CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp14A2-B | 48 | D48D | D5973D | syn | gaC | gaT | 1908 | 1908 | 1 | 18181-18183 |
ORF1ab/nsp14A2-B | 48 | D48N | D5973N | nonsyn | Gac | Aac | 505 | 505 | 1 | 18181-18183 |
ORF1ab/nsp14A2-B | 48 | D48G | D5973G | nonsyn | gAc | gGc | 110 | 110 | 1 | 18181-18183 |
ORF1ab/nsp14A2-B | 48 | D48Y | D5973Y | nonsyn | Gac | Tac | 58 | 58 | 1 | 18181-18183 |
ORF1ab/nsp14A2-B | 48 | D48del | D5973del | del | GAC | --- | 22 | 22 | 1 | 18181-18183 |
ORF1ab/nsp14A2-B | 48 | D48E | D5973E | nonsyn | gaC | gaA | 18 | 15 | 0.833333 | 18181-18183 |
ORF1ab/nsp14A2-B | 48 | D48E | D5973E | nonsyn | gaC | gaG | 18 | 3 | 0.166667 | 18181-18183 |
ORF1ab/nsp14A2-B | 48 | D48A | D5973A | nonsyn | gAc | gCc | 8 | 7 | 0.875 | 18181-18183 |
ORF1ab/nsp14A2-B | 48 | D48A | D5973A | nonsyn | gAC | gCT | 8 | 1 | 0.125 | 18181-18183 |
ORF1ab/nsp14A2-B | 48 | D48V | D5973V | nonsyn | gAc | gTc | 3 | 3 | 1 | 18181-18183 |
ORF1ab/nsp14A2-B | 48 | D48T | D5973T | nonsyn | GAC | ACA | 2 | 2 | 1 | 18181-18183 |
ORF1ab/nsp14A2-B | 48 | D48H | D5973H | nonsyn | Gac | Cac | 2 | 2 | 1 | 18181-18183 |
ORF1ab/nsp14A2-B | 48 | D48del2 | D5973del2 | del | gAC | g-- | 1 | 1 | 1 | 18181-18183 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp14A2-B | 48 | D48D | gaC | gaT | 1908 | 1908 | All | 0.000365 |
ORF1ab/nsp14A2-B | 48 | D48N | Gac | Aac | 505 | 505 | All | 0.000097 |
ORF1ab/nsp14A2-B | 48 | D48D | gaC | gaT | 340 | 340 | B.1.258.17 | 0.03535 |
ORF1ab/nsp14A2-B | 48 | D48D | gaC | gaT | 337 | 337 | AY.4.5 | 0.036225 |
ORF1ab/nsp14A2-B | 48 | D48D | gaC | gaT | 337 | 337 | B.1.1.7 | 0.000302 |
ORF1ab/nsp14A2-B | 48 | D48N | Gac | Aac | 251 | 251 | A.21 | 0.695291 |
ORF1ab/nsp14A2-B | 48 | D48D | gaC | gaT | 182 | 182 | B.1.1.204 | 0.553191 |
ORF1ab/nsp14A2-B | 48 | D48D | gaC | gaT | 167 | 167 | AY.4 | 0.00026 |
ORF1ab/nsp14A2-B | 48 | D48G | gAc | gGc | 110 | 110 | All | 0.000021 |
ORF1ab/nsp14A2-B | 48 | D48D | gaC | gaT | 66 | 66 | B.1.556 | 0.496241 |
ORF1ab/nsp14A2-B | 48 | D48N | Gac | Aac | 61 | 61 | B.1.1.7 | 0.000055 |
ORF1ab/nsp14A2-B | 48 | D48Y | Gac | Tac | 58 | 58 | All | 0.000011 |
ORF1ab/nsp14A2-B | 48 | D48D | gaC | gaT | 58 | 58 | B.1.617.2 | 0.000218 |
ORF1ab/nsp14A2-B | 48 | D48D | gaC | gaT | 54 | 54 | AY.42 | 0.002172 |
ORF1ab/nsp14A2-B | 48 | D48N | Gac | Aac | 52 | 52 | B.1.2 | 0.000458 |
ORF1ab/nsp14A2-B | 48 | D48G | gAc | gGc | 50 | 50 | B.1.429 | 0.001176 |
ORF1ab/nsp14A2-B | 48 | D48D | gaC | gaT | 34 | 34 | AY.3 | 0.000338 |
ORF1ab/nsp14A2-B | 48 | D48D | gaC | gaT | 33 | 33 | AY.75 | 0.001849 |
ORF1ab/nsp14A2-B | 48 | D48D | gaC | gaT | 33 | 33 | B.1 | 0.000302 |
ORF1ab/nsp14A2-B | 48 | D48G | gAc | gGc | 27 | 27 | B.1.234 | 0.003562 |
ORF1ab/nsp14A2-B | 48 | D48Y | Gac | Tac | 25 | 25 | B.1.1.7 | 0.000022 |
ORF1ab/nsp14A2-B | 48 | D48D | gaC | gaT | 23 | 23 | B.1.2 | 0.000203 |
ORF1ab/nsp14A2-B | 48 | D48del | GAC | --- | 22 | 22 | All | 0.000004 |
ORF1ab/nsp14A2-B | 48 | D48E | gaC | gaA | 15 | 18 | All | 0.000003 |
ORF1ab/nsp14A2-B | 48 | D48E | gaC | gaG | 3 | 18 | All | 0.000001 |
ORF1ab/nsp14A2-B | 48 | D48D | gaC | gaT | 15 | 15 | AY.43 | 0.000066 |
ORF1ab/nsp14A2-B | 48 | D48D | gaC | gaT | 15 | 15 | AY.44 | 0.000091 |
ORF1ab/nsp14A2-B | 48 | D48N | Gac | Aac | 14 | 14 | AY.4 | 0.000022 |
ORF1ab/nsp14A2-B | 48 | D48D | gaC | gaT | 11 | 11 | AY.103 | 0.000068 |
ORF1ab/nsp14A2-B | 48 | D48D | gaC | gaT | 11 | 11 | AY.25 | 0.000066 |
ORF1ab/nsp14A2-B | 48 | D48D | gaC | gaT | 10 | 10 | AY.121 | 0.001353 |
ORF1ab/nsp14A2-B | 48 | D48N | Gac | Aac | 10 | 10 | B.1.1.519 | 0.000397 |
ORF1ab/nsp14A2-B | 48 | D48N | Gac | Aac | 10 | 10 | B.1.617.2 | 0.000038 |
ORF1ab/nsp14A2-B | 48 | D48N | Gac | Aac | 10 | 10 | P.1 | 0.000158 |
ORF1ab/nsp14A2-B | 48 | D48D | gaC | gaT | 9 | 9 | B.1.1.519 | 0.000357 |
ORF1ab/nsp14A2-B | 48 | D48A | gAc | gCc | 7 | 8 | All | 0.000001 |
ORF1ab/nsp14A2-B | 48 | D48A | gAC | gCT | 1 | 8 | All | 0 |
ORF1ab/nsp14A2-B | 48 | D48del | GAC | --- | 8 | 8 | B.1.1.7 | 0.000007 |
ORF1ab/nsp14A2-B | 48 | D48D | gaC | gaT | 8 | 8 | B.1.177.56 | 0.00534 |
ORF1ab/nsp14A2-B | 48 | D48D | gaC | gaT | 8 | 8 | B.1.243 | 0.000557 |
ORF1ab/nsp14A2-B | 48 | D48N | Gac | Aac | 8 | 8 | P.1.14 | 0.000382 |
ORF1ab/nsp14A2-B | 48 | D48G | gAc | gGc | 7 | 7 | AY.25 | 0.000042 |
ORF1ab/nsp14A2-B | 48 | D48N | Gac | Aac | 7 | 7 | AY.33 | 0.000467 |
ORF1ab/nsp14A2-B | 48 | D48D | gaC | gaT | 7 | 7 | B.1.258 | 0.000466 |
ORF1ab/nsp14A2-B | 48 | D48D | gaC | gaT | 6 | 6 | AY.4.4 | 0.002455 |
ORF1ab/nsp14A2-B | 48 | D48D | gaC | gaT | 6 | 6 | AY.58 | 0.005445 |
ORF1ab/nsp14A2-B | 48 | D48D | gaC | gaT | 6 | 6 | B.1.177 | 0.000079 |
ORF1ab/nsp14A2-B | 48 | D48D | gaC | gaT | 6 | 6 | B.1.351 | 0.000178 |
ORF1ab/nsp14A2-B | 48 | D48D | gaC | gaT | 5 | 5 | AY.120 | 0.000186 |
ORF1ab/nsp14A2-B | 48 | D48D | gaC | gaT | 5 | 5 | AY.20 | 0.000194 |
ORF1ab/nsp14A2-B | 48 | D48N | Gac | Aac | 5 | 5 | AY.44 | 0.00003 |
ORF1ab/nsp14A2-B | 48 | D48D | gaC | gaT | 5 | 5 | AY.46.6 | 0.000361 |
ORF1ab/nsp14A2-B | 48 | D48N | Gac | Aac | 5 | 5 | B.1.142 | 0.014493 |
ORF1ab/nsp14A2-B | 48 | D48N | Gac | Aac | 5 | 5 | B.1.160 | 0.000156 |
ORF1ab/nsp14A2-B | 48 | D48G | gAc | gGc | 5 | 5 | B.1.160 | 0.000156 |
ORF1ab/nsp14A2-B | 48 | D48D | gaC | gaT | 4 | 4 | AT.1 | 0.020513 |
ORF1ab/nsp14A2-B | 48 | D48D | gaC | gaT | 4 | 4 | AY.102 | 0.000106 |
ORF1ab/nsp14A2-B | 48 | D48N | Gac | Aac | 4 | 4 | AY.103 | 0.000025 |
ORF1ab/nsp14A2-B | 48 | D48D | gaC | gaT | 4 | 4 | AY.29 | 0.000063 |
ORF1ab/nsp14A2-B | 48 | D48D | gaC | gaT | 4 | 4 | AY.33 | 0.000267 |
ORF1ab/nsp14A2-B | 48 | D48D | gaC | gaT | 4 | 4 | AY.39 | 0.000099 |
ORF1ab/nsp14A2-B | 48 | D48D | gaC | gaT | 4 | 4 | AY.99.2 | 0.000369 |
ORF1ab/nsp14A2-B | 48 | D48Y | Gac | Tac | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp14A2-B | 48 | D48G | gAc | gGc | 4 | 4 | B.1.177.83 | 0.005926 |
ORF1ab/nsp14A2-B | 48 | D48E | gaC | gaA | 4 | 4 | B.1.258 | 0.000266 |
ORF1ab/nsp14A2-B | 48 | D48D | gaC | gaT | 4 | 4 | B.1.429 | 0.000094 |
ORF1ab/nsp14A2-B | 48 | D48D | gaC | gaT | 4 | 4 | B.1.466.1 | 0.028777 |
ORF1ab/nsp14A2-B | 48 | D48D | gaC | gaT | 4 | 4 | B.1.526 | 0.000094 |
ORF1ab/nsp14A2-B | 48 | D48D | gaC | gaT | 3 | 3 | A | 0.001161 |
ORF1ab/nsp14A2-B | 48 | D48V | gAc | gTc | 3 | 3 | All | 0.000001 |
ORF1ab/nsp14A2-B | 48 | D48D | gaC | gaT | 3 | 3 | AY.117 | 0.000254 |
ORF1ab/nsp14A2-B | 48 | D48N | Gac | Aac | 3 | 3 | AY.23 | 0.000209 |
ORF1ab/nsp14A2-B | 48 | D48E | gaC | gaG | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp14A2-B | 48 | D48G | gAc | gGc | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp14A2-B | 48 | D48D | gaC | gaT | 3 | 3 | AY.61 | 0.000314 |
ORF1ab/nsp14A2-B | 48 | D48N | Gac | Aac | 3 | 3 | B | 0.000383 |
ORF1ab/nsp14A2-B | 48 | D48N | Gac | Aac | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp14A2-B | 48 | D48N | Gac | Aac | 3 | 3 | B.1.1.317 | 0.001235 |
ORF1ab/nsp14A2-B | 48 | D48D | gaC | gaT | 3 | 3 | B.1.499 | 0.003151 |
ORF1ab/nsp14A2-B | 48 | D48D | gaC | gaT | 3 | 3 | P.1 | 0.000047 |
ORF1ab/nsp14A2-B | 48 | D48T | GAC | ACA | 2 | 2 | 0.111111 | |
ORF1ab/nsp14A2-B | 48 | D48N | Gac | Aac | 2 | 2 | A | 0.000774 |
ORF1ab/nsp14A2-B | 48 | D48T | GAC | ACA | 2 | 2 | All | 0 |
ORF1ab/nsp14A2-B | 48 | D48H | Gac | Cac | 2 | 2 | All | 0 |
ORF1ab/nsp14A2-B | 48 | D48E | gaC | gaA | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp14A2-B | 48 | D48Y | Gac | Tac | 2 | 2 | AY.116.1 | 0.000623 |
ORF1ab/nsp14A2-B | 48 | D48E | gaC | gaA | 2 | 2 | AY.121 | 0.000271 |
ORF1ab/nsp14A2-B | 48 | D48del | GAC | --- | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp14A2-B | 48 | D48A | gAc | gCc | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp14A2-B | 48 | D48Y | Gac | Tac | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp14A2-B | 48 | D48del | GAC | --- | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp14A2-B | 48 | D48D | gaC | gaT | 2 | 2 | AY.46.4 | 0.000329 |
ORF1ab/nsp14A2-B | 48 | D48N | Gac | Aac | 2 | 2 | AY.54 | 0.000191 |
ORF1ab/nsp14A2-B | 48 | D48D | gaC | gaT | 2 | 2 | AY.9.1 | 0.000167 |
ORF1ab/nsp14A2-B | 48 | D48N | Gac | Aac | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp14A2-B | 48 | D48Y | Gac | Tac | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp14A2-B | 48 | D48D | gaC | gaT | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp14A2-B | 48 | D48N | Gac | Aac | 2 | 2 | B.1.1.344 | 0.021505 |
ORF1ab/nsp14A2-B | 48 | D48Y | Gac | Tac | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp14A2-B | 48 | D48G | gAc | gGc | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp14A2-B | 48 | D48E | gaC | gaA | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp14A2-B | 48 | D48N | Gac | Aac | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp14A2-B | 48 | D48N | Gac | Aac | 2 | 2 | B.1.36 | 0.000292 |
ORF1ab/nsp14A2-B | 48 | D48N | Gac | Aac | 2 | 2 | B.1.36.27 | 0.001527 |
ORF1ab/nsp14A2-B | 48 | D48V | gAc | gTc | 2 | 2 | B.1.400 | 0.000858 |
ORF1ab/nsp14A2-B | 48 | D48D | gaC | gaT | 2 | 2 | B.1.428 | 0.002041 |
ORF1ab/nsp14A2-B | 48 | D48D | gaC | gaT | 2 | 2 | B.1.462 | 0.014493 |
ORF1ab/nsp14A2-B | 48 | D48D | gaC | gaT | 2 | 2 | B.1.466.2 | 0.000782 |
ORF1ab/nsp14A2-B | 48 | D48N | Gac | Aac | 2 | 2 | B.1.524 | 0.002813 |
ORF1ab/nsp14A2-B | 48 | D48N | Gac | Aac | 2 | 2 | B.1.575 | 0.000607 |
ORF1ab/nsp14A2-B | 48 | D48N | Gac | Aac | 2 | 2 | B.1.596 | 0.000174 |
ORF1ab/nsp14A2-B | 48 | D48Y | Gac | Tac | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp14A2-B | 48 | D48N | Gac | Aac | 2 | 2 | B.40 | 0.000729 |
ORF1ab/nsp14A2-B | 48 | D48Y | Gac | Tac | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp14A2-B | 48 | D48N | Gac | Aac | 2 | 2 | P.1.15 | 0.000465 |
ORF1ab/nsp14A2-B | 48 | D48D | gaC | gaT | 2 | 2 | P.1.7 | 0.000639 |
ORF1ab/nsp14A2-B | 48 | D48D | gaC | gaT | 2 | 2 | Q.1 | 0.000253 |
ORF1ab/nsp14A2-B | 48 | D48Y | Gac | Tac | 1 | 1 | 0.055556 | |
ORF1ab/nsp14A2-B | 48 | D48N | Gac | Aac | 1 | 1 | AL.1 | 0.012987 |
ORF1ab/nsp14A2-B | 48 | D48del2 | gAC | g-- | 1 | 1 | All | 0 |
ORF1ab/nsp14A2-B | 48 | D48D | gaC | gaT | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp14A2-B | 48 | D48Y | Gac | Tac | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp14A2-B | 48 | D48G | gAc | gGc | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp14A2-B | 48 | D48D | gaC | gaT | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp14A2-B | 48 | D48D | gaC | gaT | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp14A2-B | 48 | D48D | gaC | gaT | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp14A2-B | 48 | D48G | gAc | gGc | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp14A2-B | 48 | D48Y | Gac | Tac | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp14A2-B | 48 | D48Y | Gac | Tac | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp14A2-B | 48 | D48D | gaC | gaT | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp14A2-B | 48 | D48Y | Gac | Tac | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp14A2-B | 48 | D48N | Gac | Aac | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp14A2-B | 48 | D48D | gaC | gaT | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp14A2-B | 48 | D48del | GAC | --- | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp14A2-B | 48 | D48N | Gac | Aac | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp14A2-B | 48 | D48D | gaC | gaT | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp14A2-B | 48 | D48del | GAC | --- | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp14A2-B | 48 | D48D | gaC | gaT | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp14A2-B | 48 | D48N | Gac | Aac | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp14A2-B | 48 | D48G | gAc | gGc | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp14A2-B | 48 | D48A | gAC | gCT | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp14A2-B | 48 | D48N | Gac | Aac | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp14A2-B | 48 | D48E | gaC | gaA | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp14A2-B | 48 | D48Y | Gac | Tac | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp14A2-B | 48 | D48N | Gac | Aac | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp14A2-B | 48 | D48N | Gac | Aac | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp14A2-B | 48 | D48E | gaC | gaA | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp14A2-B | 48 | D48D | gaC | gaT | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp14A2-B | 48 | D48A | gAc | gCc | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp14A2-B | 48 | D48D | gaC | gaT | 1 | 1 | AY.48 | 0.000465 |
ORF1ab/nsp14A2-B | 48 | D48D | gaC | gaT | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp14A2-B | 48 | D48N | Gac | Aac | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp14A2-B | 48 | D48D | gaC | gaT | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp14A2-B | 48 | D48Y | Gac | Tac | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp14A2-B | 48 | D48D | gaC | gaT | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp14A2-B | 48 | D48D | gaC | gaT | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp14A2-B | 48 | D48D | gaC | gaT | 1 | 1 | AY.64 | 0.000595 |
ORF1ab/nsp14A2-B | 48 | D48del | GAC | --- | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp14A2-B | 48 | D48D | gaC | gaT | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp14A2-B | 48 | D48D | gaC | gaT | 1 | 1 | AY.83 | 0.001724 |
ORF1ab/nsp14A2-B | 48 | D48Y | Gac | Tac | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp14A2-B | 48 | D48N | Gac | Aac | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp14A2-B | 48 | D48D | gaC | gaT | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp14A2-B | 48 | D48N | Gac | Aac | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp14A2-B | 48 | D48D | gaC | gaT | 1 | 1 | AY.94 | 0.000443 |
ORF1ab/nsp14A2-B | 48 | D48N | Gac | Aac | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp14A2-B | 48 | D48G | gAc | gGc | 1 | 1 | B | 0.000128 |
ORF1ab/nsp14A2-B | 48 | D48G | gAc | gGc | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp14A2-B | 48 | D48H | Gac | Cac | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp14A2-B | 48 | D48del | GAC | --- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp14A2-B | 48 | D48E | gaC | gaA | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp14A2-B | 48 | D48del | GAC | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp14A2-B | 48 | D48E | gaC | gaA | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp14A2-B | 48 | D48D | gaC | gaT | 1 | 1 | B.1.1.133 | 0.008475 |
ORF1ab/nsp14A2-B | 48 | D48D | gaC | gaT | 1 | 1 | B.1.1.135 | 0.004695 |
ORF1ab/nsp14A2-B | 48 | D48D | gaC | gaT | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp14A2-B | 48 | D48N | Gac | Aac | 1 | 1 | B.1.1.255 | 0.00303 |
ORF1ab/nsp14A2-B | 48 | D48A | gAc | gCc | 1 | 1 | B.1.1.279 | 0.001121 |
ORF1ab/nsp14A2-B | 48 | D48D | gaC | gaT | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp14A2-B | 48 | D48Y | Gac | Tac | 1 | 1 | B.1.1.286 | 0.002899 |
ORF1ab/nsp14A2-B | 48 | D48D | gaC | gaT | 1 | 1 | B.1.1.291 | 0.000742 |
ORF1ab/nsp14A2-B | 48 | D48D | gaC | gaT | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp14A2-B | 48 | D48Y | Gac | Tac | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp14A2-B | 48 | D48D | gaC | gaT | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp14A2-B | 48 | D48G | gAc | gGc | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp14A2-B | 48 | D48N | Gac | Aac | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp14A2-B | 48 | D48A | gAc | gCc | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp14A2-B | 48 | D48D | gaC | gaT | 1 | 1 | B.1.139 | 0.000733 |
ORF1ab/nsp14A2-B | 48 | D48D | gaC | gaT | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp14A2-B | 48 | D48del | GAC | --- | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp14A2-B | 48 | D48Y | Gac | Tac | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp14A2-B | 48 | D48G | gAc | gGc | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp14A2-B | 48 | D48E | gaC | gaA | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp14A2-B | 48 | D48N | Gac | Aac | 1 | 1 | B.1.177.45 | 0.000381 |
ORF1ab/nsp14A2-B | 48 | D48G | gAc | gGc | 1 | 1 | B.1.177.62 | 0.001192 |
ORF1ab/nsp14A2-B | 48 | D48del | GAC | --- | 1 | 1 | B.1.177.68 | 0.015152 |
ORF1ab/nsp14A2-B | 48 | D48N | Gac | Aac | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp14A2-B | 48 | D48D | gaC | gaT | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp14A2-B | 48 | D48Y | Gac | Tac | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp14A2-B | 48 | D48D | gaC | gaT | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp14A2-B | 48 | D48N | Gac | Aac | 1 | 1 | B.1.177.9 | 0.001332 |
ORF1ab/nsp14A2-B | 48 | D48G | gAc | gGc | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp14A2-B | 48 | D48N | Gac | Aac | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp14A2-B | 48 | D48D | gaC | gaT | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp14A2-B | 48 | D48A | gAc | gCc | 1 | 1 | B.1.237 | 0.004975 |
ORF1ab/nsp14A2-B | 48 | D48A | gAc | gCc | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp14A2-B | 48 | D48V | gAc | gTc | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp14A2-B | 48 | D48del2 | gAC | g-- | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp14A2-B | 48 | D48N | Gac | Aac | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp14A2-B | 48 | D48D | gaC | gaT | 1 | 1 | B.1.258.4 | 0.003448 |
ORF1ab/nsp14A2-B | 48 | D48G | gAc | gGc | 1 | 1 | B.1.260 | 0.003344 |
ORF1ab/nsp14A2-B | 48 | D48D | gaC | gaT | 1 | 1 | B.1.349 | 0.000715 |
ORF1ab/nsp14A2-B | 48 | D48N | Gac | Aac | 1 | 1 | B.1.351.3 | 0.000876 |
ORF1ab/nsp14A2-B | 48 | D48N | Gac | Aac | 1 | 1 | B.1.36.26 | 0.002857 |
ORF1ab/nsp14A2-B | 48 | D48D | gaC | gaT | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp14A2-B | 48 | D48N | Gac | Aac | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp14A2-B | 48 | D48Y | Gac | Tac | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp14A2-B | 48 | D48N | Gac | Aac | 1 | 1 | B.1.456 | 0.003268 |
ORF1ab/nsp14A2-B | 48 | D48Y | Gac | Tac | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp14A2-B | 48 | D48N | Gac | Aac | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp14A2-B | 48 | D48D | gaC | gaT | 1 | 1 | B.1.551 | 0.00129 |
ORF1ab/nsp14A2-B | 48 | D48del | GAC | --- | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp14A2-B | 48 | D48D | gaC | gaT | 1 | 1 | B.1.565 | 0.00081 |
ORF1ab/nsp14A2-B | 48 | D48del | GAC | --- | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp14A2-B | 48 | D48Y | Gac | Tac | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp14A2-B | 48 | D48D | gaC | gaT | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp14A2-B | 48 | D48D | gaC | gaT | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp14A2-B | 48 | D48D | gaC | gaT | 1 | 1 | B.1.605 | 0.005952 |
ORF1ab/nsp14A2-B | 48 | D48D | gaC | gaT | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp14A2-B | 48 | D48Y | Gac | Tac | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp14A2-B | 48 | D48D | gaC | gaT | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp14A2-B | 48 | D48H | Gac | Cac | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp14A2-B | 48 | D48Y | Gac | Tac | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp14A2-B | 48 | D48D | gaC | gaT | 1 | 1 | B.61 | 0.005747 |
ORF1ab/nsp14A2-B | 48 | D48D | gaC | gaT | 1 | 1 | D.5 | 0.004975 |
ORF1ab/nsp14A2-B | 48 | D48D | gaC | gaT | 1 | 1 | N.4 | 0.004255 |
ORF1ab/nsp14A2-B | 48 | D48G | gAc | gGc | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp14A2-B | 48 | D48del | GAC | --- | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp14A2-B | 48 | D48N | Gac | Aac | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp14A2-B | 48 | D48N | Gac | Aac | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp14A2-B | 48 | D48N | Gac | Aac | 1 | 1 | P.1.2 | 0.001156 |
ORF1ab/nsp14A2-B | 48 | D48G | gAc | gGc | 1 | 1 | Q.4 | 0.000455 |
ORF1ab/nsp14A2-B | 48 | D48N | Gac | Aac | 1 | 1 | Q.8 | 0.000165 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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