	1	1	B.1.177.68	0.015152
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	1	1	B.1.177.76	0.002494
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	1	1	B.1.177.82	0.000477
ORF1ab/nsp14A2-B	495	L495I	Ctc	Atc	1	1	B.1.177.83	0.001481
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	1	1	B.1.177.84	0.006667
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	1	1	B.1.180	0.05
ORF1ab/nsp14A2-B	495	L495del1	ctC	ct-	1	1	B.1.2	0.000009
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	1	1	B.1.203	0.0625
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	1	1	B.1.206	0.000816
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	1	1	B.1.218	0.005155
ORF1ab/nsp14A2-B	495	L495F	Ctc	Ttc	1	1	B.1.234	0.000132
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	1	1	B.1.241	0.000812
ORF1ab/nsp14A2-B	495	L495del	CTC	---	1	1	B.1.242	0.018868
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	1	1	B.1.243.1	0.022222
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	1	1	B.1.258.16	0.001637
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	1	1	B.1.258.4	0.003448
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	1	1	B.1.260	0.003344
ORF1ab/nsp14A2-B	495	L495del	CTC	---	1	1	B.1.291	0.019231
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	1	1	B.1.293	0.0125
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	1	1	B.1.324	0.001605
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	1	1	B.1.338	0.008621
ORF1ab/nsp14A2-B	495	L495del1	CTC	-NN	1	1	B.1.36	0.000146
ORF1ab/nsp14A2-B	495	L495H	cTc	cAc	1	1	B.1.36.1	0.00114
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	1	1	B.1.36.1	0.00114
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	1	1	B.1.36.18	0.00042
ORF1ab/nsp14A2-B	495	L495del	CTC	---	1	1	B.1.36.31	0.001751
ORF1ab/nsp14A2-B	495	L495del	CTC	---	1	1	B.1.36.35	0.002604
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	1	1	B.1.36.35	0.002604
ORF1ab/nsp14A2-B	495	L495F	CtC	TtT	1	1	B.1.36.8	0.001
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	1	1	B.1.362	0.001541
ORF1ab/nsp14A2-B	495	L495F	Ctc	Ttc	1	1	B.1.369	0.000285
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	1	1	B.1.38	0.032258
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	1	1	B.1.381	0.007812
ORF1ab/nsp14A2-B	495	L495I	Ctc	Atc	1	1	B.1.389	0.001002
ORF1ab/nsp14A2-B	495	L495del	CTC	---	1	1	B.1.395	0.007042
ORF1ab/nsp14A2-B	495	L495F	Ctc	Ttc	1	1	B.1.395	0.007042
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	1	1	B.1.398	0.002976
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	1	1	B.1.40	0.019608
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	1	1	B.1.400	0.000429
ORF1ab/nsp14A2-B	495	L495del	CTC	---	1	1	B.1.409	0.000781
ORF1ab/nsp14A2-B	495	L495del	CTC	---	1	1	B.1.416.1	0.001563
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	1	1	B.1.422	0.000812
ORF1ab/nsp14A2-B	495	L495H	cTc	cAc	1	1	B.1.427	0.00005
ORF1ab/nsp14A2-B	495	L495del	CTC	---	1	1	B.1.427	0.00005
ORF1ab/nsp14A2-B	495	L495F	Ctc	Ttc	1	1	B.1.427	0.00005
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	1	1	B.1.428	0.00102
ORF1ab/nsp14A2-B	495	L495del	CTC	---	1	1	B.1.438	0.006536
ORF1ab/nsp14A2-B	495	L495del	CTC	---	1	1	B.1.439	0.005917
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	1	1	B.1.460	0.017857
ORF1ab/nsp14A2-B	495	L495P	cTc	cCc	1	1	B.1.466.2	0.000391
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	1	1	B.1.468	0.005714
ORF1ab/nsp14A2-B	495	L495del	CTC	---	1	1	B.1.471	0.002732
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	1	1	B.1.474	0.001901
ORF1ab/nsp14A2-B	495	L495I	Ctc	Atc	1	1	B.1.485	0.014925
ORF1ab/nsp14A2-B	495	L495H	cTc	cAc	1	1	B.1.497	0.000315
ORF1ab/nsp14A2-B	495	L495R	cTc	cGc	1	1	B.1.497	0.000315
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	1	1	B.1.500	0.052632
ORF1ab/nsp14A2-B	495	L495del	CTC	---	1	1	B.1.525	0.000113
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	1	1	B.1.533	0.009615
ORF1ab/nsp14A2-B	495	L495del	CTC	---	1	1	B.1.551	0.00129
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	1	1	B.1.554	0.004405
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	1	1	B.1.564.1	0.001577
ORF1ab/nsp14A2-B	495	L495del	CTC	---	1	1	B.1.575	0.000303
ORF1ab/nsp14A2-B	495	L495del	CTC	---	1	1	B.1.576	0.000907
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	1	1	B.1.579	0.011236
ORF1ab/nsp14A2-B	495	L495P	cTc	cCc	1	1	B.1.595	0.000261
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	1	1	B.1.597	0.00463
ORF1ab/nsp14A2-B	495	L495F	Ctc	Ttc	1	1	B.1.606	0.006024
ORF1ab/nsp14A2-B	495	L495Y	CTc	TAc	1	1	B.1.617.2	0.000004
ORF1ab/nsp14A2-B	495	L495F	Ctc	Ttc	1	1	B.1.617.2	0.000004
ORF1ab/nsp14A2-B	495	L495R	cTc	cGc	1	1	B.1.617.2	0.000004
ORF1ab/nsp14A2-B	495	L495P	cTc	cCc	1	1	B.1.617.2	0.000004
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	1	1	B.1.619	0.000871
ORF1ab/nsp14A2-B	495	L495V	Ctc	Gtc	1	1	B.1.621	0.000089
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	1	1	B.1.81	0.021277
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	1	1	B.1.93	0.000934
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	1	1	B.3.1	0.001658
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	1	1	B.35	0.007812
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	1	1	B.46	0.020833
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	1	1	B.6.8	0.008264
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	1	1	C.1	0.002392
ORF1ab/nsp14A2-B	495	L495del	CTC	---	1	1	C.1.2	0.004255
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	1	1	C.11	0.010638
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	1	1	C.14	0.004329
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	1	1	C.23	0.005814
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	1	1	C.26	0.007353
ORF1ab/nsp14A2-B	495	L495del	CTC	---	1	1	C.37	0.000116
ORF1ab/nsp14A2-B	495	L495del	CTC	---	1	1	C.5	0.090909
ORF1ab/nsp14A2-B	495	L495F	Ctc	Ttc	1	1	D.2	0.000075
ORF1ab/nsp14A2-B	495	L495I	Ctc	Atc	1	1	D.2	0.000075
ORF1ab/nsp14A2-B	495	L495H	cTc	cAc	1	1	D.2	0.000075
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	1	1	N.3	0.005814
ORF1ab/nsp14A2-B	495	L495del1	ctC	ct-	1	1	P.1	0.000016
ORF1ab/nsp14A2-B	495	L495F	Ctc	Ttc	1	1	P.1.14	0.000048
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	1	1	P.1.16	0.000374
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	1	1	P.4	0.003802
ORF1ab/nsp14A2-B	495	L495del	CTC	---	1	1	Q.1	0.000126
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	1	1	Q.2	0.000613
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	1	1	Q.7	0.001111
ORF1ab/nsp14A2-B	495	L495L	ctC	ctT	1	1	W.4	0.001351

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.