CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp14A2-B | 483 | V483V | V6408V | syn | gtC | gtT | 4241 | 4091 | 0.964631 | 19486-19488 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 4091 | 4241 | All | 0.000782 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 415 | 474 | B.1.617.2 | 0.001563 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 383 | 383 | B.1.298 | 0.809725 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 343 | 348 | AY.43 | 0.00152 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 276 | 288 | B.1.1.7 | 0.000247 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 281 | 286 | AY.4 | 0.000437 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 273 | 273 | B.1.1.217 | 0.992727 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 196 | 196 | S.1 | 0.970297 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 195 | 195 | B.1.1.219 | 0.975 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 186 | 186 | B.1.1 | 0.003374 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 165 | 165 | B.1.351 | 0.004905 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 119 | 119 | B.1.234 | 0.015701 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 108 | 108 | B.1.1.218 | 0.830769 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 79 | 91 | P.1 | 0.001245 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 73 | 73 | B.1.518 | 0.858824 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 67 | 67 | B.1.369 | 0.01911 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 64 | 64 | B.1.177 | 0.000843 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 61 | 61 | AY.29 | 0.000962 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 59 | 59 | AY.56 | 0.094703 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 57 | 58 | B.1 | 0.000522 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 44 | 46 | AY.3 | 0.000438 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 45 | 45 | B.1.2 | 0.000396 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 44 | 44 | AY.25 | 0.000265 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 42 | 42 | B.1.239 | 0.051282 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 29 | 40 | AY.103 | 0.00018 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 33 | 39 | AY.44 | 0.000201 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 31 | 32 | AY.102 | 0.000822 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 29 | 29 | P.1.17 | 0.004691 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 27 | 27 | B.1.36 | 0.003939 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 17 | 17 | AY.119 | 0.0006 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 14 | 14 | AY.100 | 0.000644 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 7 | 14 | AY.65 | 0.003731 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 14 | 14 | C.37 | 0.001625 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 12 | 12 | AY.118 | 0.000752 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 12 | 12 | B.1.1.519 | 0.000477 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 11 | 11 | B.1.177.9 | 0.014647 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 10 | 10 | AY.5 | 0.000206 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 10 | 10 | B.1.429 | 0.000235 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 1 | 10 | B.1.525 | 0.000113 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 8 | 8 | AY.39 | 0.000198 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 8 | 8 | B.1.1.50 | 0.005431 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 8 | 8 | B.1.243 | 0.000557 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 7 | 7 | AY.59 | 0.003708 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 7 | 7 | B.1.526 | 0.000165 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 7 | 7 | B.1.527 | 0.025926 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 7 | 7 | P.1.14 | 0.000335 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 5 | 5 | AY.121 | 0.000677 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 5 | 5 | B.1.1.33 | 0.002104 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 4 | 4 | AY.23.1 | 0.001669 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 4 | 4 | AY.4.2 | 0.000087 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 4 | 4 | AY.9.2 | 0.000147 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 4 | 4 | B.1.349 | 0.002859 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 4 | 4 | B.1.595 | 0.001044 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 1 | 4 | B.1.621 | 0.000089 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 3 | 3 | AY.117 | 0.000254 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 3 | 3 | AY.120 | 0.000112 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 2 | 3 | AY.23 | 0.000139 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 3 | 3 | AY.26 | 0.000085 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 3 | 3 | AY.33 | 0.0002 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 3 | 3 | AY.46 | 0.000312 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 3 | 3 | AY.6 | 0.000123 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 3 | 3 | AY.75 | 0.000168 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 3 | 3 | AY.75.1 | 0.000541 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 3 | 3 | B.1.1.523 | 0.004687 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 3 | 3 | B.1.177.68 | 0.045455 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 3 | 3 | B.1.177.83 | 0.004444 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 2 | 3 | B.1.311 | 0.000549 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 3 | 3 | B.1.36.10 | 0.014354 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 3 | 3 | B.1.367 | 0.002377 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 3 | 3 | B.1.427 | 0.000151 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 3 | 3 | B.1.575 | 0.00091 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 2 | 3 | C.36 | 0.001821 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 3 | 3 | P.2 | 0.00056 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 3 | 3 | R.1 | 0.00027 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 2 | 2 | AY.111 | 0.000366 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 2 | 2 | AY.32 | 0.001065 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 2 | 2 | AY.42 | 0.00008 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 2 | 2 | AY.63 | 0.000774 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 2 | 2 | AY.68 | 0.000547 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 2 | 2 | AY.7.2 | 0.001119 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 2 | 2 | AY.85 | 0.000854 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 2 | 2 | AY.87 | 0.001665 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 2 | 2 | AY.9 | 0.000135 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 2 | 2 | AY.98 | 0.000158 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 2 | 2 | B.1.1.1 | 0.000653 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 2 | 2 | B.1.1.284 | 0.000215 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 2 | 2 | B.1.1.335 | 0.025974 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 2 | 2 | B.1.1.409 | 0.005666 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 2 | 2 | B.1.1.416 | 0.00181 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 1 | 2 | B.1.1.434 | 0.000349 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 2 | 2 | B.1.1.464 | 0.002946 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 2 | 2 | B.1.177.35 | 0.001382 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 2 | 2 | B.1.177.4 | 0.000422 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 2 | 2 | B.1.177.55 | 0.004662 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 2 | 2 | B.1.36.29 | 0.001035 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 2 | 2 | B.1.428 | 0.002041 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 2 | 2 | B.1.466.2 | 0.000782 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 2 | 2 | B.1.564 | 0.000852 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 1 | 2 | B.1.617.1 | 0.000129 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 2 | 2 | B.1.628 | 0.000705 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 2 | 2 | P.1.13 | 0.001797 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 1 | 1 | A.23.1 | 0.000704 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 1 | 1 | A.3 | 0.002096 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 1 | 1 | AV.1 | 0.005051 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 1 | 1 | AY.109 | 0.00074 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 1 | 1 | AY.22 | 0.002092 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 1 | 1 | AY.28 | 0.00189 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 1 | 1 | B | 0.000128 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 1 | 1 | B.1.1.101 | 0.01 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 1 | 1 | B.1.1.141 | 0.002012 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 1 | 1 | B.1.1.213 | 0.021739 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 1 | 1 | B.1.1.220 | 0.001859 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 1 | 1 | B.1.1.227 | 0.004348 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 1 | 1 | B.1.1.305 | 0.003861 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 1 | 1 | B.1.1.322 | 0.008772 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 1 | 1 | B.1.1.517 | 0.006803 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 1 | 1 | B.1.1.54 | 0.003021 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 1 | 1 | B.1.14 | 0.017544 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 1 | 1 | B.1.177.10 | 0.000878 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 1 | 1 | B.1.177.8 | 0.000752 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 1 | 1 | B.1.214.2 | 0.0006 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 1 | 1 | B.1.260 | 0.003344 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 1 | 1 | B.1.456 | 0.003268 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 1 | 1 | B.1.510 | 0.026316 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 1 | 1 | B.1.565 | 0.00081 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 1 | 1 | B.1.627 | 0.00202 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 1 | 1 | B.1.630 | 0.005236 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 1 | 1 | B.1.93 | 0.000934 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 1 | 1 | B.3 | 0.000831 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 1 | 1 | P.1.2 | 0.001156 |
ORF1ab/nsp14A2-B | 483 | V483V | gtC | gtT | 1 | 1 | Q.6 | 0.006623 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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