CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp14A2-B : CodonNum = 48

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF1ab/nsp14A2-B	48	D48D	D5973D	syn	gaC	gaT	1908	1908	1	18181-18183
ORF1ab/nsp14A2-B	48	D48N	D5973N	nonsyn	Gac	Aac	505	505	1	18181-18183
ORF1ab/nsp14A2-B	48	D48G	D5973G	nonsyn	gAc	gGc	110	110	1	18181-18183
ORF1ab/nsp14A2-B	48	D48Y	D5973Y	nonsyn	Gac	Tac	58	58	1	18181-18183
ORF1ab/nsp14A2-B	48	D48del	D5973del	del	GAC	---	22	22	1	18181-18183
ORF1ab/nsp14A2-B	48	D48E	D5973E	nonsyn	gaC	gaA	18	15	0.833333	18181-18183
ORF1ab/nsp14A2-B	48	D48E	D5973E	nonsyn	gaC	gaG	18	3	0.166667	18181-18183
ORF1ab/nsp14A2-B	48	D48A	D5973A	nonsyn	gAc	gCc	8	7	0.875	18181-18183
ORF1ab/nsp14A2-B	48	D48A	D5973A	nonsyn	gAC	gCT	8	1	0.125	18181-18183
ORF1ab/nsp14A2-B	48	D48V	D5973V	nonsyn	gAc	gTc	3	3	1	18181-18183
ORF1ab/nsp14A2-B	48	D48T	D5973T	nonsyn	GAC	ACA	2	2	1	18181-18183
ORF1ab/nsp14A2-B	48	D48H	D5973H	nonsyn	Gac	Cac	2	2	1	18181-18183
ORF1ab/nsp14A2-B	48	D48del2	D5973del2	del	gAC	g--	1	1	1	18181-18183

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF1ab/nsp14A2-B	48	D48D	gaC	gaT	1908	1908	All	0.000365
ORF1ab/nsp14A2-B	48	D48N	Gac	Aac	505	505	All	0.000097
ORF1ab/nsp14A2-B	48	D48D	gaC	gaT	340	340	B.1.258.17	0.03535
ORF1ab/nsp14A2-B	48	D48D	gaC	gaT	337	337	AY.4.5	0.036225
ORF1ab/nsp14A2-B	48	D48D	gaC	gaT	337	337	B.1.1.7	0.000302
ORF1ab/nsp14A2-B	48	D48N	Gac	Aac	251	251	A.21	0.695291
ORF1ab/nsp14A2-B	48	D48D	gaC	gaT	182	182	B.1.1.204	0.553191
ORF1ab/nsp14A2-B	48	D48D	gaC	gaT	167	167	AY.4	0.00026
ORF1ab/nsp14A2-B	48	D48G	gAc	gGc	110	110	All	0.000021
ORF1ab/nsp14A2-B	48	D48D	gaC	gaT	66	66	B.1.556	0.496241
ORF1ab/nsp14A2-B	48	D48N	Gac	Aac	61	61	B.1.1.7	0.000055
ORF1ab/nsp14A2-B	48	D48Y	Gac	Tac	58	58	All	0.000011
ORF1ab/nsp14A2-B	48	D48D	gaC	gaT	58	58	B.1.617.2	0.000218
ORF1ab/nsp14A2-B	48	D48D	gaC	gaT	54	54	AY.42	0.002172
ORF1ab/nsp14A2-B	48	D48N	Gac	Aac	52	52	B.1.2	0.000458
ORF1ab/nsp14A2-B	48	D48G	gAc	gGc	50	50	B.1.429	0.001176
ORF1ab/nsp14A2-B	48	D48D	gaC	gaT	34	34	AY.3	0.000338
ORF1ab/nsp14A2-B	48	D48D	gaC	gaT	33	33	AY.75	0.001849
ORF1ab/nsp14A2-B	48	D48D	gaC	gaT	33	33	B.1	0.000302
ORF1ab/nsp14A2-B	48	D48G	gAc	gGc	27	27	B.1.234	0.003562
ORF1ab/nsp14A2-B	48	D48Y	Gac	Tac	25	25	B.1.1.7	0.000022
ORF1ab/nsp14A2-B	48	D48D	gaC	gaT	23	23	B.1.2	0.000203
ORF1ab/nsp14A2-B	48	D48del	GAC	---	22	22	All	0.000004
ORF1ab/nsp14A2-B	48	D48E	gaC	gaA	15	18	All	0.000003
ORF1ab/nsp14A2-B	48	D48E	gaC	gaG	3	18	All	0.000001
ORF1ab/nsp14A2-B	48	D48D	gaC	gaT	15	15	AY.43	0.000066
ORF1ab/nsp14A2-B	48	D48D	gaC	gaT	15	15	AY.44	0.000091
ORF1ab/nsp14A2-B	48	D48N	Gac	Aac	14	14	AY.4	0.000022
ORF1ab/nsp14A2-B	48	D48D	gaC	gaT	11	11	AY.103	0.000068
ORF1ab/nsp14A2-B	48	D48D	gaC	gaT	11	11	AY.25	0.000066
ORF1ab/nsp14A2-B	48	D48D	gaC	gaT	10	10	AY.121	0.001353
ORF1ab/nsp14A2-B	48	D48N	Gac	Aac	10	10	B.1.1.519	0.000397
ORF1ab/nsp14A2-B	48	D48N	Gac	Aac	10	10	B.1.617.2	0.000038
ORF1ab/nsp14A2-B	48	D48N	Gac	Aac	10	10	P.1	0.000158
ORF1ab/nsp14A2-B	48	D48D	gaC	gaT	9	9	B.1.1.519	0.000357
ORF1ab/nsp14A2-B	48	D48A	gAc	gCc	7	8	All	0.000001
ORF1ab/nsp14A2-B	48	D48A	gAC	gCT	1	8	All	0
ORF1ab/nsp14A2-B	48	D48del	GAC	---	8	8	B.1.1.7	0.000007
ORF1ab/nsp14A2-B	48	D48D	gaC	gaT	8	8	B.1.177.56	0.00534
ORF1ab/nsp14A2-B	48	D48D	gaC	gaT	8	8	B.1.243	0.000557
ORF1ab/nsp14A2-B	48	D48N	Gac	Aac	8	8	P.1.14	0.000382
ORF1ab/nsp14A2-B	48	D48G	gAc	gGc	7	7	AY.25	0.000042
ORF1ab/nsp14A2-B	48	D48N	Gac	Aac	7	7	AY.33	0.000467
ORF1ab/nsp14A2-B	48	D48D	gaC	gaT	7	7	B.1.258	0.000466
ORF1ab/nsp14A2-B	48	D48D	gaC	gaT	6	6	AY.4.4	0.002455
ORF1ab/nsp14A2-B	48	D48D	gaC	gaT	6	6	AY.58	0.005445
ORF1ab/nsp14A2-B	48	D48D	gaC	gaT	6	6	B.1.177	0.000079
ORF1ab/nsp14A2-B	48	D48D	gaC	gaT	6	6	B.1.351	0.000178
ORF1ab/nsp14A2-B	48	D48D	gaC	gaT	5	5	AY.120	0.000186
ORF1ab/nsp14A2-B	48	D48D	gaC	gaT	5	5	AY.20	0.000194
ORF1ab/nsp14A2-B	48	D48N	Gac	Aac	5	5	AY.44	0.00003
ORF1ab/nsp14A2-B	48	D48D	gaC	gaT	5	5	AY.46.6	0.000361
ORF1ab/nsp14A2-B	48	D48N	Gac	Aac	5	5	B.1.142	0.014493
ORF1ab/nsp14A2-B	48	D48N	Gac	Aac	5	5	B.1.160	0.000156
ORF1ab/nsp14A2-B	48	D48G	gAc	gGc	5	5	B.1.160	0.000156
ORF1ab/nsp14A2-B	48	D48D	gaC	gaT	4	4	AT.1	0.020513
ORF1ab/nsp14A2-B	48	D48D	gaC	gaT	4	4	AY.102	0.000106
ORF1ab/nsp14A2-B	48	D48N	Gac	Aac	4	4	AY.103	0.000025
ORF1ab/nsp14A2-B	48	D48D	gaC	gaT	4	4	AY.29	0.000063
ORF1ab/nsp14A2-B	48	D48D	gaC	gaT	4	4	AY.33	0.000267
ORF1ab/nsp14A2-B	48	D48D	gaC	gaT	4	4	AY.39	0.000099
ORF1ab/nsp14A2-B	48	D48D	gaC	gaT	4	4	AY.99.2	0.000369
ORF1ab/nsp14A2-B	48	D48Y	Gac	Tac	4	4	B.1	0.000037
ORF1ab/nsp14A2-B	48	D48G	gAc	gGc	4	4	B.1.177.83	0.005926
ORF1ab/nsp14A2-B	48	D48E	gaC	gaA	4	4	B.1.258	0.000266
ORF1ab/nsp14A2-B	48	D48D	gaC	gaT	4	4	B.1.429	0.000094
ORF1ab/nsp14A2-B	48	D48D	gaC	gaT	4	4	B.1.466.1	0.028777
ORF1ab/nsp14A2-B	48	D48D	gaC	gaT	4	4	B.1.526	0.000094
ORF1ab/nsp14A2-B	48	D48D	gaC	gaT	3	3	A	0.001161
ORF1ab/nsp14A2-B	48	D48V	gAc	gTc	3	3	All	0.000001
ORF1ab/nsp14A2-B	48	D48D	gaC	gaT	3	3	AY.117	0.000254
ORF1ab/nsp14A2-B	48	D48N	Gac	Aac	3	3	AY.23	0.000209
ORF1ab/nsp14A2-B	48	D48E	gaC	gaG	3	3	AY.4	0.000005
ORF1ab/nsp14A2-B	48	D48G	gAc	gGc	3	3	AY.4	0.000005
ORF1ab/nsp14A2-B	48	D48D	gaC	gaT	3	3	AY.61	0.000314
ORF1ab/nsp14A2-B	48	D48N	Gac	Aac	3	3	B	0.000383
ORF1ab/nsp14A2-B	48	D48N	Gac	Aac	3	3	B.1.1	0.000054
ORF1ab/nsp14A2-B	48	D48N	Gac	Aac	3	3	B.1.1.317	0.001235
ORF1ab/nsp14A2-B	48	D48D	gaC	gaT	3	3	B.1.499	0.003151
ORF1ab/nsp14A2-B	48	D48D	gaC	gaT	3	3	P.1	0.000047
ORF1ab/nsp14A2-B	48	D48T	GAC	ACA	2	2		0.111111
ORF1ab/nsp14A2-B	48	D48N	Gac	Aac	2	2	A	0.000774
ORF1ab/nsp14A2-B	48	D48T	GAC	ACA	2	2	All	0
ORF1ab/nsp14A2-B	48	D48H	Gac	Cac	2	2	All	0
ORF1ab/nsp14A2-B	48	D48E	gaC	gaA	2	2	AY.103	0.000012
ORF1ab/nsp14A2-B	48	D48Y	Gac	Tac	2	2	AY.116.1	0.000623
ORF1ab/nsp14A2-B	48	D48E	gaC	gaA	2	2	AY.121	0.000271
ORF1ab/nsp14A2-B	48	D48del	GAC	---	2	2	AY.25	0.000012
ORF1ab/nsp14A2-B	48	D48A	gAc	gCc	2	2	AY.4	0.000003
ORF1ab/nsp14A2-B	48	D48Y	Gac	Tac	2	2	AY.4	0.000003
ORF1ab/nsp14A2-B	48	D48del	GAC	---	2	2	AY.4.5	0.000215
ORF1ab/nsp14A2-B	48	D48D	gaC	gaT	2	2	AY.46.4	0.000329
ORF1ab/nsp14A2-B	48	D48N	Gac	Aac	2	2	AY.54	0.000191
ORF1ab/nsp14A2-B	48	D48D	gaC	gaT	2	2	AY.9.1	0.000167
ORF1ab/nsp14A2-B	48	D48N	Gac	Aac	2	2	B.1	0.000018
ORF1ab/nsp14A2-B	48	D48Y	Gac	Tac	2	2	B.1.1	0.000036
ORF1ab/nsp14A2-B	48	D48D	gaC	gaT	2	2	B.1.1	0.000036
ORF1ab/nsp14A2-B	48	D48N	Gac	Aac	2	2	B.1.1.344	0.021505
ORF1ab/nsp14A2-B	48	D48Y	Gac	Tac	2	2	B.1.1.519	0.000079
ORF1ab/nsp14A2-B	48	D48G	gAc	gGc	2	2	B.1.1.7	0.000002
ORF1ab/nsp14A2-B	48	D48E	gaC	gaA	2	2	B.1.1.7	0.000002
ORF1ab/nsp14A2-B	48	D48N	Gac	Aac	2	2	B.1.177	0.000026
ORF1ab/nsp14A2-B	48	D48N	Gac	Aac	2	2	B.1.36	0.000292
ORF1ab/nsp14A2-B	48	D48N	Gac	Aac	2	2	B.1.36.27	0.001527
ORF1ab/nsp14A2-B	48	D48V	gAc	gTc	2	2	B.1.400	0.000858
ORF1ab/nsp14A2-B	48	D48D	gaC	gaT	2	2	B.1.428	0.002041
ORF1ab/nsp14A2-B	48	D48D	gaC	gaT	2	2	B.1.462	0.014493
ORF1ab/nsp14A2-B	48	D48D	gaC	gaT	2	2	B.1.466.2	0.000782
ORF1ab/nsp14A2-B	48	D48N	Gac	Aac	2	2	B.1.524	0.002813
ORF1ab/nsp14A2-B	48	D48N	Gac	Aac	2	2	B.1.575	0.000607
ORF1ab/nsp14A2-B	48	D48N	Gac	Aac	2	2	B.1.596	0.000174
ORF1ab/nsp14A2-B	48	D48Y	Gac	Tac	2	2	B.1.617.2	0.000008
ORF1ab/nsp14A2-B	48	D48N	Gac	Aac	2	2	B.40	0.000729
ORF1ab/nsp14A2-B	48	D48Y	Gac	Tac	2	2	D.2	0.00015
ORF1ab/nsp14A2-B	48	D48N	Gac	Aac	2	2	P.1.15	0.000465
ORF1ab/nsp14A2-B	48	D48D	gaC	gaT	2	2	P.1.7	0.000639
ORF1ab/nsp14A2-B	48	D48D	gaC	gaT	2	2	Q.1	0.000253
ORF1ab/nsp14A2-B	48	D48Y	Gac	Tac	1	1		0.055556
ORF1ab/nsp14A2-B	48	D48N	Gac	Aac	1	1	AL.1	0.012987
ORF1ab/nsp14A2-B	48	D48del2	gAC	g--	1	1	All	0
ORF1ab/nsp14A2-B	48	D48D	gaC	gaT	1	1	AY.101	0.00049
ORF1ab/nsp14A2-B	48	D48Y	Gac	Tac	1	1	AY.102	0.000027
ORF1ab/nsp14A2-B	48	D48G	gAc	gGc	1	1	AY.103	0.000006
ORF1ab/nsp14A2-B	48	D48D	gaC	gaT	1	1	AY.113	0.000142
ORF1ab/nsp14A2-B	48	D48D	gaC	gaT	1	1	AY.118	0.000063
ORF1ab/nsp14A2-B	48	D48D	gaC	gaT	1	1	AY.119	0.000035
ORF1ab/nsp14A2-B	48	D48G	gAc	gGc	1	1	AY.12	0.000316
ORF1ab/nsp14A2-B	48	D48Y	Gac	Tac	1	1	AY.121	0.000135
ORF1ab/nsp14A2-B	48	D48Y	Gac	Tac	1	1	AY.14	0.000088
ORF1ab/nsp14A2-B	48	D48D	gaC	gaT	1	1	AY.19	0.00114
ORF1ab/nsp14A2-B	48	D48Y	Gac	Tac	1	1	AY.25	0.000006
ORF1ab/nsp14A2-B	48	D48N	Gac	Aac	1	1	AY.25	0.000006
ORF1ab/nsp14A2-B	48	D48D	gaC	gaT	1	1	AY.26	0.000028
ORF1ab/nsp14A2-B	48	D48del	GAC	---	1	1	AY.36	0.000148
ORF1ab/nsp14A2-B	48	D48N	Gac	Aac	1	1	AY.39	0.000025
ORF1ab/nsp14A2-B	48	D48D	gaC	gaT	1	1	AY.39.1	0.00004
ORF1ab/nsp14A2-B	48	D48del	GAC	---	1	1	AY.4	0.000002
ORF1ab/nsp14A2-B	48	D48D	gaC	gaT	1	1	AY.4.2	0.000022
ORF1ab/nsp14A2-B	48	D48N	Gac	Aac	1	1	AY.42	0.00004
ORF1ab/nsp14A2-B	48	D48G	gAc	gGc	1	1	AY.43	0.000004
ORF1ab/nsp14A2-B	48	D48A	gAC	gCT	1	1	AY.43	0.000004
ORF1ab/nsp14A2-B	48	D48N	Gac	Aac	1	1	AY.43	0.000004
ORF1ab/nsp14A2-B	48	D48E	gaC	gaA	1	1	AY.44	0.000006
ORF1ab/nsp14A2-B	48	D48Y	Gac	Tac	1	1	AY.44	0.000006
ORF1ab/nsp14A2-B	48	D48N	Gac	Aac	1	1	AY.46.4	0.000165
ORF1ab/nsp14A2-B	48	D48N	Gac	Aac	1	1	AY.47	0.000031
ORF1ab/nsp14A2-B	48	D48E	gaC	gaA	1	1	AY.47	0.000031
ORF1ab/nsp14A2-B	48	D48D	gaC	gaT	1	1	AY.47	0.000031
ORF1ab/nsp14A2-B	48	D48A	gAc	gCc	1	1	AY.47	0.000031
ORF1ab/nsp14A2-B	48	D48D	gaC	gaT	1	1	AY.48	0.000465
ORF1ab/nsp14A2-B	48	D48D	gaC	gaT	1	1	AY.5	0.000021
ORF1ab/nsp14A2-B	48	D48N	Gac	Aac	1	1	AY.5	0.000021
ORF1ab/nsp14A2-B	48	D48D	gaC	gaT	1	1	AY.5.4	0.000277
ORF1ab/nsp14A2-B	48	D48Y	Gac	Tac	1	1	AY.55	0.000917
ORF1ab/nsp14A2-B	48	D48D	gaC	gaT	1	1	AY.6	0.000041
ORF1ab/nsp14A2-B	48	D48D	gaC	gaT	1	1	AY.62	0.000436
ORF1ab/nsp14A2-B	48	D48D	gaC	gaT	1	1	AY.64	0.000595
ORF1ab/nsp14A2-B	48	D48del	GAC	---	1	1	AY.75	0.000056
ORF1ab/nsp14A2-B	48	D48D	gaC	gaT	1	1	AY.75.1	0.00018
ORF1ab/nsp14A2-B	48	D48D	gaC	gaT	1	1	AY.83	0.001724
ORF1ab/nsp14A2-B	48	D48Y	Gac	Tac	1	1	AY.9.1	0.000084
ORF1ab/nsp14A2-B	48	D48N	Gac	Aac	1	1	AY.9.2	0.000037
ORF1ab/nsp14A2-B	48	D48D	gaC	gaT	1	1	AY.91	0.00073
ORF1ab/nsp14A2-B	48	D48N	Gac	Aac	1	1	AY.92	0.000287
ORF1ab/nsp14A2-B	48	D48D	gaC	gaT	1	1	AY.94	0.000443
ORF1ab/nsp14A2-B	48	D48N	Gac	Aac	1	1	AY.99.2	0.000092
ORF1ab/nsp14A2-B	48	D48G	gAc	gGc	1	1	B	0.000128
ORF1ab/nsp14A2-B	48	D48G	gAc	gGc	1	1	B.1	0.000009
ORF1ab/nsp14A2-B	48	D48H	Gac	Cac	1	1	B.1	0.000009
ORF1ab/nsp14A2-B	48	D48del	GAC	---	1	1	B.1	0.000009
ORF1ab/nsp14A2-B	48	D48E	gaC	gaA	1	1	B.1	0.000009
ORF1ab/nsp14A2-B	48	D48del	GAC	---	1	1	B.1.1	0.000018
ORF1ab/nsp14A2-B	48	D48E	gaC	gaA	1	1	B.1.1	0.000018
ORF1ab/nsp14A2-B	48	D48D	gaC	gaT	1	1	B.1.1.133	0.008475
ORF1ab/nsp14A2-B	48	D48D	gaC	gaT	1	1	B.1.1.135	0.004695
ORF1ab/nsp14A2-B	48	D48D	gaC	gaT	1	1	B.1.1.25	0.000569
ORF1ab/nsp14A2-B	48	D48N	Gac	Aac	1	1	B.1.1.255	0.00303
ORF1ab/nsp14A2-B	48	D48A	gAc	gCc	1	1	B.1.1.279	0.001121
ORF1ab/nsp14A2-B	48	D48D	gaC	gaT	1	1	B.1.1.284	0.000107
ORF1ab/nsp14A2-B	48	D48Y	Gac	Tac	1	1	B.1.1.286	0.002899
ORF1ab/nsp14A2-B	48	D48D	gaC	gaT	1	1	B.1.1.291	0.000742
ORF1ab/nsp14A2-B	48	D48D	gaC	gaT	1	1	B.1.1.306	0.000438
ORF1ab/nsp14A2-B	48	D48Y	Gac	Tac	1	1	B.1.1.311	0.000358
ORF1ab/nsp14A2-B	48	D48D	gaC	gaT	1	1	B.1.1.318	0.000302
ORF1ab/nsp14A2-B	48	D48G	gAc	gGc	1	1	B.1.1.519	0.00004
ORF1ab/nsp14A2-B	48	D48N	Gac	Aac	1	1	B.1.1.63	0.000386
ORF1ab/nsp14A2-B	48	D48A	gAc	gCc	1	1	B.1.1.7	0.000001
ORF1ab/nsp14A2-B	48	D48D	gaC	gaT	1	1	B.1.139	0.000733
ORF1ab/nsp14A2-B	48	D48D	gaC	gaT	1	1	B.1.160	0.000031
ORF1ab/nsp14A2-B	48	D48del	GAC	---	1	1	B.1.177	0.000013
ORF1ab/nsp14A2-B	48	D48Y	Gac	Tac	1	1	B.1.177	0.000013
ORF1ab/nsp14A2-B	48	D48G	gAc	gGc	1	1	B.1.177	0.000013
ORF1ab/nsp14A2-B	48	D48E	gaC	gaA	1	1	B.1.177	0.000013
ORF1ab/nsp14A2-B	48	D48N	Gac	Aac	1	1	B.1.177.45	0.000381
ORF1ab/nsp14A2-B	48	D48G	gAc	gGc	1	1	B.1.177.62	0.001192
ORF1ab/nsp14A2-B	48	D48del	GAC	---	1	1	B.1.177.68	0.015152
ORF1ab/nsp14A2-B	48	D48N	Gac	Aac	1	1	B.1.177.7	0.000165
ORF1ab/nsp14A2-B	48	D48D	gaC	gaT	1	1	B.1.177.7	0.000165
ORF1ab/nsp14A2-B	48	D48Y	Gac	Tac	1	1	B.1.177.81	0.000189
ORF1ab/nsp14A2-B	48	D48D	gaC	gaT	1	1	B.1.177.86	0.000183
ORF1ab/nsp14A2-B	48	D48N	Gac	Aac	1	1	B.1.177.9	0.001332
ORF1ab/nsp14A2-B	48	D48G	gAc	gGc	1	1	B.1.2	0.000009
ORF1ab/nsp14A2-B	48	D48N	Gac	Aac	1	1	B.1.221	0.000071
ORF1ab/nsp14A2-B	48	D48D	gaC	gaT	1	1	B.1.221	0.000071
ORF1ab/nsp14A2-B	48	D48A	gAc	gCc	1	1	B.1.237	0.004975
ORF1ab/nsp14A2-B	48	D48A	gAc	gCc	1	1	B.1.258	0.000067
ORF1ab/nsp14A2-B	48	D48V	gAc	gTc	1	1	B.1.258	0.000067
ORF1ab/nsp14A2-B	48	D48del2	gAC	g--	1	1	B.1.258	0.000067
ORF1ab/nsp14A2-B	48	D48N	Gac	Aac	1	1	B.1.258	0.000067
ORF1ab/nsp14A2-B	48	D48D	gaC	gaT	1	1	B.1.258.4	0.003448
ORF1ab/nsp14A2-B	48	D48G	gAc	gGc	1	1	B.1.260	0.003344
ORF1ab/nsp14A2-B	48	D48D	gaC	gaT	1	1	B.1.349	0.000715
ORF1ab/nsp14A2-B	48	D48N	Gac	Aac	1	1	B.1.351.3	0.000876
ORF1ab/nsp14A2-B	48	D48N	Gac	Aac	1	1	B.1.36.26	0.002857
ORF1ab/nsp14A2-B	48	D48D	gaC	gaT	1	1	B.1.396	0.000706
ORF1ab/nsp14A2-B	48	D48N	Gac	Aac	1	1	B.1.427	0.00005
ORF1ab/nsp14A2-B	48	D48Y	Gac	Tac	1	1	B.1.429	0.000024
ORF1ab/nsp14A2-B	48	D48N	Gac	Aac	1	1	B.1.456	0.003268
ORF1ab/nsp14A2-B	48	D48Y	Gac	Tac	1	1	B.1.526	0.000024
ORF1ab/nsp14A2-B	48	D48N	Gac	Aac	1	1	B.1.526	0.000024
ORF1ab/nsp14A2-B	48	D48D	gaC	gaT	1	1	B.1.551	0.00129
ORF1ab/nsp14A2-B	48	D48del	GAC	---	1	1	B.1.561	0.000397
ORF1ab/nsp14A2-B	48	D48D	gaC	gaT	1	1	B.1.565	0.00081
ORF1ab/nsp14A2-B	48	D48del	GAC	---	1	1	B.1.582	0.000491
ORF1ab/nsp14A2-B	48	D48Y	Gac	Tac	1	1	B.1.595	0.000261
ORF1ab/nsp14A2-B	48	D48D	gaC	gaT	1	1	B.1.595	0.000261
ORF1ab/nsp14A2-B	48	D48D	gaC	gaT	1	1	B.1.596	0.000087
ORF1ab/nsp14A2-B	48	D48D	gaC	gaT	1	1	B.1.605	0.005952
ORF1ab/nsp14A2-B	48	D48D	gaC	gaT	1	1	B.1.617.1	0.000129
ORF1ab/nsp14A2-B	48	D48Y	Gac	Tac	1	1	B.1.621	0.000089
ORF1ab/nsp14A2-B	48	D48D	gaC	gaT	1	1	B.1.621	0.000089
ORF1ab/nsp14A2-B	48	D48H	Gac	Cac	1	1	B.1.637	0.000073
ORF1ab/nsp14A2-B	48	D48Y	Gac	Tac	1	1	B.6	0.00091
ORF1ab/nsp14A2-B	48	D48D	gaC	gaT	1	1	B.61	0.005747
ORF1ab/nsp14A2-B	48	D48D	gaC	gaT	1	1	D.5	0.004975
ORF1ab/nsp14A2-B	48	D48D	gaC	gaT	1	1	N.4	0.004255
ORF1ab/nsp14A2-B	48	D48G	gAc	gGc	1	1	P.1	0.000016
ORF1ab/nsp14A2-B	48	D48del	GAC	---	1	1	P.1	0.000016
ORF1ab/nsp14A2-B	48	D48N	Gac	Aac	1	1	P.1.1	0.000318
ORF1ab/nsp14A2-B	48	D48N	Gac	Aac	1	1	P.1.12	0.000484
ORF1ab/nsp14A2-B	48	D48N	Gac	Aac	1	1	P.1.2	0.001156
ORF1ab/nsp14A2-B	48	D48G	gAc	gGc	1	1	Q.4	0.000455
ORF1ab/nsp14A2-B	48	D48N	Gac	Aac	1	1	Q.8	0.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.