CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp14A2-B : CodonNum = 47

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF1ab/nsp14A2-B	47	K47K	K5972K	syn	aaG	aaA	1280	1280	1	18178-18180
ORF1ab/nsp14A2-B	47	K47N	K5972N	nonsyn	aaG	aaT	279	276	0.989247	18178-18180
ORF1ab/nsp14A2-B	47	K47N	K5972N	nonsyn	aaG	aaC	279	3	0.0107527	18178-18180
ORF1ab/nsp14A2-B	47	K47R	K5972R	nonsyn	aAg	aGg	110	110	1	18178-18180
ORF1ab/nsp14A2-B	47	K47del	K5972del	del	AAG	---	20	20	1	18178-18180
ORF1ab/nsp14A2-B	47	K47E	K5972E	nonsyn	Aag	Gag	10	10	1	18178-18180
ORF1ab/nsp14A2-B	47	K47M	K5972M	nonsyn	aAg	aTg	6	6	1	18178-18180
ORF1ab/nsp14A2-B	47	K47del1	K5972del1	del	Aag	-ag	6	3	0.5	18178-18180
ORF1ab/nsp14A2-B	47	K47del1	K5972del1	del	aaG	aa-	6	2	0.333333	18178-18180
ORF1ab/nsp14A2-B	47	K47del1	K5972del1	del	AAg	-Gg	6	1	0.166667	18178-18180
ORF1ab/nsp14A2-B	47	K47Q	K5972Q	nonsyn	Aag	Cag	5	3	0.6	18178-18180
ORF1ab/nsp14A2-B	47	K47Q	K5972Q	nonsyn	AaG	CaA	5	2	0.4	18178-18180
ORF1ab/nsp14A2-B	47	K47T	K5972T	nonsyn	aAg	aCg	4	4	1	18178-18180
ORF1ab/nsp14A2-B	47	K47X	K5972X	nonsyn	Aag	Tag	2	2	1	18178-18180
ORF1ab/nsp14A2-B	47	K47del2	K5972del2	del	AAg	--g	2	1	0.5	18178-18180
ORF1ab/nsp14A2-B	47	K47del2	K5972del2	del	aAG	a--	2	1	0.5	18178-18180
ORF1ab/nsp14A2-B	47	K47P	K5972P	nonsyn	AAg	CCg	1	1	1	18178-18180

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF1ab/nsp14A2-B	47	K47K	aaG	aaA	1280	1280	All	0.000245
ORF1ab/nsp14A2-B	47	K47K	aaG	aaA	430	430	B.1.36.27	0.328244
ORF1ab/nsp14A2-B	47	K47N	aaG	aaT	276	279	All	0.000053
ORF1ab/nsp14A2-B	47	K47N	aaG	aaC	3	279	All	0.000001
ORF1ab/nsp14A2-B	47	K47K	aaG	aaA	166	166	AY.4	0.000258
ORF1ab/nsp14A2-B	47	K47K	aaG	aaA	149	149	B.1.1.7	0.000133
ORF1ab/nsp14A2-B	47	K47R	aAg	aGg	110	110	All	0.000021
ORF1ab/nsp14A2-B	47	K47K	aaG	aaA	82	82	B.1.429	0.001929
ORF1ab/nsp14A2-B	47	K47K	aaG	aaA	72	72	B.1.36	0.010505
ORF1ab/nsp14A2-B	47	K47N	aaG	aaT	70	71	B.1.1.7	0.000063
ORF1ab/nsp14A2-B	47	K47N	aaG	aaC	1	71	B.1.1.7	0.000001
ORF1ab/nsp14A2-B	47	K47K	aaG	aaA	48	48	AY.25	0.000289
ORF1ab/nsp14A2-B	47	K47N	aaG	aaT	46	46	AY.103	0.000286
ORF1ab/nsp14A2-B	47	K47K	aaG	aaA	37	37	B.1.1.328	0.627119
ORF1ab/nsp14A2-B	47	K47K	aaG	aaA	28	28	B.1	0.000256
ORF1ab/nsp14A2-B	47	K47K	aaG	aaA	28	28	R.1	0.00252
ORF1ab/nsp14A2-B	47	K47N	aaG	aaT	25	27	AY.4	0.000039
ORF1ab/nsp14A2-B	47	K47N	aaG	aaC	2	27	AY.4	0.000003
ORF1ab/nsp14A2-B	47	K47K	aaG	aaA	23	23	AY.44	0.00014
ORF1ab/nsp14A2-B	47	K47del	AAG	---	20	20	All	0.000004
ORF1ab/nsp14A2-B	47	K47R	aAg	aGg	18	18	B.1.1.7	0.000016
ORF1ab/nsp14A2-B	47	K47R	aAg	aGg	18	18	B.1.2	0.000158
ORF1ab/nsp14A2-B	47	K47K	aaG	aaA	17	17	P.1.15	0.00395
ORF1ab/nsp14A2-B	47	K47K	aaG	aaA	16	16	P.1	0.000252
ORF1ab/nsp14A2-B	47	K47K	aaG	aaA	15	15	B.1.2	0.000132
ORF1ab/nsp14A2-B	47	K47K	aaG	aaA	14	14	B.1.617.2	0.000053
ORF1ab/nsp14A2-B	47	K47N	aaG	aaT	12	12	AY.43	0.000053
ORF1ab/nsp14A2-B	47	K47R	aAg	aGg	12	12	B.1.243	0.000835
ORF1ab/nsp14A2-B	47	K47K	aaG	aaA	11	11	B.1.1.214	0.00061
ORF1ab/nsp14A2-B	47	K47N	aaG	aaT	11	11	B.1.526	0.000259
ORF1ab/nsp14A2-B	47	K47R	aAg	aGg	11	11	B.1.617.2	0.000041
ORF1ab/nsp14A2-B	47	K47E	Aag	Gag	10	10	All	0.000002
ORF1ab/nsp14A2-B	47	K47N	aaG	aaT	10	10	AY.25	0.00006
ORF1ab/nsp14A2-B	47	K47K	aaG	aaA	10	10	AY.39	0.000247
ORF1ab/nsp14A2-B	47	K47N	aaG	aaT	9	9	AY.44	0.000055
ORF1ab/nsp14A2-B	47	K47N	aaG	aaT	9	9	B.1.617.2	0.000034
ORF1ab/nsp14A2-B	47	K47R	aAg	aGg	8	8	AY.4	0.000012
ORF1ab/nsp14A2-B	47	K47K	aaG	aaA	8	8	AY.43	0.000035
ORF1ab/nsp14A2-B	47	K47N	aaG	aaT	7	7	AY.4.2	0.000152
ORF1ab/nsp14A2-B	47	K47R	aAg	aGg	7	7	AY.44	0.000043
ORF1ab/nsp14A2-B	47	K47K	aaG	aaA	7	7	AY.5.3	0.002362
ORF1ab/nsp14A2-B	47	K47K	aaG	aaA	7	7	B.1.1	0.000127
ORF1ab/nsp14A2-B	47	K47del	AAG	---	7	7	B.1.1.7	0.000006
ORF1ab/nsp14A2-B	47	K47M	aAg	aTg	6	6	All	0.000001
ORF1ab/nsp14A2-B	47	K47del1	Aag	-ag	3	6	All	0.000001
ORF1ab/nsp14A2-B	47	K47del1	aaG	aa-	2	6	All	0
ORF1ab/nsp14A2-B	47	K47del1	AAg	-Gg	1	6	All	0
ORF1ab/nsp14A2-B	47	K47K	aaG	aaA	6	6	AY.103	0.000037
ORF1ab/nsp14A2-B	47	K47N	aaG	aaT	6	6	AY.3	0.00006
ORF1ab/nsp14A2-B	47	K47K	aaG	aaA	6	6	B.1.1.10	0.006689
ORF1ab/nsp14A2-B	47	K47K	aaG	aaA	6	6	B.1.1.519	0.000238
ORF1ab/nsp14A2-B	47	K47Q	Aag	Cag	3	5	All	0.000001
ORF1ab/nsp14A2-B	47	K47Q	AaG	CaA	2	5	All	0
ORF1ab/nsp14A2-B	47	K47N	aaG	aaT	5	5	AM.4	0.017857
ORF1ab/nsp14A2-B	47	K47N	aaG	aaT	5	5	AY.3.1	0.000426
ORF1ab/nsp14A2-B	47	K47T	aAg	aCg	4	4	All	0.000001
ORF1ab/nsp14A2-B	47	K47K	aaG	aaA	4	4	AY.20	0.000155
ORF1ab/nsp14A2-B	47	K47K	aaG	aaA	4	4	AY.26	0.000113
ORF1ab/nsp14A2-B	47	K47R	aAg	aGg	4	4	AY.39	0.000099
ORF1ab/nsp14A2-B	47	K47N	aaG	aaT	4	4	AY.42	0.000161
ORF1ab/nsp14A2-B	47	K47K	aaG	aaA	4	4	AY.59	0.002119
ORF1ab/nsp14A2-B	47	K47R	aAg	aGg	4	4	B.1	0.000037
ORF1ab/nsp14A2-B	47	K47K	aaG	aaA	4	4	B.1.177	0.000053
ORF1ab/nsp14A2-B	47	K47N	aaG	aaT	4	4	B.1.429	0.000094
ORF1ab/nsp14A2-B	47	K47K	aaG	aaA	4	4	B.1.621	0.000354
ORF1ab/nsp14A2-B	47	K47K	aaG	aaA	3	3	AY.102	0.00008
ORF1ab/nsp14A2-B	47	K47R	aAg	aGg	3	3	AY.3	0.00003
ORF1ab/nsp14A2-B	47	K47E	Aag	Gag	3	3	AY.4	0.000005
ORF1ab/nsp14A2-B	47	K47N	aaG	aaT	3	3	AY.5	0.000062
ORF1ab/nsp14A2-B	47	K47K	aaG	aaA	3	3	AY.9.1	0.000251
ORF1ab/nsp14A2-B	47	K47K	aaG	aaA	3	3	AY.98.1	0.000145
ORF1ab/nsp14A2-B	47	K47N	aaG	aaT	3	3	B.1	0.000027
ORF1ab/nsp14A2-B	47	K47N	aaG	aaT	3	3	B.1.1.157	0.00274
ORF1ab/nsp14A2-B	47	K47R	aAg	aGg	3	3	B.1.177	0.00004
ORF1ab/nsp14A2-B	47	K47K	aaG	aaA	3	3	B.1.177.32	0.004049
ORF1ab/nsp14A2-B	47	K47N	aaG	aaT	3	3	B.1.177.58	0.003995
ORF1ab/nsp14A2-B	47	K47N	aaG	aaT	3	3	B.1.2	0.000026
ORF1ab/nsp14A2-B	47	K47R	aAg	aGg	3	3	B.1.221.1	0.008721
ORF1ab/nsp14A2-B	47	K47R	aAg	aGg	3	3	B.1.470	0.004213
ORF1ab/nsp14A2-B	47	K47K	aaG	aaA	3	3	P.1.14	0.000143
ORF1ab/nsp14A2-B	47	K47K	aaG	aaA	3	3	Q.1	0.000379
ORF1ab/nsp14A2-B	47	K47E	Aag	Gag	2	2		0.111111
ORF1ab/nsp14A2-B	47	K47X	Aag	Tag	2	2	All	0
ORF1ab/nsp14A2-B	47	K47del2	aAG	a--	1	2	All	0
ORF1ab/nsp14A2-B	47	K47del2	AAg	--g	1	2	All	0
ORF1ab/nsp14A2-B	47	K47K	aaG	aaA	2	2	AY.114	0.000462
ORF1ab/nsp14A2-B	47	K47N	aaG	aaT	2	2	AY.118	0.000125
ORF1ab/nsp14A2-B	47	K47del	AAG	---	2	2	AY.25	0.000012
ORF1ab/nsp14A2-B	47	K47R	aAg	aGg	2	2	AY.25	0.000012
ORF1ab/nsp14A2-B	47	K47K	aaG	aaA	2	2	AY.29	0.000032
ORF1ab/nsp14A2-B	47	K47K	aaG	aaA	2	2	AY.3	0.00002
ORF1ab/nsp14A2-B	47	K47R	aAg	aGg	2	2	AY.3.1	0.000171
ORF1ab/nsp14A2-B	47	K47N	aaG	aaT	2	2	AY.34	0.000194
ORF1ab/nsp14A2-B	47	K47K	aaG	aaA	2	2	AY.34	0.000194
ORF1ab/nsp14A2-B	47	K47del	AAG	---	2	2	AY.4.5	0.000215
ORF1ab/nsp14A2-B	47	K47K	aaG	aaA	2	2	AY.42	0.00008
ORF1ab/nsp14A2-B	47	K47K	aaG	aaA	2	2	AY.5	0.000041
ORF1ab/nsp14A2-B	47	K47N	aaG	aaT	2	2	B.1.1.33	0.000842
ORF1ab/nsp14A2-B	47	K47K	aaG	aaA	2	2	B.1.160	0.000062
ORF1ab/nsp14A2-B	47	K47N	aaG	aaT	2	2	C.37	0.000232
ORF1ab/nsp14A2-B	47	K47K	aaG	aaA	1	1		0.055556
ORF1ab/nsp14A2-B	47	K47del1	aaG	aa-	1	1	A	0.000387
ORF1ab/nsp14A2-B	47	K47K	aaG	aaA	1	1	A.2.4	0.003367
ORF1ab/nsp14A2-B	47	K47K	aaG	aaA	1	1	A.5	0.001923
ORF1ab/nsp14A2-B	47	K47P	AAg	CCg	1	1	All	0
ORF1ab/nsp14A2-B	47	K47K	aaG	aaA	1	1	AY.100	0.000046
ORF1ab/nsp14A2-B	47	K47R	aAg	aGg	1	1	AY.103	0.000006
ORF1ab/nsp14A2-B	47	K47N	aaG	aaT	1	1	AY.117	0.000085
ORF1ab/nsp14A2-B	47	K47K	aaG	aaA	1	1	AY.118	0.000063
ORF1ab/nsp14A2-B	47	K47N	aaG	aaT	1	1	AY.119	0.000035
ORF1ab/nsp14A2-B	47	K47K	aaG	aaA	1	1	AY.12	0.000316
ORF1ab/nsp14A2-B	47	K47N	aaG	aaT	1	1	AY.120	0.000037
ORF1ab/nsp14A2-B	47	K47N	aaG	aaT	1	1	AY.13	0.000161
ORF1ab/nsp14A2-B	47	K47K	aaG	aaA	1	1	AY.2	0.000356
ORF1ab/nsp14A2-B	47	K47R	aAg	aGg	1	1	AY.23.1	0.000417
ORF1ab/nsp14A2-B	47	K47T	aAg	aCg	1	1	AY.25	0.000006
ORF1ab/nsp14A2-B	47	K47N	aaG	aaT	1	1	AY.29	0.000016
ORF1ab/nsp14A2-B	47	K47K	aaG	aaA	1	1	AY.33	0.000067
ORF1ab/nsp14A2-B	47	K47K	aaG	aaA	1	1	AY.36	0.000148
ORF1ab/nsp14A2-B	47	K47N	aaG	aaT	1	1	AY.39	0.000025
ORF1ab/nsp14A2-B	47	K47K	aaG	aaA	1	1	AY.39.1	0.00004
ORF1ab/nsp14A2-B	47	K47del	AAG	---	1	1	AY.4	0.000002
ORF1ab/nsp14A2-B	47	K47M	aAg	aTg	1	1	AY.4.2	0.000022
ORF1ab/nsp14A2-B	47	K47K	aaG	aaA	1	1	AY.4.2	0.000022
ORF1ab/nsp14A2-B	47	K47del1	Aag	-ag	1	1	AY.4.5	0.000107
ORF1ab/nsp14A2-B	47	K47N	aaG	aaT	1	1	AY.41	0.000294
ORF1ab/nsp14A2-B	47	K47R	aAg	aGg	1	1	AY.43	0.000004
ORF1ab/nsp14A2-B	47	K47K	aaG	aaA	1	1	AY.45	0.000122
ORF1ab/nsp14A2-B	47	K47K	aaG	aaA	1	1	AY.46	0.000104
ORF1ab/nsp14A2-B	47	K47N	aaG	aaT	1	1	AY.46.3	0.000934
ORF1ab/nsp14A2-B	47	K47N	aaG	aaT	1	1	AY.46.5	0.000198
ORF1ab/nsp14A2-B	47	K47N	aaG	aaT	1	1	AY.47	0.000031
ORF1ab/nsp14A2-B	47	K47N	aaG	aaT	1	1	AY.5.3	0.000337
ORF1ab/nsp14A2-B	47	K47Q	Aag	Cag	1	1	AY.52	0.000814
ORF1ab/nsp14A2-B	47	K47T	aAg	aCg	1	1	AY.53	0.000288
ORF1ab/nsp14A2-B	47	K47K	aaG	aaA	1	1	AY.6	0.000041
ORF1ab/nsp14A2-B	47	K47N	aaG	aaT	1	1	AY.6	0.000041
ORF1ab/nsp14A2-B	47	K47K	aaG	aaA	1	1	AY.61	0.000105
ORF1ab/nsp14A2-B	47	K47N	aaG	aaT	1	1	AY.61	0.000105
ORF1ab/nsp14A2-B	47	K47K	aaG	aaA	1	1	AY.68	0.000274
ORF1ab/nsp14A2-B	47	K47K	aaG	aaA	1	1	AY.7.1	0.000113
ORF1ab/nsp14A2-B	47	K47X	Aag	Tag	1	1	AY.7.1	0.000113
ORF1ab/nsp14A2-B	47	K47K	aaG	aaA	1	1	AY.70	0.000209
ORF1ab/nsp14A2-B	47	K47del	AAG	---	1	1	AY.75	0.000056
ORF1ab/nsp14A2-B	47	K47N	aaG	aaT	1	1	AY.75	0.000056
ORF1ab/nsp14A2-B	47	K47R	aAg	aGg	1	1	AY.75.1	0.00018
ORF1ab/nsp14A2-B	47	K47E	Aag	Gag	1	1	AY.9.2	0.000037
ORF1ab/nsp14A2-B	47	K47N	aaG	aaT	1	1	AY.9.2	0.000037
ORF1ab/nsp14A2-B	47	K47N	aaG	aaT	1	1	AY.98	0.000079
ORF1ab/nsp14A2-B	47	K47K	aaG	aaA	1	1	B	0.000128
ORF1ab/nsp14A2-B	47	K47M	aAg	aTg	1	1	B.1	0.000009
ORF1ab/nsp14A2-B	47	K47Q	Aag	Cag	1	1	B.1	0.000009
ORF1ab/nsp14A2-B	47	K47del	AAG	---	1	1	B.1	0.000009
ORF1ab/nsp14A2-B	47	K47del1	AAg	-Gg	1	1	B.1	0.000009
ORF1ab/nsp14A2-B	47	K47X	Aag	Tag	1	1	B.1	0.000009
ORF1ab/nsp14A2-B	47	K47Q	AaG	CaA	1	1	B.1.1	0.000018
ORF1ab/nsp14A2-B	47	K47N	aaG	aaT	1	1	B.1.1	0.000018
ORF1ab/nsp14A2-B	47	K47R	aAg	aGg	1	1	B.1.1	0.000018
ORF1ab/nsp14A2-B	47	K47del	AAG	---	1	1	B.1.1	0.000018
ORF1ab/nsp14A2-B	47	K47K	aaG	aaA	1	1	B.1.1.181	0.004545
ORF1ab/nsp14A2-B	47	K47N	aaG	aaT	1	1	B.1.1.25	0.000569
ORF1ab/nsp14A2-B	47	K47K	aaG	aaA	1	1	B.1.1.277	0.000759
ORF1ab/nsp14A2-B	47	K47R	aAg	aGg	1	1	B.1.1.294	0.001266
ORF1ab/nsp14A2-B	47	K47K	aaG	aaA	1	1	B.1.1.389	0.006061
ORF1ab/nsp14A2-B	47	K47del1	aaG	aa-	1	1	B.1.1.7	0.000001
ORF1ab/nsp14A2-B	47	K47del2	aAG	a--	1	1	B.1.1.7	0.000001
ORF1ab/nsp14A2-B	47	K47T	aAg	aCg	1	1	B.1.1.7	0.000001
ORF1ab/nsp14A2-B	47	K47R	aAg	aGg	1	1	B.1.124	0.007812
ORF1ab/nsp14A2-B	47	K47del	AAG	---	1	1	B.1.177	0.000013
ORF1ab/nsp14A2-B	47	K47E	Aag	Gag	1	1	B.1.177	0.000013
ORF1ab/nsp14A2-B	47	K47N	aaG	aaT	1	1	B.1.177.12	0.000152
ORF1ab/nsp14A2-B	47	K47N	aaG	aaT	1	1	B.1.177.35	0.000691
ORF1ab/nsp14A2-B	47	K47del2	AAg	--g	1	1	B.1.177.57	0.000281
ORF1ab/nsp14A2-B	47	K47del	AAG	---	1	1	B.1.177.68	0.015152
ORF1ab/nsp14A2-B	47	K47K	aaG	aaA	1	1	B.1.177.7	0.000165
ORF1ab/nsp14A2-B	47	K47K	aaG	aaA	1	1	B.1.177.73	0.000566
ORF1ab/nsp14A2-B	47	K47K	aaG	aaA	1	1	B.1.177.81	0.000189
ORF1ab/nsp14A2-B	47	K47K	aaG	aaA	1	1	B.1.177.82	0.000477
ORF1ab/nsp14A2-B	47	K47K	aaG	aaA	1	1	B.1.177.83	0.001481
ORF1ab/nsp14A2-B	47	K47E	Aag	Gag	1	1	B.1.177.87	0.000728
ORF1ab/nsp14A2-B	47	K47K	aaG	aaA	1	1	B.1.177.9	0.001332
ORF1ab/nsp14A2-B	47	K47del1	Aag	-ag	1	1	B.1.2	0.000009
ORF1ab/nsp14A2-B	47	K47M	aAg	aTg	1	1	B.1.2	0.000009
ORF1ab/nsp14A2-B	47	K47Q	AaG	CaA	1	1	B.1.2	0.000009
ORF1ab/nsp14A2-B	47	K47N	aaG	aaT	1	1	B.1.22	0.001318
ORF1ab/nsp14A2-B	47	K47R	aAg	aGg	1	1	B.1.221	0.000071
ORF1ab/nsp14A2-B	47	K47del1	Aag	-ag	1	1	B.1.222	0.001692
ORF1ab/nsp14A2-B	47	K47K	aaG	aaA	1	1	B.1.234	0.000132
ORF1ab/nsp14A2-B	47	K47N	aaG	aaT	1	1	B.1.258	0.000067
ORF1ab/nsp14A2-B	47	K47R	aAg	aGg	1	1	B.1.258	0.000067
ORF1ab/nsp14A2-B	47	K47M	aAg	aTg	1	1	B.1.258.17	0.000104
ORF1ab/nsp14A2-B	47	K47K	aaG	aaA	1	1	B.1.258.17	0.000104
ORF1ab/nsp14A2-B	47	K47K	aaG	aaA	1	1	B.1.260	0.003344
ORF1ab/nsp14A2-B	47	K47K	aaG	aaA	1	1	B.1.320	0.001245
ORF1ab/nsp14A2-B	47	K47N	aaG	aaT	1	1	B.1.332	0.003497
ORF1ab/nsp14A2-B	47	K47R	aAg	aGg	1	1	B.1.351	0.00003
ORF1ab/nsp14A2-B	47	K47N	aaG	aaT	1	1	B.1.351.2	0.000303
ORF1ab/nsp14A2-B	47	K47K	aaG	aaA	1	1	B.1.351.2	0.000303
ORF1ab/nsp14A2-B	47	K47K	aaG	aaA	1	1	B.1.36.10	0.004785
ORF1ab/nsp14A2-B	47	K47N	aaG	aaT	1	1	B.1.36.36	0.000602
ORF1ab/nsp14A2-B	47	K47E	Aag	Gag	1	1	B.1.39	0.003906
ORF1ab/nsp14A2-B	47	K47N	aaG	aaT	1	1	B.1.404	0.001302
ORF1ab/nsp14A2-B	47	K47K	aaG	aaA	1	1	B.1.427	0.00005
ORF1ab/nsp14A2-B	47	K47K	aaG	aaA	1	1	B.1.456	0.003268
ORF1ab/nsp14A2-B	47	K47E	Aag	Gag	1	1	B.1.526	0.000024
ORF1ab/nsp14A2-B	47	K47del	AAG	---	1	1	B.1.561	0.000397
ORF1ab/nsp14A2-B	47	K47N	aaG	aaT	1	1	B.1.564	0.000426
ORF1ab/nsp14A2-B	47	K47K	aaG	aaA	1	1	B.1.564.1	0.001577
ORF1ab/nsp14A2-B	47	K47del	AAG	---	1	1	B.1.582	0.000491
ORF1ab/nsp14A2-B	47	K47K	aaG	aaA	1	1	B.1.599	0.00365
ORF1ab/nsp14A2-B	47	K47P	AAg	CCg	1	1	B.1.617.2	0.000004
ORF1ab/nsp14A2-B	47	K47Q	Aag	Cag	1	1	B.1.617.2	0.000004
ORF1ab/nsp14A2-B	47	K47T	aAg	aCg	1	1	B.1.617.2	0.000004
ORF1ab/nsp14A2-B	47	K47M	aAg	aTg	1	1	B.1.617.2	0.000004
ORF1ab/nsp14A2-B	47	K47K	aaG	aaA	1	1	B.23	0.002924
ORF1ab/nsp14A2-B	47	K47K	aaG	aaA	1	1	B.3	0.000831
ORF1ab/nsp14A2-B	47	K47M	aAg	aTg	1	1	D.2	0.000075
ORF1ab/nsp14A2-B	47	K47N	aaG	aaT	1	1	D.2	0.000075
ORF1ab/nsp14A2-B	47	K47del	AAG	---	1	1	P.1	0.000016
ORF1ab/nsp14A2-B	47	K47R	aAg	aGg	1	1	P.1	0.000016
ORF1ab/nsp14A2-B	47	K47K	aaG	aaA	1	1	P.1.10	0.000269
ORF1ab/nsp14A2-B	47	K47N	aaG	aaT	1	1	P.1.14	0.000048
ORF1ab/nsp14A2-B	47	K47R	aAg	aGg	1	1	P.1.15	0.000232
ORF1ab/nsp14A2-B	47	K47K	aaG	aaA	1	1	Q.8	0.000165
ORF1ab/nsp14A2-B	47	K47N	aaG	aaT	1	1	W.4	0.001351

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.