CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp14A2-B : CodonNum = 445

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF1ab/nsp14A2-B	445	F445F	F6370F	syn	ttC	ttT	5855	5855	1	19372-19374
ORF1ab/nsp14A2-B	445	F445del	F6370del	del	TTC	---	1574	1574	1	19372-19374
ORF1ab/nsp14A2-B	445	F445L	F6370L	nonsyn	ttC	ttA	77	36	0.467532	19372-19374
ORF1ab/nsp14A2-B	445	F445L	F6370L	nonsyn	Ttc	Ctc	77	30	0.38961	19372-19374
ORF1ab/nsp14A2-B	445	F445L	F6370L	nonsyn	ttC	ttG	77	10	0.12987	19372-19374
ORF1ab/nsp14A2-B	445	F445L	F6370L	nonsyn	TtC	CtT	77	1	0.012987	19372-19374
ORF1ab/nsp14A2-B	445	F445S	F6370S	nonsyn	tTc	tCc	18	16	0.888889	19372-19374
ORF1ab/nsp14A2-B	445	F445S	F6370S	nonsyn	tTC	tCT	18	2	0.111111	19372-19374
ORF1ab/nsp14A2-B	445	F445V	F6370V	nonsyn	Ttc	Gtc	16	16	1	19372-19374
ORF1ab/nsp14A2-B	445	F445C	F6370C	nonsyn	tTc	tGc	12	12	1	19372-19374
ORF1ab/nsp14A2-B	445	F445del2	F6370del2	del	TTC	--N	9	5	0.555556	19372-19374
ORF1ab/nsp14A2-B	445	F445del2	F6370del2	del	tTC	t--	9	2	0.222222	19372-19374
ORF1ab/nsp14A2-B	445	F445del2	F6370del2	del	TTc	--c	9	2	0.222222	19372-19374
ORF1ab/nsp14A2-B	445	F445del1	F6370del1	del	TTC	-NN	6	2	0.333333	19372-19374
ORF1ab/nsp14A2-B	445	F445del1	F6370del1	del	ttC	tt-	6	2	0.333333	19372-19374
ORF1ab/nsp14A2-B	445	F445del1	F6370del1	del	TtC	-tN	6	1	0.166667	19372-19374
ORF1ab/nsp14A2-B	445	F445del1	F6370del1	del	Ttc	-tc	6	1	0.166667	19372-19374
ORF1ab/nsp14A2-B	445	F445I	F6370I	nonsyn	Ttc	Atc	5	5	1	19372-19374
ORF1ab/nsp14A2-B	445	F445Y	F6370Y	nonsyn	tTc	tAc	3	3	1	19372-19374
ORF1ab/nsp14A2-B	445	F445P	F6370P	nonsyn	TTc	CCc	1	1	1	19372-19374
ORF1ab/nsp14A2-B	445	F445X	F6370X	nonsyn	tTC	tAG	1	1	1	19372-19374

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	5855	5855	All	0.00112
ORF1ab/nsp14A2-B	445	F445del	TTC	---	1574	1574	All	0.000301
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	879	879	B.1.617.2	0.00331
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	725	725	B.1.1.7	0.000649
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	651	651	AP.1	0.977477
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	570	570	AY.4	0.000887
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	328	328	AY.44	0.001996
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	228	228	B.1.111	0.26792
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	218	218	B.1.2	0.00192
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	185	185	B.1.234	0.02441
ORF1ab/nsp14A2-B	445	F445del	TTC	---	181	181	AY.43	0.000802
ORF1ab/nsp14A2-B	445	F445del	TTC	---	156	156	B.1.2	0.001374
ORF1ab/nsp14A2-B	445	F445del	TTC	---	146	146	B.1.617.2	0.00055
ORF1ab/nsp14A2-B	445	F445del	TTC	---	111	111	B.1	0.001017
ORF1ab/nsp14A2-B	445	F445del	TTC	---	104	104	B.1.1.7	0.000093
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	103	103	AY.20	0.004003
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	103	103	P.1	0.001623
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	86	86	AY.3	0.000855
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	82	82	AY.75	0.004594
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	81	81	AY.43	0.000359
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	81	81	B.1.1	0.001469
ORF1ab/nsp14A2-B	445	F445L	ttC	ttA	36	77	All	0.000007
ORF1ab/nsp14A2-B	445	F445L	Ttc	Ctc	30	77	All	0.000006
ORF1ab/nsp14A2-B	445	F445L	ttC	ttG	10	77	All	0.000002
ORF1ab/nsp14A2-B	445	F445L	TtC	CtT	1	77	All	0
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	70	70	B.1.429	0.001647
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	65	65	B.1.160	0.002027
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	62	62	AY.79	0.075061
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	59	59	B.1.1.208	0.719512
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	58	58	B.1	0.000531
ORF1ab/nsp14A2-B	445	F445del	TTC	---	49	49	AY.44	0.000298
ORF1ab/nsp14A2-B	445	F445del	TTC	---	48	48	B.1.1	0.000871
ORF1ab/nsp14A2-B	445	F445del	TTC	---	47	47	AY.25	0.000283
ORF1ab/nsp14A2-B	445	F445del	TTC	---	47	47	AY.75	0.002633
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	44	44	B.1.1.301	0.051887
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	39	39	AY.103	0.000242
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	39	39	AY.42	0.001569
ORF1ab/nsp14A2-B	445	F445del	TTC	---	38	38	AY.9.2	0.001396
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	38	38	B.1.177.73	0.021518
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	36	36	B.1.444	0.571429
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	35	35	AY.25	0.000211
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	34	34	AY.26	0.000963
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	34	34	W.4	0.045946
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	33	33	AY.39	0.000815
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	32	32	AY.61	0.003353
ORF1ab/nsp14A2-B	445	F445del	TTC	---	31	31	AY.3	0.000308
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	30	30	AY.47	0.000933
ORF1ab/nsp14A2-B	445	F445del	TTC	---	29	29	AY.103	0.00018
ORF1ab/nsp14A2-B	445	F445del	TTC	---	27	27	AY.39	0.000667
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	27	27	B.1.177	0.000356
ORF1ab/nsp14A2-B	445	F445del	TTC	---	26	26	AY.52	0.021173
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	25	25	AY.9.1	0.002093
ORF1ab/nsp14A2-B	445	F445del	TTC	---	24	24	B.1.596	0.002091
ORF1ab/nsp14A2-B	445	F445L	Ttc	Ctc	14	22	B.1.1.7	0.000013
ORF1ab/nsp14A2-B	445	F445L	ttC	ttA	5	22	B.1.1.7	0.000004
ORF1ab/nsp14A2-B	445	F445L	ttC	ttG	3	22	B.1.1.7	0.000003
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	21	21	B.1.258	0.001397
ORF1ab/nsp14A2-B	445	F445del	TTC	---	21	21	B.1.526	0.000494
ORF1ab/nsp14A2-B	445	F445del	TTC	---	20	20	AY.102	0.00053
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	19	19	B.1.349	0.013581
ORF1ab/nsp14A2-B	445	F445del	TTC	---	19	19	B.1.351	0.000565
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	19	19	C.16	0.020148
ORF1ab/nsp14A2-B	445	F445S	tTc	tCc	16	18	All	0.000003
ORF1ab/nsp14A2-B	445	F445S	tTC	tCT	2	18	All	0
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	17	17	AY.120	0.000632
ORF1ab/nsp14A2-B	445	F445del	TTC	---	17	17	AY.34.1	0.008669
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	17	17	AY.5	0.000351
ORF1ab/nsp14A2-B	445	F445V	Ttc	Gtc	16	16	All	0.000003
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	16	16	AY.102	0.000424
ORF1ab/nsp14A2-B	445	F445del	TTC	---	16	16	B.1.617.1	0.002063
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	15	15	AY.41	0.004409
ORF1ab/nsp14A2-B	445	F445del	TTC	---	15	15	AY.65	0.007996
ORF1ab/nsp14A2-B	445	F445del	TTC	---	15	15	B.1.177	0.000198
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	14	14	AY.9.2	0.000514
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	14	14	B.1.526	0.000329
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	13	13	AY.100	0.000598
ORF1ab/nsp14A2-B	445	F445del	TTC	---	13	13	AY.120	0.000483
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	13	13	B.1.517	0.005551
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	13	13	P.1.14	0.000621
ORF1ab/nsp14A2-B	445	F445C	tTc	tGc	12	12	All	0.000002
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	12	12	B.1.1.433	0.017094
ORF1ab/nsp14A2-B	445	F445del	TTC	---	12	12	B.1.429	0.000282
ORF1ab/nsp14A2-B	445	F445del	TTC	---	11	11	AY.119	0.000388
ORF1ab/nsp14A2-B	445	F445del	TTC	---	10	10	AY.118	0.000626
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	10	10	AY.98	0.00079
ORF1ab/nsp14A2-B	445	F445del	TTC	---	10	10	AY.98.1	0.000484
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	10	10	B.1.1.420	0.01006
ORF1ab/nsp14A2-B	445	F445del	TTC	---	10	10	B.1.243	0.000696
ORF1ab/nsp14A2-B	445	F445del2	TTC	--N	5	9	All	0.000001
ORF1ab/nsp14A2-B	445	F445del2	TTc	--c	2	9	All	0
ORF1ab/nsp14A2-B	445	F445del2	tTC	t--	2	9	All	0
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	9	9	AY.54	0.000858
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	9	9	AY.93	0.002458
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	9	9	AY.98.1	0.000436
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	9	9	B.1.1.221	0.090909
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	9	9	B.1.1.519	0.000357
ORF1ab/nsp14A2-B	445	F445del	TTC	---	9	9	B.1.576	0.00816
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	9	9	Q.8	0.001484
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	8	8	AY.118	0.000501
ORF1ab/nsp14A2-B	445	F445del	TTC	---	8	8	AY.3.1	0.000682
ORF1ab/nsp14A2-B	445	F445del	TTC	---	8	8	AY.40	0.007715
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	8	8	AY.99	0.008395
ORF1ab/nsp14A2-B	445	F445L	ttC	ttA	8	8	B.1	0.000073
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	8	8	B.1.427	0.000404
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	7	7	AY.24	0.003017
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	7	7	AY.29	0.00011
ORF1ab/nsp14A2-B	445	F445del	TTC	---	7	7	AY.5.3	0.002362
ORF1ab/nsp14A2-B	445	F445del	TTC	---	7	7	AY.5.4	0.001937
ORF1ab/nsp14A2-B	445	F445del	TTC	---	7	7	AY.75.1	0.001262
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	7	7	AY.99.2	0.000645
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	7	7	B.1.1.1	0.002287
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	7	7	B.1.1.25	0.00398
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	7	7	B.1.243	0.000487
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	7	7	B.1.311	0.001922
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	7	7	B.1.336	0.017073
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	7	7	B.1.416	0.008883
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	7	7	B.1.525	0.000792
ORF1ab/nsp14A2-B	445	F445del	TTC	---	6	6		0.333333
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	6	6	A.2.5	0.002994
ORF1ab/nsp14A2-B	445	F445del1	ttC	tt-	2	6	All	0
ORF1ab/nsp14A2-B	445	F445del1	TTC	-NN	2	6	All	0
ORF1ab/nsp14A2-B	445	F445del1	TtC	-tN	1	6	All	0
ORF1ab/nsp14A2-B	445	F445del1	Ttc	-tc	1	6	All	0
ORF1ab/nsp14A2-B	445	F445S	tTc	tCc	6	6	AY.102	0.000159
ORF1ab/nsp14A2-B	445	F445del	TTC	---	6	6	AY.13	0.000966
ORF1ab/nsp14A2-B	445	F445del	TTC	---	6	6	AY.4	0.000009
ORF1ab/nsp14A2-B	445	F445C	tTc	tGc	6	6	AY.4	0.000009
ORF1ab/nsp14A2-B	445	F445del	TTC	---	6	6	AY.42	0.000241
ORF1ab/nsp14A2-B	445	F445L	ttC	ttA	5	6	AY.43	0.000022
ORF1ab/nsp14A2-B	445	F445L	ttC	ttG	1	6	AY.43	0.000004
ORF1ab/nsp14A2-B	445	F445del	TTC	---	6	6	AY.55	0.005505
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	6	6	AY.6	0.000247
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	6	6	AY.75.1	0.001082
ORF1ab/nsp14A2-B	445	F445del	TTC	---	6	6	B.1.221	0.000426
ORF1ab/nsp14A2-B	445	F445del	TTC	---	6	6	B.1.265	0.007624
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	6	6	B.1.351	0.000178
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	6	6	B.1.596	0.000523
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	6	6	B.1.621	0.000531
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	6	6	C.18	0.015544
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	6	6	R.1	0.00054
ORF1ab/nsp14A2-B	445	F445I	Ttc	Atc	5	5	All	0.000001
ORF1ab/nsp14A2-B	445	F445del	TTC	---	5	5	AY.101	0.002452
ORF1ab/nsp14A2-B	445	F445del	TTC	---	5	5	AY.110	0.000563
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	5	5	AY.119	0.000177
ORF1ab/nsp14A2-B	445	F445del	TTC	---	5	5	AY.23	0.000349
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	5	5	AY.29.1	0.001103
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	5	5	AY.39.1	0.000198
ORF1ab/nsp14A2-B	445	F445del	TTC	---	5	5	AY.59	0.002648
ORF1ab/nsp14A2-B	445	F445del	TTC	---	5	5	B.1.1.37	0.000964
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	5	5	B.1.1.434	0.001743
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	5	5	B.1.110.3	0.003592
ORF1ab/nsp14A2-B	445	F445del	TTC	---	5	5	B.1.517	0.002135
ORF1ab/nsp14A2-B	445	F445L	ttC	ttA	3	5	B.1.617.2	0.000011
ORF1ab/nsp14A2-B	445	F445L	ttC	ttG	2	5	B.1.617.2	0.000008
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	5	5	B.1.623	0.002682
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	5	5	B.40	0.001821
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	5	5	C.37	0.00058
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	5	5	D.2	0.000375
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	5	5	N.5	0.008834
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	5	5	P.1.10	0.001347
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	5	5	P.1.15	0.001162
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	5	5	P.1.2	0.00578
ORF1ab/nsp14A2-B	445	F445del	TTC	---	4	4	AY.100	0.000184
ORF1ab/nsp14A2-B	445	F445del	TTC	---	4	4	AY.11	0.005355
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	4	4	AY.110	0.000451
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	4	4	AY.117	0.000338
ORF1ab/nsp14A2-B	445	F445del	TTC	---	4	4	AY.20	0.000155
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	4	4	AY.23	0.000279
ORF1ab/nsp14A2-B	445	F445del	TTC	---	4	4	AY.26	0.000113
ORF1ab/nsp14A2-B	445	F445del	TTC	---	4	4	AY.33	0.000267
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	4	4	AY.34	0.000388
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	4	4	AY.36	0.000593
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	4	4	AY.39.1.1	0.002899
ORF1ab/nsp14A2-B	445	F445V	Ttc	Gtc	4	4	AY.43	0.000018
ORF1ab/nsp14A2-B	445	F445del	TTC	---	4	4	B.1.1.218	0.030769
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	4	4	B.1.1.28	0.001245
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	4	4	B.1.1.294	0.005063
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	4	4	B.1.1.348	0.003185
ORF1ab/nsp14A2-B	445	F445del	TTC	---	4	4	B.1.160	0.000125
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	4	4	B.1.177.60	0.000874
ORF1ab/nsp14A2-B	445	F445V	Ttc	Gtc	4	4	B.1.258.17	0.000416
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	4	4	B.1.258.17	0.000416
ORF1ab/nsp14A2-B	445	F445del	TTC	---	4	4	B.1.260	0.013378
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	4	4	B.1.350	0.01173
ORF1ab/nsp14A2-B	445	F445del	TTC	---	4	4	B.1.36	0.000584
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	4	4	B.1.438.1	0.000429
ORF1ab/nsp14A2-B	445	F445del	TTC	---	4	4	B.1.568	0.004444
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	4	4	P.1.7	0.001277
ORF1ab/nsp14A2-B	445	F445Y	tTc	tAc	3	3	All	0.000001
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	3	3	AY.105	0.001929
ORF1ab/nsp14A2-B	445	F445del	TTC	---	3	3	AY.107	0.001398
ORF1ab/nsp14A2-B	445	F445del	TTC	---	3	3	AY.16.1	0.00141
ORF1ab/nsp14A2-B	445	F445L	ttC	ttA	2	3	AY.3	0.00002
ORF1ab/nsp14A2-B	445	F445L	ttC	ttG	1	3	AY.3	0.00001
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	3	3	AY.35	0.000699
ORF1ab/nsp14A2-B	445	F445S	tTc	tCc	3	3	AY.4	0.000005
ORF1ab/nsp14A2-B	445	F445L	ttC	ttA	2	3	AY.4	0.000003
ORF1ab/nsp14A2-B	445	F445L	Ttc	Ctc	1	3	AY.4	0.000002
ORF1ab/nsp14A2-B	445	F445del	TTC	---	3	3	AY.47	0.000093
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	3	3	AY.53	0.000863
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	3	3	AY.64	0.001786
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	3	3	AY.69	0.00056
ORF1ab/nsp14A2-B	445	F445del	TTC	---	3	3	B.1.1.174	0.010135
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	3	3	B.1.1.222	0.000612
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	3	3	B.1.1.311	0.001074
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	3	3	B.1.1.39	0.001529
ORF1ab/nsp14A2-B	445	F445del	TTC	---	3	3	B.1.1.416	0.002715
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	3	3	B.1.1.525	0.016393
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	3	3	B.1.119	0.031579
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	3	3	B.1.177.83	0.004444
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	3	3	B.1.221	0.000213
ORF1ab/nsp14A2-B	445	F445del	TTC	---	3	3	B.1.349	0.002144
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	3	3	B.1.351.2	0.000908
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	3	3	B.1.36.17	0.001482
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	3	3	B.1.36.18	0.001261
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	3	3	B.1.362	0.004622
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	3	3	B.1.466.2	0.001174
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	3	3	B.1.499	0.003151
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	3	3	B.1.565	0.002431
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	3	3	B.1.587	0.005693
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	3	3	B.1.617.1	0.000387
ORF1ab/nsp14A2-B	445	F445del	TTC	---	3	3	P.1.15	0.000697
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	3	3	P.1.6	0.005837
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	2	2	A.3	0.004193
ORF1ab/nsp14A2-B	445	F445del	TTC	---	2	2	AY.105	0.001286
ORF1ab/nsp14A2-B	445	F445del	TTC	---	2	2	AY.106	0.00067
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	2	2	AY.13	0.000322
ORF1ab/nsp14A2-B	445	F445del	TTC	---	2	2	AY.21	0.003795
ORF1ab/nsp14A2-B	445	F445L	ttC	ttA	1	2	AY.23	0.00007
ORF1ab/nsp14A2-B	445	F445L	Ttc	Ctc	1	2	AY.23	0.00007
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	2	2	AY.30	0.000791
ORF1ab/nsp14A2-B	445	F445del	TTC	---	2	2	AY.30	0.000791
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	2	2	AY.32	0.001065
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	2	2	AY.34.1	0.00102
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	2	2	AY.37	0.000632
ORF1ab/nsp14A2-B	445	F445del	TTC	---	2	2	AY.39.1	0.000079
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	2	2	AY.4.2	0.000043
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	2	2	AY.4.5	0.000215
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	2	2	AY.45	0.000243
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	2	2	AY.46	0.000208
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	2	2	AY.46.4	0.000329
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	2	2	AY.46.6	0.000144
ORF1ab/nsp14A2-B	445	F445del	TTC	---	2	2	AY.46.6	0.000144
ORF1ab/nsp14A2-B	445	F445del	TTC	---	2	2	AY.5	0.000041
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	2	2	AY.56	0.00321
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	2	2	AY.57	0.001312
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	2	2	AY.59	0.001059
ORF1ab/nsp14A2-B	445	F445del	TTC	---	2	2	AY.67	0.000929
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	2	2	AY.70	0.000417
ORF1ab/nsp14A2-B	445	F445del	TTC	---	2	2	AY.84	0.000875
ORF1ab/nsp14A2-B	445	F445del	TTC	---	2	2	AY.85	0.000854
ORF1ab/nsp14A2-B	445	F445del	TTC	---	2	2	AY.87	0.001665
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	2	2	AY.88	0.001768
ORF1ab/nsp14A2-B	445	F445del	TTC	---	2	2	AY.9.1	0.000167
ORF1ab/nsp14A2-B	445	F445del	TTC	---	2	2	AY.97	0.003401
ORF1ab/nsp14A2-B	445	F445del	TTC	---	2	2	B	0.000256
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	2	2	B.1.1.170	0.002494
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	2	2	B.1.1.203	0.033898
ORF1ab/nsp14A2-B	445	F445del	TTC	---	2	2	B.1.1.207	0.002364
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	2	2	B.1.1.214	0.000111
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	2	2	B.1.1.220	0.003717
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	2	2	B.1.1.229	0.011494
ORF1ab/nsp14A2-B	445	F445del	TTC	---	2	2	B.1.1.277	0.001517
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	2	2	B.1.1.284	0.000215
ORF1ab/nsp14A2-B	445	F445del	TTC	---	2	2	B.1.1.306	0.000877
ORF1ab/nsp14A2-B	445	F445del	TTC	---	2	2	B.1.1.320	0.036364
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	2	2	B.1.1.322	0.017544
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	2	2	B.1.1.33	0.000842
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	2	2	B.1.1.377	0.002762
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	2	2	B.1.1.398	0.006452
ORF1ab/nsp14A2-B	445	F445del	TTC	---	2	2	B.1.1.409	0.005666
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	2	2	B.1.1.416	0.00181
ORF1ab/nsp14A2-B	445	F445del	TTC	---	2	2	B.1.1.434	0.000697
ORF1ab/nsp14A2-B	445	F445del	TTC	---	2	2	B.1.1.519	0.000079
ORF1ab/nsp14A2-B	445	F445S	tTc	tCc	2	2	B.1.1.7	0.000002
ORF1ab/nsp14A2-B	445	F445del	TTC	---	2	2	B.1.110.3	0.001437
ORF1ab/nsp14A2-B	445	F445L	Ttc	Ctc	1	2	B.1.177	0.000013
ORF1ab/nsp14A2-B	445	F445L	ttC	ttA	1	2	B.1.177	0.000013
ORF1ab/nsp14A2-B	445	F445del	TTC	---	2	2	B.1.177.62	0.002384
ORF1ab/nsp14A2-B	445	F445del	TTC	---	2	2	B.1.234	0.000264
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	2	2	B.1.240	0.000431
ORF1ab/nsp14A2-B	445	F445L	ttC	ttA	2	2	B.1.258	0.000133
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	2	2	B.1.258.3	0.00335
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	2	2	B.1.36	0.000292
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	2	2	B.1.369	0.00057
ORF1ab/nsp14A2-B	445	F445del	TTC	---	2	2	B.1.375	0.001639
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	2	2	B.1.396	0.001411
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	2	2	B.1.409	0.001563
ORF1ab/nsp14A2-B	445	F445del	TTC	---	2	2	B.1.416.1	0.003125
ORF1ab/nsp14A2-B	445	F445del	TTC	---	2	2	B.1.427	0.000101
ORF1ab/nsp14A2-B	445	F445L	Ttc	Ctc	2	2	B.1.497	0.00063
ORF1ab/nsp14A2-B	445	F445del	TTC	---	2	2	B.1.533	0.019231
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	2	2	B.1.564	0.000852
ORF1ab/nsp14A2-B	445	F445del	TTC	---	2	2	B.1.575	0.000607
ORF1ab/nsp14A2-B	445	F445del	TTC	---	2	2	B.1.595	0.000522
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	2	2	B.1.637	0.000146
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	2	2	B.29	0.007018
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	2	2	B.6	0.00182
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	2	2	C.23	0.011628
ORF1ab/nsp14A2-B	445	F445del	TTC	---	2	2	P.1	0.000032
ORF1ab/nsp14A2-B	445	F445del	TTC	---	2	2	P.2	0.000373
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	2	2	Q.3	0.00029
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	1	1		0.055556
ORF1ab/nsp14A2-B	445	F445L	ttC	ttG	1	1		0.055556
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	1	1	A.2	0.000662
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	1	1	AD.2	0.000219
ORF1ab/nsp14A2-B	445	F445del	TTC	---	1	1	AD.2	0.000219
ORF1ab/nsp14A2-B	445	F445P	TTc	CCc	1	1	All	0
ORF1ab/nsp14A2-B	445	F445X	tTC	tAG	1	1	All	0
ORF1ab/nsp14A2-B	445	F445V	Ttc	Gtc	1	1	AY.102	0.000027
ORF1ab/nsp14A2-B	445	F445C	tTc	tGc	1	1	AY.102	0.000027
ORF1ab/nsp14A2-B	445	F445L	Ttc	Ctc	1	1	AY.103	0.000006
ORF1ab/nsp14A2-B	445	F445del	TTC	---	1	1	AY.108	0.001103
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	1	1	AY.109	0.00074
ORF1ab/nsp14A2-B	445	F445L	TtC	CtT	1	1	AY.110	0.000113
ORF1ab/nsp14A2-B	445	F445del	TTC	---	1	1	AY.113	0.000142
ORF1ab/nsp14A2-B	445	F445del	TTC	---	1	1	AY.114	0.000231
ORF1ab/nsp14A2-B	445	F445del	TTC	---	1	1	AY.116	0.000287
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	1	1	AY.116	0.000287
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	1	1	AY.116.1	0.000311
ORF1ab/nsp14A2-B	445	F445del	TTC	---	1	1	AY.117	0.000085
ORF1ab/nsp14A2-B	445	F445L	Ttc	Ctc	1	1	AY.119	0.000035
ORF1ab/nsp14A2-B	445	F445del	TTC	---	1	1	AY.120.2	0.001285
ORF1ab/nsp14A2-B	445	F445del	TTC	---	1	1	AY.121	0.000135
ORF1ab/nsp14A2-B	445	F445del	TTC	---	1	1	AY.16	0.00038
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	1	1	AY.16	0.00038
ORF1ab/nsp14A2-B	445	F445S	tTc	tCc	1	1	AY.20	0.000039
ORF1ab/nsp14A2-B	445	F445del1	ttC	tt-	1	1	AY.20	0.000039
ORF1ab/nsp14A2-B	445	F445L	Ttc	Ctc	1	1	AY.20	0.000039
ORF1ab/nsp14A2-B	445	F445del2	TTC	--N	1	1	AY.25	0.000006
ORF1ab/nsp14A2-B	445	F445del	TTC	---	1	1	AY.29	0.000016
ORF1ab/nsp14A2-B	445	F445Y	tTc	tAc	1	1	AY.29	0.000016
ORF1ab/nsp14A2-B	445	F445del	TTC	---	1	1	AY.29.1	0.000221
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	1	1	AY.3.1	0.000085
ORF1ab/nsp14A2-B	445	F445L	Ttc	Ctc	1	1	AY.34	0.000097
ORF1ab/nsp14A2-B	445	F445del	TTC	---	1	1	AY.34	0.000097
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	1	1	AY.38	0.000499
ORF1ab/nsp14A2-B	445	F445L	ttC	ttA	1	1	AY.39	0.000025
ORF1ab/nsp14A2-B	445	F445V	Ttc	Gtc	1	1	AY.4	0.000002
ORF1ab/nsp14A2-B	445	F445Y	tTc	tAc	1	1	AY.4	0.000002
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	1	1	AY.4.2.1	0.000149
ORF1ab/nsp14A2-B	445	F445del	TTC	---	1	1	AY.4.5	0.000107
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	1	1	AY.40	0.000964
ORF1ab/nsp14A2-B	445	F445L	ttC	ttG	1	1	AY.42	0.00004
ORF1ab/nsp14A2-B	445	F445V	Ttc	Gtc	1	1	AY.42	0.00004
ORF1ab/nsp14A2-B	445	F445del1	ttC	tt-	1	1	AY.43	0.000004
ORF1ab/nsp14A2-B	445	F445I	Ttc	Atc	1	1	AY.44	0.000006
ORF1ab/nsp14A2-B	445	F445L	Ttc	Ctc	1	1	AY.44	0.000006
ORF1ab/nsp14A2-B	445	F445del	TTC	---	1	1	AY.45	0.000122
ORF1ab/nsp14A2-B	445	F445del	TTC	---	1	1	AY.46	0.000104
ORF1ab/nsp14A2-B	445	F445del	TTC	---	1	1	AY.46.2	0.000635
ORF1ab/nsp14A2-B	445	F445L	Ttc	Ctc	1	1	AY.5	0.000021
ORF1ab/nsp14A2-B	445	F445del2	TTC	--N	1	1	AY.5.4	0.000277
ORF1ab/nsp14A2-B	445	F445C	tTc	tGc	1	1	AY.52	0.000814
ORF1ab/nsp14A2-B	445	F445del	TTC	---	1	1	AY.53	0.000288
ORF1ab/nsp14A2-B	445	F445del	TTC	---	1	1	AY.54	0.000095
ORF1ab/nsp14A2-B	445	F445del	TTC	---	1	1	AY.56	0.001605
ORF1ab/nsp14A2-B	445	F445del	TTC	---	1	1	AY.61	0.000105
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	1	1	AY.63	0.000387
ORF1ab/nsp14A2-B	445	F445del	TTC	---	1	1	AY.64	0.000595
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	1	1	AY.66	0.00107
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	1	1	AY.68	0.000274
ORF1ab/nsp14A2-B	445	F445del	TTC	---	1	1	AY.68	0.000274
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	1	1	AY.7	0.000196
ORF1ab/nsp14A2-B	445	F445del	TTC	---	1	1	AY.7.2	0.000559
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	1	1	AY.71	0.000475
ORF1ab/nsp14A2-B	445	F445del	TTC	---	1	1	AY.71	0.000475
ORF1ab/nsp14A2-B	445	F445L	ttC	ttA	1	1	AY.75	0.000056
ORF1ab/nsp14A2-B	445	F445del	TTC	---	1	1	AY.77	0.001127
ORF1ab/nsp14A2-B	445	F445del	TTC	---	1	1	AY.78	0.001541
ORF1ab/nsp14A2-B	445	F445S	tTC	tCT	1	1	AY.79	0.001211
ORF1ab/nsp14A2-B	445	F445L	ttC	ttG	1	1	AY.79	0.001211
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	1	1	AY.9	0.000068
ORF1ab/nsp14A2-B	445	F445L	ttC	ttA	1	1	AY.9.1	0.000084
ORF1ab/nsp14A2-B	445	F445L	ttC	ttA	1	1	AY.9.2	0.000037
ORF1ab/nsp14A2-B	445	F445del2	tTC	t--	1	1	AY.9.2	0.000037
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	1	1	AY.92	0.000287
ORF1ab/nsp14A2-B	445	F445del	TTC	---	1	1	AY.94	0.000443
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	1	1	AY.94	0.000443
ORF1ab/nsp14A2-B	445	F445del	TTC	---	1	1	AY.99	0.001049
ORF1ab/nsp14A2-B	445	F445del	TTC	---	1	1	AY.99.2	0.000092
ORF1ab/nsp14A2-B	445	F445del	TTC	---	1	1	AZ.3	0.00152
ORF1ab/nsp14A2-B	445	F445V	Ttc	Gtc	1	1	B	0.000128
ORF1ab/nsp14A2-B	445	F445S	tTc	tCc	1	1	B	0.000128
ORF1ab/nsp14A2-B	445	F445X	tTC	tAG	1	1	B.1	0.000009
ORF1ab/nsp14A2-B	445	F445del2	TTC	--N	1	1	B.1.1	0.000018
ORF1ab/nsp14A2-B	445	F445del1	TtC	-tN	1	1	B.1.1	0.000018
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	1	1	B.1.1.133	0.008475
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	1	1	B.1.1.141	0.002012
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	1	1	B.1.1.171	0.003676
ORF1ab/nsp14A2-B	445	F445del	TTC	---	1	1	B.1.1.192	0.002309
ORF1ab/nsp14A2-B	445	F445del	TTC	---	1	1	B.1.1.194	0.00495
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	1	1	B.1.1.205	0.003717
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	1	1	B.1.1.236	0.006897
ORF1ab/nsp14A2-B	445	F445del	TTC	---	1	1	B.1.1.269	0.001353
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	1	1	B.1.1.277	0.000759
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	1	1	B.1.1.286	0.002899
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	1	1	B.1.1.291	0.000742
ORF1ab/nsp14A2-B	445	F445C	tTc	tGc	1	1	B.1.1.303	0.002762
ORF1ab/nsp14A2-B	445	F445del	TTC	---	1	1	B.1.1.305	0.003861
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	1	1	B.1.1.306	0.000438
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	1	1	B.1.1.309	0.005848
ORF1ab/nsp14A2-B	445	F445del	TTC	---	1	1	B.1.1.311	0.000358
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	1	1	B.1.1.316	0.000925
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	1	1	B.1.1.317	0.000412
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	1	1	B.1.1.318	0.000302
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	1	1	B.1.1.340	0.045455
ORF1ab/nsp14A2-B	445	F445del	TTC	---	1	1	B.1.1.348	0.000796
ORF1ab/nsp14A2-B	445	F445L	Ttc	Ctc	1	1	B.1.1.354	0.004386
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	1	1	B.1.1.354	0.004386
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	1	1	B.1.1.372	0.000689
ORF1ab/nsp14A2-B	445	F445C	tTc	tGc	1	1	B.1.1.378	0.007299
ORF1ab/nsp14A2-B	445	F445L	Ttc	Ctc	1	1	B.1.1.411	0.014706
ORF1ab/nsp14A2-B	445	F445del	TTC	---	1	1	B.1.1.411	0.014706
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	1	1	B.1.1.419	0.007407
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	1	1	B.1.1.432	0.001266
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	1	1	B.1.1.44	0.00241
ORF1ab/nsp14A2-B	445	F445del	TTC	---	1	1	B.1.1.448	0.002033
ORF1ab/nsp14A2-B	445	F445del	TTC	---	1	1	B.1.1.46	0.004367
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	1	1	B.1.1.464	0.001473
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	1	1	B.1.1.61	0.008772
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	1	1	B.1.1.63	0.000386
ORF1ab/nsp14A2-B	445	F445I	Ttc	Atc	1	1	B.1.1.7	0.000001
ORF1ab/nsp14A2-B	445	F445del2	TTc	--c	1	1	B.1.1.7	0.000001
ORF1ab/nsp14A2-B	445	F445V	Ttc	Gtc	1	1	B.1.1.7	0.000001
ORF1ab/nsp14A2-B	445	F445del	TTC	---	1	1	B.1.1.70	0.000341
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	1	1	B.1.1.71	0.006061
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	1	1	B.1.115	0.021739
ORF1ab/nsp14A2-B	445	F445L	ttC	ttA	1	1	B.1.146	0.004237
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	1	1	B.1.146	0.004237
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	1	1	B.1.147	0.000756
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	1	1	B.1.158	0.02381
ORF1ab/nsp14A2-B	445	F445del1	Ttc	-tc	1	1	B.1.160	0.000031
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	1	1	B.1.160.16	0.000929
ORF1ab/nsp14A2-B	445	F445I	Ttc	Atc	1	1	B.1.160.24	0.004425
ORF1ab/nsp14A2-B	445	F445del	TTC	---	1	1	B.1.177.16	0.000664
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	1	1	B.1.177.16	0.000664
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	1	1	B.1.177.19	0.001431
ORF1ab/nsp14A2-B	445	F445del	TTC	---	1	1	B.1.177.19	0.001431
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	1	1	B.1.177.45	0.000381
ORF1ab/nsp14A2-B	445	F445del	TTC	---	1	1	B.1.177.48	0.003125
ORF1ab/nsp14A2-B	445	F445del	TTC	---	1	1	B.1.177.50	0.004695
ORF1ab/nsp14A2-B	445	F445del	TTC	---	1	1	B.1.177.56	0.000668
ORF1ab/nsp14A2-B	445	F445del	TTC	---	1	1	B.1.177.63	0.002703
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	1	1	B.1.177.65	0.000665
ORF1ab/nsp14A2-B	445	F445del	TTC	---	1	1	B.1.177.68	0.015152
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	1	1	B.1.177.69	0.001484
ORF1ab/nsp14A2-B	445	F445del	TTC	---	1	1	B.1.177.69	0.001484
ORF1ab/nsp14A2-B	445	F445del	TTC	---	1	1	B.1.177.73	0.000566
ORF1ab/nsp14A2-B	445	F445del	TTC	---	1	1	B.1.177.75	0.001041
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	1	1	B.1.177.82	0.000477
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	1	1	B.1.177.86	0.000183
ORF1ab/nsp14A2-B	445	F445del2	TTC	--N	1	1	B.1.2	0.000009
ORF1ab/nsp14A2-B	445	F445V	Ttc	Gtc	1	1	B.1.2	0.000009
ORF1ab/nsp14A2-B	445	F445C	tTc	tGc	1	1	B.1.2	0.000009
ORF1ab/nsp14A2-B	445	F445del1	TTC	-NN	1	1	B.1.2	0.000009
ORF1ab/nsp14A2-B	445	F445L	Ttc	Ctc	1	1	B.1.221	0.000071
ORF1ab/nsp14A2-B	445	F445S	tTc	tCc	1	1	B.1.221	0.000071
ORF1ab/nsp14A2-B	445	F445P	TTc	CCc	1	1	B.1.221	0.000071
ORF1ab/nsp14A2-B	445	F445del	TTC	---	1	1	B.1.221.1	0.002907
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	1	1	B.1.221.3	0.000833
ORF1ab/nsp14A2-B	445	F445Y	tTc	tAc	1	1	B.1.243	0.00007
ORF1ab/nsp14A2-B	445	F445del2	TTC	--N	1	1	B.1.243	0.00007
ORF1ab/nsp14A2-B	445	F445L	Ttc	Ctc	1	1	B.1.243	0.00007
ORF1ab/nsp14A2-B	445	F445del	TTC	---	1	1	B.1.258	0.000067
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	1	1	B.1.258.11	0.000396
ORF1ab/nsp14A2-B	445	F445L	ttC	ttA	1	1	B.1.258.14	0.00098
ORF1ab/nsp14A2-B	445	F445del	TTC	---	1	1	B.1.284	0.013158
ORF1ab/nsp14A2-B	445	F445del	TTC	---	1	1	B.1.291	0.019231
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	1	1	B.1.332	0.003497
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	1	1	B.1.35	0.008475
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	1	1	B.1.36.26	0.002857
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	1	1	B.1.36.29	0.000517
ORF1ab/nsp14A2-B	445	F445del	TTC	---	1	1	B.1.36.31	0.001751
ORF1ab/nsp14A2-B	445	F445del	TTC	---	1	1	B.1.36.35	0.002604
ORF1ab/nsp14A2-B	445	F445del	TTC	---	1	1	B.1.36.8	0.001
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	1	1	B.1.361	0.001289
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	1	1	B.1.366	0.004878
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	1	1	B.1.367	0.000792
ORF1ab/nsp14A2-B	445	F445I	Ttc	Atc	1	1	B.1.371	0.001122
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	1	1	B.1.375	0.00082
ORF1ab/nsp14A2-B	445	F445del	TTC	---	1	1	B.1.395	0.007042
ORF1ab/nsp14A2-B	445	F445del	TTC	---	1	1	B.1.409	0.000781
ORF1ab/nsp14A2-B	445	F445del	TTC	---	1	1	B.1.411	0.003704
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	1	1	B.1.411	0.003704
ORF1ab/nsp14A2-B	445	F445del	TTC	---	1	1	B.1.425	0.002994
ORF1ab/nsp14A2-B	445	F445del	TTC	---	1	1	B.1.433	0.003195
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	1	1	B.1.436	0.001029
ORF1ab/nsp14A2-B	445	F445del	TTC	---	1	1	B.1.439	0.005917
ORF1ab/nsp14A2-B	445	F445del	TTC	---	1	1	B.1.456	0.003268
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	1	1	B.1.468	0.005714
ORF1ab/nsp14A2-B	445	F445del	TTC	---	1	1	B.1.471	0.002732
ORF1ab/nsp14A2-B	445	F445S	tTc	tCc	1	1	B.1.497	0.000315
ORF1ab/nsp14A2-B	445	F445V	Ttc	Gtc	1	1	B.1.497	0.000315
ORF1ab/nsp14A2-B	445	F445del1	TTC	-NN	1	1	B.1.526	0.000024
ORF1ab/nsp14A2-B	445	F445L	Ttc	Ctc	1	1	B.1.526	0.000024
ORF1ab/nsp14A2-B	445	F445del	TTC	---	1	1	B.1.537	0.02
ORF1ab/nsp14A2-B	445	F445del2	tTC	t--	1	1	B.1.546	0.003704
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	1	1	B.1.549	0.007194
ORF1ab/nsp14A2-B	445	F445del	TTC	---	1	1	B.1.551	0.00129
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	1	1	B.1.571	0.009709
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	1	1	B.1.575	0.000303
ORF1ab/nsp14A2-B	445	F445del	TTC	---	1	1	B.1.582	0.000491
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	1	1	B.1.595	0.000261
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	1	1	B.1.597	0.00463
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	1	1	B.1.609	0.000479
ORF1ab/nsp14A2-B	445	F445del2	TTc	--c	1	1	B.1.617.2	0.000004
ORF1ab/nsp14A2-B	445	F445V	Ttc	Gtc	1	1	B.1.617.2	0.000004
ORF1ab/nsp14A2-B	445	F445C	tTc	tGc	1	1	B.1.617.2	0.000004
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	1	1	B.1.619	0.000871
ORF1ab/nsp14A2-B	445	F445del	TTC	---	1	1	B.1.621	0.000089
ORF1ab/nsp14A2-B	445	F445I	Ttc	Atc	1	1	B.1.621	0.000089
ORF1ab/nsp14A2-B	445	F445S	tTc	tCc	1	1	B.1.621.1	0.000506
ORF1ab/nsp14A2-B	445	F445del	TTC	---	1	1	B.1.623	0.000536
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	1	1	B.1.627	0.00202
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	1	1	B.1.628	0.000352
ORF1ab/nsp14A2-B	445	F445del	TTC	---	1	1	B.1.633	0.041667
ORF1ab/nsp14A2-B	445	F445del	TTC	---	1	1	B.1.9.5	0.005682
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	1	1	B.3	0.000831
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	1	1	B.39	0.002331
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	1	1	B.4.7	0.010101
ORF1ab/nsp14A2-B	445	F445del	TTC	---	1	1	B.40	0.000364
ORF1ab/nsp14A2-B	445	F445S	tTC	tCT	1	1	B.6.6	0.000889
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	1	1	C.35	0.000774
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	1	1	C.36.3	0.000567
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	1	1	C.38	0.008065
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	1	1	C.39	0.018868
ORF1ab/nsp14A2-B	445	F445del	TTC	---	1	1	C.5	0.090909
ORF1ab/nsp14A2-B	445	F445L	ttC	ttA	1	1	D.2	0.000075
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	1	1	N.4	0.004255
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	1	1	N.6	0.007092
ORF1ab/nsp14A2-B	445	F445del	TTC	---	1	1	P.1.10	0.000269
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	1	1	P.1.4	0.000977
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	1	1	P.3	0.001595
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	1	1	P.7	0.004367
ORF1ab/nsp14A2-B	445	F445del	TTC	---	1	1	Q.1	0.000126
ORF1ab/nsp14A2-B	445	F445F	ttC	ttT	1	1	Q.4	0.000455
ORF1ab/nsp14A2-B	445	F445del	TTC	---	1	1	R.1	0.00009
ORF1ab/nsp14A2-B	445	F445del	TTC	---	1	1	W.1	0.008696

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.