CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp14A2-B : CodonNum = 48

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp14A2-B48D48DD5973DsyngaCgaT19081908118181-18183
ORF1ab/nsp14A2-B48D48ND5973NnonsynGacAac505505118181-18183
ORF1ab/nsp14A2-B48D48GD5973GnonsyngAcgGc110110118181-18183
ORF1ab/nsp14A2-B48D48YD5973YnonsynGacTac5858118181-18183
ORF1ab/nsp14A2-B48D48delD5973deldelGAC---2222118181-18183
ORF1ab/nsp14A2-B48D48ED5973EnonsyngaCgaA18150.83333318181-18183
ORF1ab/nsp14A2-B48D48ED5973EnonsyngaCgaG1830.16666718181-18183
ORF1ab/nsp14A2-B48D48AD5973AnonsyngAcgCc870.87518181-18183
ORF1ab/nsp14A2-B48D48AD5973AnonsyngACgCT810.12518181-18183
ORF1ab/nsp14A2-B48D48VD5973VnonsyngAcgTc33118181-18183
ORF1ab/nsp14A2-B48D48TD5973TnonsynGACACA22118181-18183
ORF1ab/nsp14A2-B48D48HD5973HnonsynGacCac22118181-18183
ORF1ab/nsp14A2-B48D48del2D5973del2delgACg--11118181-18183

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp14A2-B48D48DgaCgaT19081908All0.000365
ORF1ab/nsp14A2-B48D48NGacAac505505All0.000097
ORF1ab/nsp14A2-B48D48DgaCgaT340340B.1.258.170.03535
ORF1ab/nsp14A2-B48D48DgaCgaT337337AY.4.50.036225
ORF1ab/nsp14A2-B48D48DgaCgaT337337B.1.1.70.000302
ORF1ab/nsp14A2-B48D48NGacAac251251A.210.695291
ORF1ab/nsp14A2-B48D48DgaCgaT182182B.1.1.2040.553191
ORF1ab/nsp14A2-B48D48DgaCgaT167167AY.40.00026
ORF1ab/nsp14A2-B48D48GgAcgGc110110All0.000021
ORF1ab/nsp14A2-B48D48DgaCgaT6666B.1.5560.496241
ORF1ab/nsp14A2-B48D48NGacAac6161B.1.1.70.000055
ORF1ab/nsp14A2-B48D48YGacTac5858All0.000011
ORF1ab/nsp14A2-B48D48DgaCgaT5858B.1.617.20.000218
ORF1ab/nsp14A2-B48D48DgaCgaT5454AY.420.002172
ORF1ab/nsp14A2-B48D48NGacAac5252B.1.20.000458
ORF1ab/nsp14A2-B48D48GgAcgGc5050B.1.4290.001176
ORF1ab/nsp14A2-B48D48DgaCgaT3434AY.30.000338
ORF1ab/nsp14A2-B48D48DgaCgaT3333AY.750.001849
ORF1ab/nsp14A2-B48D48DgaCgaT3333B.10.000302
ORF1ab/nsp14A2-B48D48GgAcgGc2727B.1.2340.003562
ORF1ab/nsp14A2-B48D48YGacTac2525B.1.1.70.000022
ORF1ab/nsp14A2-B48D48DgaCgaT2323B.1.20.000203
ORF1ab/nsp14A2-B48D48delGAC---2222All0.000004
ORF1ab/nsp14A2-B48D48EgaCgaA1518All0.000003
ORF1ab/nsp14A2-B48D48EgaCgaG318All0.000001
ORF1ab/nsp14A2-B48D48DgaCgaT1515AY.430.000066
ORF1ab/nsp14A2-B48D48DgaCgaT1515AY.440.000091
ORF1ab/nsp14A2-B48D48NGacAac1414AY.40.000022
ORF1ab/nsp14A2-B48D48DgaCgaT1111AY.1030.000068
ORF1ab/nsp14A2-B48D48DgaCgaT1111AY.250.000066
ORF1ab/nsp14A2-B48D48DgaCgaT1010AY.1210.001353
ORF1ab/nsp14A2-B48D48NGacAac1010B.1.1.5190.000397
ORF1ab/nsp14A2-B48D48NGacAac1010B.1.617.20.000038
ORF1ab/nsp14A2-B48D48NGacAac1010P.10.000158
ORF1ab/nsp14A2-B48D48DgaCgaT99B.1.1.5190.000357
ORF1ab/nsp14A2-B48D48AgAcgCc78All0.000001
ORF1ab/nsp14A2-B48D48AgACgCT18All0
ORF1ab/nsp14A2-B48D48delGAC---88B.1.1.70.000007
ORF1ab/nsp14A2-B48D48DgaCgaT88B.1.177.560.00534
ORF1ab/nsp14A2-B48D48DgaCgaT88B.1.2430.000557
ORF1ab/nsp14A2-B48D48NGacAac88P.1.140.000382
ORF1ab/nsp14A2-B48D48GgAcgGc77AY.250.000042
ORF1ab/nsp14A2-B48D48NGacAac77AY.330.000467
ORF1ab/nsp14A2-B48D48DgaCgaT77B.1.2580.000466
ORF1ab/nsp14A2-B48D48DgaCgaT66AY.4.40.002455
ORF1ab/nsp14A2-B48D48DgaCgaT66AY.580.005445
ORF1ab/nsp14A2-B48D48DgaCgaT66B.1.1770.000079
ORF1ab/nsp14A2-B48D48DgaCgaT66B.1.3510.000178
ORF1ab/nsp14A2-B48D48DgaCgaT55AY.1200.000186
ORF1ab/nsp14A2-B48D48DgaCgaT55AY.200.000194
ORF1ab/nsp14A2-B48D48NGacAac55AY.440.00003
ORF1ab/nsp14A2-B48D48DgaCgaT55AY.46.60.000361
ORF1ab/nsp14A2-B48D48NGacAac55B.1.1420.014493
ORF1ab/nsp14A2-B48D48NGacAac55B.1.1600.000156
ORF1ab/nsp14A2-B48D48GgAcgGc55B.1.1600.000156
ORF1ab/nsp14A2-B48D48DgaCgaT44AT.10.020513
ORF1ab/nsp14A2-B48D48DgaCgaT44AY.1020.000106
ORF1ab/nsp14A2-B48D48NGacAac44AY.1030.000025
ORF1ab/nsp14A2-B48D48DgaCgaT44AY.290.000063
ORF1ab/nsp14A2-B48D48DgaCgaT44AY.330.000267
ORF1ab/nsp14A2-B48D48DgaCgaT44AY.390.000099
ORF1ab/nsp14A2-B48D48DgaCgaT44AY.99.20.000369
ORF1ab/nsp14A2-B48D48YGacTac44B.10.000037
ORF1ab/nsp14A2-B48D48GgAcgGc44B.1.177.830.005926
ORF1ab/nsp14A2-B48D48EgaCgaA44B.1.2580.000266
ORF1ab/nsp14A2-B48D48DgaCgaT44B.1.4290.000094
ORF1ab/nsp14A2-B48D48DgaCgaT44B.1.466.10.028777
ORF1ab/nsp14A2-B48D48DgaCgaT44B.1.5260.000094
ORF1ab/nsp14A2-B48D48DgaCgaT33A0.001161
ORF1ab/nsp14A2-B48D48VgAcgTc33All0.000001
ORF1ab/nsp14A2-B48D48DgaCgaT33AY.1170.000254
ORF1ab/nsp14A2-B48D48NGacAac33AY.230.000209
ORF1ab/nsp14A2-B48D48EgaCgaG33AY.40.000005
ORF1ab/nsp14A2-B48D48GgAcgGc33AY.40.000005
ORF1ab/nsp14A2-B48D48DgaCgaT33AY.610.000314
ORF1ab/nsp14A2-B48D48NGacAac33B0.000383
ORF1ab/nsp14A2-B48D48NGacAac33B.1.10.000054
ORF1ab/nsp14A2-B48D48NGacAac33B.1.1.3170.001235
ORF1ab/nsp14A2-B48D48DgaCgaT33B.1.4990.003151
ORF1ab/nsp14A2-B48D48DgaCgaT33P.10.000047
ORF1ab/nsp14A2-B48D48TGACACA220.111111
ORF1ab/nsp14A2-B48D48NGacAac22A0.000774
ORF1ab/nsp14A2-B48D48TGACACA22All0
ORF1ab/nsp14A2-B48D48HGacCac22All0
ORF1ab/nsp14A2-B48D48EgaCgaA22AY.1030.000012
ORF1ab/nsp14A2-B48D48YGacTac22AY.116.10.000623
ORF1ab/nsp14A2-B48D48EgaCgaA22AY.1210.000271
ORF1ab/nsp14A2-B48D48delGAC---22AY.250.000012
ORF1ab/nsp14A2-B48D48AgAcgCc22AY.40.000003
ORF1ab/nsp14A2-B48D48YGacTac22AY.40.000003
ORF1ab/nsp14A2-B48D48delGAC---22AY.4.50.000215
ORF1ab/nsp14A2-B48D48DgaCgaT22AY.46.40.000329
ORF1ab/nsp14A2-B48D48NGacAac22AY.540.000191
ORF1ab/nsp14A2-B48D48DgaCgaT22AY.9.10.000167
ORF1ab/nsp14A2-B48D48NGacAac22B.10.000018
ORF1ab/nsp14A2-B48D48YGacTac22B.1.10.000036
ORF1ab/nsp14A2-B48D48DgaCgaT22B.1.10.000036
ORF1ab/nsp14A2-B48D48NGacAac22B.1.1.3440.021505
ORF1ab/nsp14A2-B48D48YGacTac22B.1.1.5190.000079
ORF1ab/nsp14A2-B48D48GgAcgGc22B.1.1.70.000002
ORF1ab/nsp14A2-B48D48EgaCgaA22B.1.1.70.000002
ORF1ab/nsp14A2-B48D48NGacAac22B.1.1770.000026
ORF1ab/nsp14A2-B48D48NGacAac22B.1.360.000292
ORF1ab/nsp14A2-B48D48NGacAac22B.1.36.270.001527
ORF1ab/nsp14A2-B48D48VgAcgTc22B.1.4000.000858
ORF1ab/nsp14A2-B48D48DgaCgaT22B.1.4280.002041
ORF1ab/nsp14A2-B48D48DgaCgaT22B.1.4620.014493
ORF1ab/nsp14A2-B48D48DgaCgaT22B.1.466.20.000782
ORF1ab/nsp14A2-B48D48NGacAac22B.1.5240.002813
ORF1ab/nsp14A2-B48D48NGacAac22B.1.5750.000607
ORF1ab/nsp14A2-B48D48NGacAac22B.1.5960.000174
ORF1ab/nsp14A2-B48D48YGacTac22B.1.617.20.000008
ORF1ab/nsp14A2-B48D48NGacAac22B.400.000729
ORF1ab/nsp14A2-B48D48YGacTac22D.20.00015
ORF1ab/nsp14A2-B48D48NGacAac22P.1.150.000465
ORF1ab/nsp14A2-B48D48DgaCgaT22P.1.70.000639
ORF1ab/nsp14A2-B48D48DgaCgaT22Q.10.000253
ORF1ab/nsp14A2-B48D48YGacTac110.055556
ORF1ab/nsp14A2-B48D48NGacAac11AL.10.012987
ORF1ab/nsp14A2-B48D48del2gACg--11All0
ORF1ab/nsp14A2-B48D48DgaCgaT11AY.1010.00049
ORF1ab/nsp14A2-B48D48YGacTac11AY.1020.000027
ORF1ab/nsp14A2-B48D48GgAcgGc11AY.1030.000006
ORF1ab/nsp14A2-B48D48DgaCgaT11AY.1130.000142
ORF1ab/nsp14A2-B48D48DgaCgaT11AY.1180.000063
ORF1ab/nsp14A2-B48D48DgaCgaT11AY.1190.000035
ORF1ab/nsp14A2-B48D48GgAcgGc11AY.120.000316
ORF1ab/nsp14A2-B48D48YGacTac11AY.1210.000135
ORF1ab/nsp14A2-B48D48YGacTac11AY.140.000088
ORF1ab/nsp14A2-B48D48DgaCgaT11AY.190.00114
ORF1ab/nsp14A2-B48D48YGacTac11AY.250.000006
ORF1ab/nsp14A2-B48D48NGacAac11AY.250.000006
ORF1ab/nsp14A2-B48D48DgaCgaT11AY.260.000028
ORF1ab/nsp14A2-B48D48delGAC---11AY.360.000148
ORF1ab/nsp14A2-B48D48NGacAac11AY.390.000025
ORF1ab/nsp14A2-B48D48DgaCgaT11AY.39.10.00004
ORF1ab/nsp14A2-B48D48delGAC---11AY.40.000002
ORF1ab/nsp14A2-B48D48DgaCgaT11AY.4.20.000022
ORF1ab/nsp14A2-B48D48NGacAac11AY.420.00004
ORF1ab/nsp14A2-B48D48GgAcgGc11AY.430.000004
ORF1ab/nsp14A2-B48D48AgACgCT11AY.430.000004
ORF1ab/nsp14A2-B48D48NGacAac11AY.430.000004
ORF1ab/nsp14A2-B48D48EgaCgaA11AY.440.000006
ORF1ab/nsp14A2-B48D48YGacTac11AY.440.000006
ORF1ab/nsp14A2-B48D48NGacAac11AY.46.40.000165
ORF1ab/nsp14A2-B48D48NGacAac11AY.470.000031
ORF1ab/nsp14A2-B48D48EgaCgaA11AY.470.000031
ORF1ab/nsp14A2-B48D48DgaCgaT11AY.470.000031
ORF1ab/nsp14A2-B48D48AgAcgCc11AY.470.000031
ORF1ab/nsp14A2-B48D48DgaCgaT11AY.480.000465
ORF1ab/nsp14A2-B48D48DgaCgaT11AY.50.000021
ORF1ab/nsp14A2-B48D48NGacAac11AY.50.000021
ORF1ab/nsp14A2-B48D48DgaCgaT11AY.5.40.000277
ORF1ab/nsp14A2-B48D48YGacTac11AY.550.000917
ORF1ab/nsp14A2-B48D48DgaCgaT11AY.60.000041
ORF1ab/nsp14A2-B48D48DgaCgaT11AY.620.000436
ORF1ab/nsp14A2-B48D48DgaCgaT11AY.640.000595
ORF1ab/nsp14A2-B48D48delGAC---11AY.750.000056
ORF1ab/nsp14A2-B48D48DgaCgaT11AY.75.10.00018
ORF1ab/nsp14A2-B48D48DgaCgaT11AY.830.001724
ORF1ab/nsp14A2-B48D48YGacTac11AY.9.10.000084
ORF1ab/nsp14A2-B48D48NGacAac11AY.9.20.000037
ORF1ab/nsp14A2-B48D48DgaCgaT11AY.910.00073
ORF1ab/nsp14A2-B48D48NGacAac11AY.920.000287
ORF1ab/nsp14A2-B48D48DgaCgaT11AY.940.000443
ORF1ab/nsp14A2-B48D48NGacAac11AY.99.20.000092
ORF1ab/nsp14A2-B48D48GgAcgGc11B0.000128
ORF1ab/nsp14A2-B48D48GgAcgGc11B.10.000009
ORF1ab/nsp14A2-B48D48HGacCac11B.10.000009
ORF1ab/nsp14A2-B48D48delGAC---11B.10.000009
ORF1ab/nsp14A2-B48D48EgaCgaA11B.10.000009
ORF1ab/nsp14A2-B48D48delGAC---11B.1.10.000018
ORF1ab/nsp14A2-B48D48EgaCgaA11B.1.10.000018
ORF1ab/nsp14A2-B48D48DgaCgaT11B.1.1.1330.008475
ORF1ab/nsp14A2-B48D48DgaCgaT11B.1.1.1350.004695
ORF1ab/nsp14A2-B48D48DgaCgaT11B.1.1.250.000569
ORF1ab/nsp14A2-B48D48NGacAac11B.1.1.2550.00303
ORF1ab/nsp14A2-B48D48AgAcgCc11B.1.1.2790.001121
ORF1ab/nsp14A2-B48D48DgaCgaT11B.1.1.2840.000107
ORF1ab/nsp14A2-B48D48YGacTac11B.1.1.2860.002899
ORF1ab/nsp14A2-B48D48DgaCgaT11B.1.1.2910.000742
ORF1ab/nsp14A2-B48D48DgaCgaT11B.1.1.3060.000438
ORF1ab/nsp14A2-B48D48YGacTac11B.1.1.3110.000358
ORF1ab/nsp14A2-B48D48DgaCgaT11B.1.1.3180.000302
ORF1ab/nsp14A2-B48D48GgAcgGc11B.1.1.5190.00004
ORF1ab/nsp14A2-B48D48NGacAac11B.1.1.630.000386
ORF1ab/nsp14A2-B48D48AgAcgCc11B.1.1.70.000001
ORF1ab/nsp14A2-B48D48DgaCgaT11B.1.1390.000733
ORF1ab/nsp14A2-B48D48DgaCgaT11B.1.1600.000031
ORF1ab/nsp14A2-B48D48delGAC---11B.1.1770.000013
ORF1ab/nsp14A2-B48D48YGacTac11B.1.1770.000013
ORF1ab/nsp14A2-B48D48GgAcgGc11B.1.1770.000013
ORF1ab/nsp14A2-B48D48EgaCgaA11B.1.1770.000013
ORF1ab/nsp14A2-B48D48NGacAac11B.1.177.450.000381
ORF1ab/nsp14A2-B48D48GgAcgGc11B.1.177.620.001192
ORF1ab/nsp14A2-B48D48delGAC---11B.1.177.680.015152
ORF1ab/nsp14A2-B48D48NGacAac11B.1.177.70.000165
ORF1ab/nsp14A2-B48D48DgaCgaT11B.1.177.70.000165
ORF1ab/nsp14A2-B48D48YGacTac11B.1.177.810.000189
ORF1ab/nsp14A2-B48D48DgaCgaT11B.1.177.860.000183
ORF1ab/nsp14A2-B48D48NGacAac11B.1.177.90.001332
ORF1ab/nsp14A2-B48D48GgAcgGc11B.1.20.000009
ORF1ab/nsp14A2-B48D48NGacAac11B.1.2210.000071
ORF1ab/nsp14A2-B48D48DgaCgaT11B.1.2210.000071
ORF1ab/nsp14A2-B48D48AgAcgCc11B.1.2370.004975
ORF1ab/nsp14A2-B48D48AgAcgCc11B.1.2580.000067
ORF1ab/nsp14A2-B48D48VgAcgTc11B.1.2580.000067
ORF1ab/nsp14A2-B48D48del2gACg--11B.1.2580.000067
ORF1ab/nsp14A2-B48D48NGacAac11B.1.2580.000067
ORF1ab/nsp14A2-B48D48DgaCgaT11B.1.258.40.003448
ORF1ab/nsp14A2-B48D48GgAcgGc11B.1.2600.003344
ORF1ab/nsp14A2-B48D48DgaCgaT11B.1.3490.000715
ORF1ab/nsp14A2-B48D48NGacAac11B.1.351.30.000876
ORF1ab/nsp14A2-B48D48NGacAac11B.1.36.260.002857
ORF1ab/nsp14A2-B48D48DgaCgaT11B.1.3960.000706
ORF1ab/nsp14A2-B48D48NGacAac11B.1.4270.00005
ORF1ab/nsp14A2-B48D48YGacTac11B.1.4290.000024
ORF1ab/nsp14A2-B48D48NGacAac11B.1.4560.003268
ORF1ab/nsp14A2-B48D48YGacTac11B.1.5260.000024
ORF1ab/nsp14A2-B48D48NGacAac11B.1.5260.000024
ORF1ab/nsp14A2-B48D48DgaCgaT11B.1.5510.00129
ORF1ab/nsp14A2-B48D48delGAC---11B.1.5610.000397
ORF1ab/nsp14A2-B48D48DgaCgaT11B.1.5650.00081
ORF1ab/nsp14A2-B48D48delGAC---11B.1.5820.000491
ORF1ab/nsp14A2-B48D48YGacTac11B.1.5950.000261
ORF1ab/nsp14A2-B48D48DgaCgaT11B.1.5950.000261
ORF1ab/nsp14A2-B48D48DgaCgaT11B.1.5960.000087
ORF1ab/nsp14A2-B48D48DgaCgaT11B.1.6050.005952
ORF1ab/nsp14A2-B48D48DgaCgaT11B.1.617.10.000129
ORF1ab/nsp14A2-B48D48YGacTac11B.1.6210.000089
ORF1ab/nsp14A2-B48D48DgaCgaT11B.1.6210.000089
ORF1ab/nsp14A2-B48D48HGacCac11B.1.6370.000073
ORF1ab/nsp14A2-B48D48YGacTac11B.60.00091
ORF1ab/nsp14A2-B48D48DgaCgaT11B.610.005747
ORF1ab/nsp14A2-B48D48DgaCgaT11D.50.004975
ORF1ab/nsp14A2-B48D48DgaCgaT11N.40.004255
ORF1ab/nsp14A2-B48D48GgAcgGc11P.10.000016
ORF1ab/nsp14A2-B48D48delGAC---11P.10.000016
ORF1ab/nsp14A2-B48D48NGacAac11P.1.10.000318
ORF1ab/nsp14A2-B48D48NGacAac11P.1.120.000484
ORF1ab/nsp14A2-B48D48NGacAac11P.1.20.001156
ORF1ab/nsp14A2-B48D48GgAcgGc11Q.40.000455
ORF1ab/nsp14A2-B48D48NGacAac11Q.80.000165