CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp14A2-B | 491 | Y491del | Y6416del | del | TAC | --- | 734 | 734 | 1 | 19510-19512 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp14A2-B | 491 | Y491del | TAC | --- | 734 | 734 | All | 0.00014 |
ORF1ab/nsp14A2-B | 491 | Y491del | TAC | --- | 154 | 154 | AY.43 | 0.000682 |
ORF1ab/nsp14A2-B | 491 | Y491del | TAC | --- | 76 | 76 | B.1.2 | 0.000669 |
ORF1ab/nsp14A2-B | 491 | Y491del | TAC | --- | 46 | 46 | B.1.617.2 | 0.000173 |
ORF1ab/nsp14A2-B | 491 | Y491del | TAC | --- | 44 | 44 | B.1.1.7 | 0.000039 |
ORF1ab/nsp14A2-B | 491 | Y491del | TAC | --- | 35 | 35 | AY.25 | 0.000211 |
ORF1ab/nsp14A2-B | 491 | Y491del | TAC | --- | 28 | 28 | B.1 | 0.000256 |
ORF1ab/nsp14A2-B | 491 | Y491del | TAC | --- | 20 | 20 | AY.44 | 0.000122 |
ORF1ab/nsp14A2-B | 491 | Y491del | TAC | --- | 19 | 19 | AY.34.1 | 0.009689 |
ORF1ab/nsp14A2-B | 491 | Y491del | TAC | --- | 15 | 15 | AY.3 | 0.000149 |
ORF1ab/nsp14A2-B | 491 | Y491del | TAC | --- | 13 | 13 | B.1.526 | 0.000306 |
ORF1ab/nsp14A2-B | 491 | Y491del | TAC | --- | 12 | 12 | B.1.1 | 0.000218 |
ORF1ab/nsp14A2-B | 491 | Y491del | TAC | --- | 12 | 12 | B.1.351 | 0.000357 |
ORF1ab/nsp14A2-B | 491 | Y491del | TAC | --- | 11 | 11 | AY.103 | 0.000068 |
ORF1ab/nsp14A2-B | 491 | Y491del | TAC | --- | 11 | 11 | AY.39 | 0.000272 |
ORF1ab/nsp14A2-B | 491 | Y491del | TAC | --- | 10 | 10 | AY.9.2 | 0.000367 |
ORF1ab/nsp14A2-B | 491 | Y491del | TAC | --- | 9 | 9 | AY.75 | 0.000504 |
ORF1ab/nsp14A2-B | 491 | Y491del | TAC | --- | 8 | 8 | AY.102 | 0.000212 |
ORF1ab/nsp14A2-B | 491 | Y491del | TAC | --- | 8 | 8 | AY.52 | 0.006515 |
ORF1ab/nsp14A2-B | 491 | Y491del | TAC | --- | 8 | 8 | AY.98.1 | 0.000387 |
ORF1ab/nsp14A2-B | 491 | Y491del | TAC | --- | 8 | 8 | B.1.596 | 0.000697 |
ORF1ab/nsp14A2-B | 491 | Y491del | TAC | --- | 7 | 7 | AY.4 | 0.000011 |
ORF1ab/nsp14A2-B | 491 | Y491del | TAC | --- | 7 | 7 | B.1.429 | 0.000165 |
ORF1ab/nsp14A2-B | 491 | Y491del | TAC | --- | 6 | 6 | AY.118 | 0.000376 |
ORF1ab/nsp14A2-B | 491 | Y491del | TAC | --- | 6 | 6 | AY.42 | 0.000241 |
ORF1ab/nsp14A2-B | 491 | Y491del | TAC | --- | 5 | 5 | AY.119 | 0.000177 |
ORF1ab/nsp14A2-B | 491 | Y491del | TAC | --- | 5 | 5 | B.1.177 | 0.000066 |
ORF1ab/nsp14A2-B | 491 | Y491del | TAC | --- | 5 | 5 | B.1.243 | 0.000348 |
ORF1ab/nsp14A2-B | 491 | Y491del | TAC | --- | 4 | 4 | 0.222222 | |
ORF1ab/nsp14A2-B | 491 | Y491del | TAC | --- | 4 | 4 | AY.11 | 0.005355 |
ORF1ab/nsp14A2-B | 491 | Y491del | TAC | --- | 4 | 4 | AY.110 | 0.000451 |
ORF1ab/nsp14A2-B | 491 | Y491del | TAC | --- | 4 | 4 | AY.23 | 0.000279 |
ORF1ab/nsp14A2-B | 491 | Y491del | TAC | --- | 4 | 4 | AY.33 | 0.000267 |
ORF1ab/nsp14A2-B | 491 | Y491del | TAC | --- | 4 | 4 | AY.65 | 0.002132 |
ORF1ab/nsp14A2-B | 491 | Y491del | TAC | --- | 4 | 4 | B.1.36 | 0.000584 |
ORF1ab/nsp14A2-B | 491 | Y491del | TAC | --- | 4 | 4 | B.1.617.1 | 0.000516 |
ORF1ab/nsp14A2-B | 491 | Y491del | TAC | --- | 3 | 3 | AY.100 | 0.000138 |
ORF1ab/nsp14A2-B | 491 | Y491del | TAC | --- | 3 | 3 | AY.3.1 | 0.000256 |
ORF1ab/nsp14A2-B | 491 | Y491del | TAC | --- | 3 | 3 | B.1.1.218 | 0.023077 |
ORF1ab/nsp14A2-B | 491 | Y491del | TAC | --- | 3 | 3 | B.1.1.416 | 0.002715 |
ORF1ab/nsp14A2-B | 491 | Y491del | TAC | --- | 3 | 3 | B.1.265 | 0.003812 |
ORF1ab/nsp14A2-B | 491 | Y491del | TAC | --- | 2 | 2 | AY.101 | 0.000981 |
ORF1ab/nsp14A2-B | 491 | Y491del | TAC | --- | 2 | 2 | AY.107 | 0.000932 |
ORF1ab/nsp14A2-B | 491 | Y491del | TAC | --- | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp14A2-B | 491 | Y491del | TAC | --- | 2 | 2 | AY.20 | 0.000078 |
ORF1ab/nsp14A2-B | 491 | Y491del | TAC | --- | 2 | 2 | AY.5.3 | 0.000675 |
ORF1ab/nsp14A2-B | 491 | Y491del | TAC | --- | 2 | 2 | AY.5.4 | 0.000553 |
ORF1ab/nsp14A2-B | 491 | Y491del | TAC | --- | 2 | 2 | AY.55 | 0.001835 |
ORF1ab/nsp14A2-B | 491 | Y491del | TAC | --- | 2 | 2 | AY.75.1 | 0.000361 |
ORF1ab/nsp14A2-B | 491 | Y491del | TAC | --- | 2 | 2 | AY.85 | 0.000854 |
ORF1ab/nsp14A2-B | 491 | Y491del | TAC | --- | 2 | 2 | AY.9.1 | 0.000167 |
ORF1ab/nsp14A2-B | 491 | Y491del | TAC | --- | 2 | 2 | AY.97 | 0.003401 |
ORF1ab/nsp14A2-B | 491 | Y491del | TAC | --- | 2 | 2 | AY.99.2 | 0.000184 |
ORF1ab/nsp14A2-B | 491 | Y491del | TAC | --- | 2 | 2 | B.1.1.277 | 0.001517 |
ORF1ab/nsp14A2-B | 491 | Y491del | TAC | --- | 2 | 2 | B.1.1.46 | 0.008734 |
ORF1ab/nsp14A2-B | 491 | Y491del | TAC | --- | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp14A2-B | 491 | Y491del | TAC | --- | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp14A2-B | 491 | Y491del | TAC | --- | 2 | 2 | B.1.221 | 0.000142 |
ORF1ab/nsp14A2-B | 491 | Y491del | TAC | --- | 2 | 2 | B.1.349 | 0.00143 |
ORF1ab/nsp14A2-B | 491 | Y491del | TAC | --- | 2 | 2 | B.1.517 | 0.000854 |
ORF1ab/nsp14A2-B | 491 | Y491del | TAC | --- | 2 | 2 | B.1.568 | 0.002222 |
ORF1ab/nsp14A2-B | 491 | Y491del | TAC | --- | 2 | 2 | B.1.595 | 0.000522 |
ORF1ab/nsp14A2-B | 491 | Y491del | TAC | --- | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp14A2-B | 491 | Y491del | TAC | --- | 2 | 2 | P.1.15 | 0.000465 |
ORF1ab/nsp14A2-B | 491 | Y491del | TAC | --- | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp14A2-B | 491 | Y491del | TAC | --- | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp14A2-B | 491 | Y491del | TAC | --- | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp14A2-B | 491 | Y491del | TAC | --- | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp14A2-B | 491 | Y491del | TAC | --- | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp14A2-B | 491 | Y491del | TAC | --- | 1 | 1 | AY.120.2 | 0.001285 |
ORF1ab/nsp14A2-B | 491 | Y491del | TAC | --- | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp14A2-B | 491 | Y491del | TAC | --- | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp14A2-B | 491 | Y491del | TAC | --- | 1 | 1 | AY.21 | 0.001898 |
ORF1ab/nsp14A2-B | 491 | Y491del | TAC | --- | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp14A2-B | 491 | Y491del | TAC | --- | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp14A2-B | 491 | Y491del | TAC | --- | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp14A2-B | 491 | Y491del | TAC | --- | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp14A2-B | 491 | Y491del | TAC | --- | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp14A2-B | 491 | Y491del | TAC | --- | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp14A2-B | 491 | Y491del | TAC | --- | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp14A2-B | 491 | Y491del | TAC | --- | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp14A2-B | 491 | Y491del | TAC | --- | 1 | 1 | AY.7.2 | 0.000559 |
ORF1ab/nsp14A2-B | 491 | Y491del | TAC | --- | 1 | 1 | AY.78 | 0.001541 |
ORF1ab/nsp14A2-B | 491 | Y491del | TAC | --- | 1 | 1 | AY.94 | 0.000443 |
ORF1ab/nsp14A2-B | 491 | Y491del | TAC | --- | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp14A2-B | 491 | Y491del | TAC | --- | 1 | 1 | B.1.1.174 | 0.003378 |
ORF1ab/nsp14A2-B | 491 | Y491del | TAC | --- | 1 | 1 | B.1.1.192 | 0.002309 |
ORF1ab/nsp14A2-B | 491 | Y491del | TAC | --- | 1 | 1 | B.1.1.194 | 0.00495 |
ORF1ab/nsp14A2-B | 491 | Y491del | TAC | --- | 1 | 1 | B.1.1.207 | 0.001182 |
ORF1ab/nsp14A2-B | 491 | Y491del | TAC | --- | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp14A2-B | 491 | Y491del | TAC | --- | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp14A2-B | 491 | Y491del | TAC | --- | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp14A2-B | 491 | Y491del | TAC | --- | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp14A2-B | 491 | Y491del | TAC | --- | 1 | 1 | B.1.1.411 | 0.014706 |
ORF1ab/nsp14A2-B | 491 | Y491del | TAC | --- | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp14A2-B | 491 | Y491del | TAC | --- | 1 | 1 | B.1.177.18 | 0.00116 |
ORF1ab/nsp14A2-B | 491 | Y491del | TAC | --- | 1 | 1 | B.1.177.50 | 0.004695 |
ORF1ab/nsp14A2-B | 491 | Y491del | TAC | --- | 1 | 1 | B.1.177.51 | 0.004566 |
ORF1ab/nsp14A2-B | 491 | Y491del | TAC | --- | 1 | 1 | B.1.177.62 | 0.001192 |
ORF1ab/nsp14A2-B | 491 | Y491del | TAC | --- | 1 | 1 | B.1.177.68 | 0.015152 |
ORF1ab/nsp14A2-B | 491 | Y491del | TAC | --- | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp14A2-B | 491 | Y491del | TAC | --- | 1 | 1 | B.1.291 | 0.019231 |
ORF1ab/nsp14A2-B | 491 | Y491del | TAC | --- | 1 | 1 | B.1.36.31 | 0.001751 |
ORF1ab/nsp14A2-B | 491 | Y491del | TAC | --- | 1 | 1 | B.1.36.35 | 0.002604 |
ORF1ab/nsp14A2-B | 491 | Y491del | TAC | --- | 1 | 1 | B.1.395 | 0.007042 |
ORF1ab/nsp14A2-B | 491 | Y491del | TAC | --- | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp14A2-B | 491 | Y491del | TAC | --- | 1 | 1 | B.1.416.1 | 0.001563 |
ORF1ab/nsp14A2-B | 491 | Y491del | TAC | --- | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp14A2-B | 491 | Y491del | TAC | --- | 1 | 1 | B.1.439 | 0.005917 |
ORF1ab/nsp14A2-B | 491 | Y491del | TAC | --- | 1 | 1 | B.1.471 | 0.002732 |
ORF1ab/nsp14A2-B | 491 | Y491del | TAC | --- | 1 | 1 | B.1.551 | 0.00129 |
ORF1ab/nsp14A2-B | 491 | Y491del | TAC | --- | 1 | 1 | B.1.575 | 0.000303 |
ORF1ab/nsp14A2-B | 491 | Y491del | TAC | --- | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp14A2-B | 491 | Y491del | TAC | --- | 1 | 1 | C.1.2 | 0.004255 |
ORF1ab/nsp14A2-B | 491 | Y491del | TAC | --- | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp14A2-B | 491 | Y491del | TAC | --- | 1 | 1 | C.5 | 0.090909 |
ORF1ab/nsp14A2-B | 491 | Y491del | TAC | --- | 1 | 1 | Q.1 | 0.000126 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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