CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp14A2-B : CodonNum = 443

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF1ab/nsp14A2-B	443	P443S	P6368S	nonsyn	Cca	Tca	2595	2595	1	19366-19368
ORF1ab/nsp14A2-B	443	P443del	P6368del	del	CCA	---	1603	1603	1	19366-19368
ORF1ab/nsp14A2-B	443	P443L	P6368L	nonsyn	cCa	cTa	454	453	0.997797	19366-19368
ORF1ab/nsp14A2-B	443	P443L	P6368L	nonsyn	cCA	cTG	454	1	0.00220264	19366-19368
ORF1ab/nsp14A2-B	443	P443P	P6368P	syn	ccA	ccG	421	353	0.83848	19366-19368
ORF1ab/nsp14A2-B	443	P443P	P6368P	syn	ccA	ccT	421	47	0.111639	19366-19368
ORF1ab/nsp14A2-B	443	P443P	P6368P	syn	ccA	ccC	421	21	0.0498812	19366-19368
ORF1ab/nsp14A2-B	443	P443Q	P6368Q	nonsyn	cCa	cAa	38	38	1	19366-19368
ORF1ab/nsp14A2-B	443	P443T	P6368T	nonsyn	Cca	Aca	36	35	0.972222	19366-19368
ORF1ab/nsp14A2-B	443	P443T	P6368T	nonsyn	CcA	AcG	36	1	0.0277778	19366-19368
ORF1ab/nsp14A2-B	443	P443R	P6368R	nonsyn	cCa	cGa	24	23	0.958333	19366-19368
ORF1ab/nsp14A2-B	443	P443R	P6368R	nonsyn	CCa	AGa	24	1	0.0416667	19366-19368
ORF1ab/nsp14A2-B	443	P443del1	P6368del1	del	Cca	-ca	6	3	0.5	19366-19368
ORF1ab/nsp14A2-B	443	P443del1	P6368del1	del	CCA	-NN	6	3	0.5	19366-19368
ORF1ab/nsp14A2-B	443	P443A	P6368A	nonsyn	Cca	Gca	5	4	0.8	19366-19368
ORF1ab/nsp14A2-B	443	P443A	P6368A	nonsyn	CcA	GcG	5	1	0.2	19366-19368
ORF1ab/nsp14A2-B	443	P443del2	P6368del2	del	CCa	--a	3	3	1	19366-19368
ORF1ab/nsp14A2-B	443	P443K	P6368K	nonsyn	CCa	AAa	1	1	1	19366-19368
ORF1ab/nsp14A2-B	443	P443X	P6368X	nonsyn	CCa	TGa	1	1	1	19366-19368
ORF1ab/nsp14A2-B	443	P443M	P6368M	nonsyn	CCA	ATG	1	1	1	19366-19368
ORF1ab/nsp14A2-B	443	P443I	P6368I	nonsyn	CCa	ATa	1	1	1	19366-19368
ORF1ab/nsp14A2-B	443	P443Y	P6368Y	nonsyn	CCA	TAT	1	1	1	19366-19368

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	2595	2595	All	0.000496
ORF1ab/nsp14A2-B	443	P443del	CCA	---	1603	1603	All	0.000307
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	1327	1327	B.1.1.7	0.001188
ORF1ab/nsp14A2-B	443	P443L	cCa	cTa	453	454	All	0.000087
ORF1ab/nsp14A2-B	443	P443L	cCA	cTG	1	454	All	0
ORF1ab/nsp14A2-B	443	P443P	ccA	ccG	353	421	All	0.000068
ORF1ab/nsp14A2-B	443	P443P	ccA	ccT	47	421	All	0.000009
ORF1ab/nsp14A2-B	443	P443P	ccA	ccC	21	421	All	0.000004
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	301	301	P.1	0.004742
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	207	207	AY.42	0.008328
ORF1ab/nsp14A2-B	443	P443del	CCA	---	183	183	AY.43	0.000811
ORF1ab/nsp14A2-B	443	P443P	ccA	ccG	135	164	B.1.1.7	0.000121
ORF1ab/nsp14A2-B	443	P443P	ccA	ccC	18	164	B.1.1.7	0.000016
ORF1ab/nsp14A2-B	443	P443P	ccA	ccT	11	164	B.1.1.7	0.00001
ORF1ab/nsp14A2-B	443	P443del	CCA	---	160	160	B.1.2	0.001409
ORF1ab/nsp14A2-B	443	P443del	CCA	---	149	149	B.1.617.2	0.000561
ORF1ab/nsp14A2-B	443	P443del	CCA	---	112	112	B.1	0.001026
ORF1ab/nsp14A2-B	443	P443del	CCA	---	109	109	B.1.1.7	0.000098
ORF1ab/nsp14A2-B	443	P443L	cCa	cTa	99	99	B.1.1.7	0.000089
ORF1ab/nsp14A2-B	443	P443P	ccA	ccG	79	80	AY.4	0.000123
ORF1ab/nsp14A2-B	443	P443P	ccA	ccT	1	80	AY.4	0.000002
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	79	79	AY.4	0.000123
ORF1ab/nsp14A2-B	443	P443del	CCA	---	50	50	B.1.1	0.000907
ORF1ab/nsp14A2-B	443	P443del	CCA	---	49	49	AY.25	0.000295
ORF1ab/nsp14A2-B	443	P443del	CCA	---	49	49	AY.44	0.000298
ORF1ab/nsp14A2-B	443	P443del	CCA	---	47	47	AY.75	0.002633
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	43	43	B.1.617.2	0.000162
ORF1ab/nsp14A2-B	443	P443L	cCa	cTa	39	39	AY.103	0.000242
ORF1ab/nsp14A2-B	443	P443del	CCA	---	39	39	AY.9.2	0.001432
ORF1ab/nsp14A2-B	443	P443Q	cCa	cAa	38	38	All	0.000007
ORF1ab/nsp14A2-B	443	P443T	Cca	Aca	35	36	All	0.000007
ORF1ab/nsp14A2-B	443	P443T	CcA	AcG	1	36	All	0
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	34	34	B.1.177.86	0.006237
ORF1ab/nsp14A2-B	443	P443P	ccA	ccG	32	32	AY.3	0.000318
ORF1ab/nsp14A2-B	443	P443del	CCA	---	32	32	AY.3	0.000318
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	31	31	B.1.1	0.000562
ORF1ab/nsp14A2-B	443	P443L	cCa	cTa	30	30	B.1.617.2	0.000113
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	29	29	AY.103	0.00018
ORF1ab/nsp14A2-B	443	P443del	CCA	---	29	29	AY.103	0.00018
ORF1ab/nsp14A2-B	443	P443del	CCA	---	27	27	AY.39	0.000667
ORF1ab/nsp14A2-B	443	P443del	CCA	---	26	26	AY.52	0.021173
ORF1ab/nsp14A2-B	443	P443L	cCa	cTa	25	25	AY.4	0.000039
ORF1ab/nsp14A2-B	443	P443R	cCa	cGa	23	24	All	0.000004
ORF1ab/nsp14A2-B	443	P443R	CCa	AGa	1	24	All	0
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	24	24	AY.6	0.000987
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	24	24	B.1.2	0.000211
ORF1ab/nsp14A2-B	443	P443del	CCA	---	24	24	B.1.596	0.002091
ORF1ab/nsp14A2-B	443	P443L	cCa	cTa	23	23	B.1.478	0.270588
ORF1ab/nsp14A2-B	443	P443del	CCA	---	23	23	B.1.526	0.000541
ORF1ab/nsp14A2-B	443	P443P	ccA	ccG	20	22	AY.103	0.000124
ORF1ab/nsp14A2-B	443	P443P	ccA	ccT	2	22	AY.103	0.000012
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	22	22	AY.14	0.001936
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	22	22	B.1.177.60	0.004806
ORF1ab/nsp14A2-B	443	P443L	cCa	cTa	21	21	B.1.1.176	0.009227
ORF1ab/nsp14A2-B	443	P443del	CCA	---	20	20	AY.102	0.00053
ORF1ab/nsp14A2-B	443	P443R	cCa	cGa	20	20	AY.103	0.000124
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	20	20	AY.25	0.00012
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	20	20	B.1	0.000183
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	19	19	AY.3	0.000189
ORF1ab/nsp14A2-B	443	P443del	CCA	---	19	19	B.1.351	0.000565
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	18	18	AY.44	0.00011
ORF1ab/nsp14A2-B	443	P443del	CCA	---	17	17	AY.34.1	0.008669
ORF1ab/nsp14A2-B	443	P443L	cCa	cTa	17	17	AY.43	0.000075
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	17	17	B.1.429	0.0004
ORF1ab/nsp14A2-B	443	P443P	ccA	ccG	17	17	B.1.617.2	0.000064
ORF1ab/nsp14A2-B	443	P443del	CCA	---	16	16	B.1.177	0.000211
ORF1ab/nsp14A2-B	443	P443del	CCA	---	16	16	B.1.617.1	0.002063
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	15	15	A.2	0.009927
ORF1ab/nsp14A2-B	443	P443del	CCA	---	15	15	AY.65	0.007996
ORF1ab/nsp14A2-B	443	P443L	cCa	cTa	15	15	B.1.429	0.000353
ORF1ab/nsp14A2-B	443	P443L	cCa	cTa	15	15	P.1	0.000236
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	14	14	B	0.001789
ORF1ab/nsp14A2-B	443	P443L	cCa	cTa	14	14	B.1	0.000128
ORF1ab/nsp14A2-B	443	P443L	cCa	cTa	14	14	B.1.177	0.000184
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	13	13	AY.100	0.000598
ORF1ab/nsp14A2-B	443	P443del	CCA	---	13	13	AY.120	0.000483
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	12	12	B.1.1.255	0.036364
ORF1ab/nsp14A2-B	443	P443del	CCA	---	12	12	B.1.429	0.000282
ORF1ab/nsp14A2-B	443	P443del	CCA	---	11	11	AY.119	0.000388
ORF1ab/nsp14A2-B	443	P443del	CCA	---	11	11	B.1.243	0.000765
ORF1ab/nsp14A2-B	443	P443del	CCA	---	10	10	AY.118	0.000626
ORF1ab/nsp14A2-B	443	P443P	ccA	ccT	9	10	AY.33	0.000601
ORF1ab/nsp14A2-B	443	P443P	ccA	ccG	1	10	AY.33	0.000067
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	10	10	AY.43	0.000044
ORF1ab/nsp14A2-B	443	P443del	CCA	---	10	10	AY.98.1	0.000484
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	10	10	AZ.1	0.008673
ORF1ab/nsp14A2-B	443	P443L	cCa	cTa	10	10	B.1.1.294	0.012658
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	10	10	B.1.177	0.000132
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	10	10	C.5	0.909091
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	10	10	P.1.12	0.00484
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	9	9	AY.46.6	0.00065
ORF1ab/nsp14A2-B	443	P443del	CCA	---	9	9	AY.5.4	0.00249
ORF1ab/nsp14A2-B	443	P443L	cCa	cTa	9	9	B.1.2	0.000079
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	9	9	B.1.351	0.000268
ORF1ab/nsp14A2-B	443	P443del	CCA	---	9	9	B.1.576	0.00816
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	9	9	D.2	0.000675
ORF1ab/nsp14A2-B	443	P443del	CCA	---	8	8	AY.3.1	0.000682
ORF1ab/nsp14A2-B	443	P443del	CCA	---	8	8	AY.40	0.007715
ORF1ab/nsp14A2-B	443	P443P	ccA	ccG	8	8	AY.61	0.000838
ORF1ab/nsp14A2-B	443	P443L	cCa	cTa	8	8	B.1.221	0.000568
ORF1ab/nsp14A2-B	443	P443Q	cCa	cAa	7	7	AY.102	0.000186
ORF1ab/nsp14A2-B	443	P443Q	cCa	cAa	7	7	AY.4	0.000011
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	7	7	AY.47	0.000218
ORF1ab/nsp14A2-B	443	P443del	CCA	---	7	7	AY.5.3	0.002362
ORF1ab/nsp14A2-B	443	P443del	CCA	---	7	7	AY.75.1	0.001262
ORF1ab/nsp14A2-B	443	P443del	CCA	---	6	6		0.333333
ORF1ab/nsp14A2-B	443	P443del1	Cca	-ca	3	6	All	0.000001
ORF1ab/nsp14A2-B	443	P443del1	CCA	-NN	3	6	All	0.000001
ORF1ab/nsp14A2-B	443	P443del	CCA	---	6	6	AY.101	0.002943
ORF1ab/nsp14A2-B	443	P443del	CCA	---	6	6	AY.110	0.000676
ORF1ab/nsp14A2-B	443	P443P	ccA	ccG	5	6	AY.120	0.000186
ORF1ab/nsp14A2-B	443	P443P	ccA	ccT	1	6	AY.120	0.000037
ORF1ab/nsp14A2-B	443	P443del	CCA	---	6	6	AY.13	0.000966
ORF1ab/nsp14A2-B	443	P443T	Cca	Aca	6	6	AY.25	0.000036
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	6	6	AY.29	0.000095
ORF1ab/nsp14A2-B	443	P443L	cCa	cTa	6	6	AY.30	0.002374
ORF1ab/nsp14A2-B	443	P443del	CCA	---	6	6	AY.4	0.000009
ORF1ab/nsp14A2-B	443	P443del	CCA	---	6	6	AY.42	0.000241
ORF1ab/nsp14A2-B	443	P443P	ccA	ccG	4	6	AY.43	0.000018
ORF1ab/nsp14A2-B	443	P443P	ccA	ccC	1	6	AY.43	0.000004
ORF1ab/nsp14A2-B	443	P443P	ccA	ccT	1	6	AY.43	0.000004
ORF1ab/nsp14A2-B	443	P443P	ccA	ccG	6	6	AY.44	0.000037
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	6	6	AY.5	0.000124
ORF1ab/nsp14A2-B	443	P443del	CCA	---	6	6	AY.55	0.005505
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	6	6	AY.75.1	0.001082
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	6	6	B.1.1.222	0.001224
ORF1ab/nsp14A2-B	443	P443del	CCA	---	6	6	B.1.1.37	0.001157
ORF1ab/nsp14A2-B	443	P443T	Cca	Aca	6	6	B.1.1.7	0.000005
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	6	6	B.1.160	0.000187
ORF1ab/nsp14A2-B	443	P443del	CCA	---	6	6	B.1.221	0.000426
ORF1ab/nsp14A2-B	443	P443del	CCA	---	6	6	B.1.265	0.007624
ORF1ab/nsp14A2-B	443	P443P	ccA	ccG	6	6	B.1.427	0.000303
ORF1ab/nsp14A2-B	443	P443A	Cca	Gca	4	5	All	0.000001
ORF1ab/nsp14A2-B	443	P443A	CcA	GcG	1	5	All	0
ORF1ab/nsp14A2-B	443	P443del	CCA	---	5	5	AY.59	0.002648
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	5	5	B.1.1.519	0.000199
ORF1ab/nsp14A2-B	443	P443del	CCA	---	5	5	B.1.160	0.000156
ORF1ab/nsp14A2-B	443	P443P	ccA	ccG	4	5	B.1.2	0.000035
ORF1ab/nsp14A2-B	443	P443P	ccA	ccT	1	5	B.1.2	0.000009
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	5	5	B.1.243	0.000348
ORF1ab/nsp14A2-B	443	P443L	cCa	cTa	5	5	B.1.258.14	0.004902
ORF1ab/nsp14A2-B	443	P443del	CCA	---	5	5	B.1.517	0.002135
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	5	5	C.37	0.00058
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	5	5	L.1	0.009524
ORF1ab/nsp14A2-B	443	P443del	CCA	---	4	4	AY.100	0.000184
ORF1ab/nsp14A2-B	443	P443L	cCa	cTa	4	4	AY.102	0.000106
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	4	4	AY.102	0.000106
ORF1ab/nsp14A2-B	443	P443del	CCA	---	4	4	AY.11	0.005355
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	4	4	AY.119	0.000141
ORF1ab/nsp14A2-B	443	P443del	CCA	---	4	4	AY.20	0.000155
ORF1ab/nsp14A2-B	443	P443del	CCA	---	4	4	AY.23	0.000279
ORF1ab/nsp14A2-B	443	P443L	cCa	cTa	4	4	AY.25	0.000024
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	4	4	AY.26	0.000113
ORF1ab/nsp14A2-B	443	P443del	CCA	---	4	4	AY.26	0.000113
ORF1ab/nsp14A2-B	443	P443del	CCA	---	4	4	AY.33	0.000267
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	4	4	AY.61	0.000419
ORF1ab/nsp14A2-B	443	P443P	ccA	ccT	4	4	B.1	0.000037
ORF1ab/nsp14A2-B	443	P443P	ccA	ccG	4	4	B.1.1	0.000073
ORF1ab/nsp14A2-B	443	P443del	CCA	---	4	4	B.1.1.218	0.030769
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	4	4	B.1.160.9	0.028777
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	4	4	B.1.234	0.000528
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	4	4	B.1.258	0.000266
ORF1ab/nsp14A2-B	443	P443del	CCA	---	4	4	B.1.260	0.013378
ORF1ab/nsp14A2-B	443	P443del	CCA	---	4	4	B.1.36	0.000584
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	4	4	B.1.375	0.003279
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	4	4	B.1.427	0.000202
ORF1ab/nsp14A2-B	443	P443P	ccA	ccT	4	4	B.1.526	0.000094
ORF1ab/nsp14A2-B	443	P443del	CCA	---	4	4	B.1.568	0.004444
ORF1ab/nsp14A2-B	443	P443L	cCa	cTa	4	4	B.1.623	0.002146
ORF1ab/nsp14A2-B	443	P443del	CCA	---	4	4	P.1.15	0.000929
ORF1ab/nsp14A2-B	443	P443Q	cCa	cAa	3	3		0.166667
ORF1ab/nsp14A2-B	443	P443del2	CCa	--a	3	3	All	0.000001
ORF1ab/nsp14A2-B	443	P443del	CCA	---	3	3	AY.16.1	0.00141
ORF1ab/nsp14A2-B	443	P443P	ccA	ccT	3	3	AY.25	0.000018
ORF1ab/nsp14A2-B	443	P443L	cCa	cTa	3	3	AY.26	0.000085
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	3	3	AY.30	0.001187
ORF1ab/nsp14A2-B	443	P443L	cCa	cTa	3	3	AY.34	0.000291
ORF1ab/nsp14A2-B	443	P443P	ccA	ccG	3	3	AY.4.2	0.000065
ORF1ab/nsp14A2-B	443	P443Q	cCa	cAa	3	3	AY.43	0.000013
ORF1ab/nsp14A2-B	443	P443L	cCa	cTa	3	3	AY.44	0.000018
ORF1ab/nsp14A2-B	443	P443del	CCA	---	3	3	AY.47	0.000093
ORF1ab/nsp14A2-B	443	P443T	Cca	Aca	3	3	AY.5	0.000062
ORF1ab/nsp14A2-B	443	P443del	CCA	---	3	3	B.1.1.174	0.010135
ORF1ab/nsp14A2-B	443	P443L	cCa	cTa	3	3	B.1.1.189	0.004539
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	3	3	B.1.1.348	0.002389
ORF1ab/nsp14A2-B	443	P443del	CCA	---	3	3	B.1.1.416	0.002715
ORF1ab/nsp14A2-B	443	P443Q	cCa	cAa	3	3	B.1.1.7	0.000003
ORF1ab/nsp14A2-B	443	P443L	cCa	cTa	3	3	B.1.1.89	0.018182
ORF1ab/nsp14A2-B	443	P443L	cCa	cTa	3	3	B.1.160	0.000094
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	3	3	B.1.221	0.000213
ORF1ab/nsp14A2-B	443	P443del	CCA	---	3	3	B.1.349	0.002144
ORF1ab/nsp14A2-B	443	P443P	ccA	ccT	2	3	B.1.351	0.000059
ORF1ab/nsp14A2-B	443	P443P	ccA	ccG	1	3	B.1.351	0.00003
ORF1ab/nsp14A2-B	443	P443L	cCa	cTa	3	3	B.1.356	0.005181
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	3	3	B.1.453	0.009709
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	3	3	B.1.617.1	0.000387
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	3	3	B.1.621	0.000266
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	3	3	B.1.628	0.001057
ORF1ab/nsp14A2-B	443	P443P	ccA	ccT	2	3	P.1	0.000032
ORF1ab/nsp14A2-B	443	P443P	ccA	ccG	1	3	P.1	0.000016
ORF1ab/nsp14A2-B	443	P443L	cCa	cTa	3	3	P.1.17	0.000485
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	3	3	Q.1	0.000379
ORF1ab/nsp14A2-B	443	P443L	cCa	cTa	1	2		0.055556
ORF1ab/nsp14A2-B	443	P443T	Cca	Aca	1	2		0.055556
ORF1ab/nsp14A2-B	443	P443T	CcA	AcG	1	2		0.055556
ORF1ab/nsp14A2-B	443	P443L	cCA	cTG	1	2		0.055556
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	2	2	AU.3	0.004219
ORF1ab/nsp14A2-B	443	P443P	ccA	ccG	2	2	AY.1	0.000791
ORF1ab/nsp14A2-B	443	P443L	cCa	cTa	2	2	AY.100	0.000092
ORF1ab/nsp14A2-B	443	P443del	CCA	---	2	2	AY.105	0.001286
ORF1ab/nsp14A2-B	443	P443del	CCA	---	2	2	AY.106	0.00067
ORF1ab/nsp14A2-B	443	P443del	CCA	---	2	2	AY.107	0.000932
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	2	2	AY.113	0.000285
ORF1ab/nsp14A2-B	443	P443del	CCA	---	2	2	AY.21	0.003795
ORF1ab/nsp14A2-B	443	P443P	ccA	ccG	2	2	AY.26	0.000057
ORF1ab/nsp14A2-B	443	P443L	cCa	cTa	2	2	AY.29	0.000032
ORF1ab/nsp14A2-B	443	P443L	cCa	cTa	2	2	AY.3	0.00002
ORF1ab/nsp14A2-B	443	P443Q	cCa	cAa	2	2	AY.3	0.00002
ORF1ab/nsp14A2-B	443	P443del	CCA	---	2	2	AY.30	0.000791
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	2	2	AY.34	0.000194
ORF1ab/nsp14A2-B	443	P443L	cCa	cTa	2	2	AY.37	0.000632
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	2	2	AY.39	0.000049
ORF1ab/nsp14A2-B	443	P443L	cCa	cTa	2	2	AY.39	0.000049
ORF1ab/nsp14A2-B	443	P443del	CCA	---	2	2	AY.39.1	0.000079
ORF1ab/nsp14A2-B	443	P443T	Cca	Aca	2	2	AY.43	0.000009
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	2	2	AY.46.4	0.000329
ORF1ab/nsp14A2-B	443	P443del	CCA	---	2	2	AY.46.6	0.000144
ORF1ab/nsp14A2-B	443	P443del	CCA	---	2	2	AY.5	0.000041
ORF1ab/nsp14A2-B	443	P443L	cCa	cTa	2	2	AY.6	0.000082
ORF1ab/nsp14A2-B	443	P443del	CCA	---	2	2	AY.61	0.00021
ORF1ab/nsp14A2-B	443	P443del	CCA	---	2	2	AY.67	0.000929
ORF1ab/nsp14A2-B	443	P443del	CCA	---	2	2	AY.84	0.000875
ORF1ab/nsp14A2-B	443	P443del	CCA	---	2	2	AY.85	0.000854
ORF1ab/nsp14A2-B	443	P443del	CCA	---	2	2	AY.87	0.001665
ORF1ab/nsp14A2-B	443	P443del	CCA	---	2	2	AY.9.1	0.000167
ORF1ab/nsp14A2-B	443	P443L	cCa	cTa	2	2	AY.9.2	0.000073
ORF1ab/nsp14A2-B	443	P443del	CCA	---	2	2	AY.97	0.003401
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	2	2	AY.98	0.000158
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	2	2	AY.98.1	0.000097
ORF1ab/nsp14A2-B	443	P443del	CCA	---	2	2	B	0.000256
ORF1ab/nsp14A2-B	443	P443Q	cCa	cAa	2	2	B.1	0.000018
ORF1ab/nsp14A2-B	443	P443L	cCa	cTa	2	2	B.1.1	0.000036
ORF1ab/nsp14A2-B	443	P443del	CCA	---	2	2	B.1.1.207	0.002364
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	2	2	B.1.1.216	0.001781
ORF1ab/nsp14A2-B	443	P443L	cCa	cTa	2	2	B.1.1.277	0.001517
ORF1ab/nsp14A2-B	443	P443del	CCA	---	2	2	B.1.1.277	0.001517
ORF1ab/nsp14A2-B	443	P443del	CCA	---	2	2	B.1.1.306	0.000877
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	2	2	B.1.1.318	0.000604
ORF1ab/nsp14A2-B	443	P443del	CCA	---	2	2	B.1.1.320	0.036364
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	2	2	B.1.1.351	0.005587
ORF1ab/nsp14A2-B	443	P443del	CCA	---	2	2	B.1.1.409	0.005666
ORF1ab/nsp14A2-B	443	P443L	cCa	cTa	2	2	B.1.1.411	0.029412
ORF1ab/nsp14A2-B	443	P443del	CCA	---	2	2	B.1.1.434	0.000697
ORF1ab/nsp14A2-B	443	P443del	CCA	---	2	2	B.1.1.519	0.000079
ORF1ab/nsp14A2-B	443	P443del1	CCA	-NN	2	2	B.1.1.7	0.000002
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	2	2	B.1.1.83	0.00542
ORF1ab/nsp14A2-B	443	P443del	CCA	---	2	2	B.1.110.3	0.001437
ORF1ab/nsp14A2-B	443	P443Q	cCa	cAa	2	2	B.1.160	0.000062
ORF1ab/nsp14A2-B	443	P443P	ccA	ccG	2	2	B.1.160	0.000062
ORF1ab/nsp14A2-B	443	P443del	CCA	---	2	2	B.1.177.62	0.002384
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	2	2	B.1.177.7	0.00033
ORF1ab/nsp14A2-B	443	P443del	CCA	---	2	2	B.1.234	0.000264
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	2	2	B.1.241	0.001623
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	2	2	B.1.258.17	0.000208
ORF1ab/nsp14A2-B	443	P443P	ccA	ccT	1	2	B.1.311	0.000275
ORF1ab/nsp14A2-B	443	P443P	ccA	ccG	1	2	B.1.311	0.000275
ORF1ab/nsp14A2-B	443	P443L	cCa	cTa	2	2	B.1.351	0.000059
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	2	2	B.1.36.38	0.003284
ORF1ab/nsp14A2-B	443	P443del	CCA	---	2	2	B.1.375	0.001639
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	2	2	B.1.398	0.005952
ORF1ab/nsp14A2-B	443	P443del	CCA	---	2	2	B.1.416.1	0.003125
ORF1ab/nsp14A2-B	443	P443del	CCA	---	2	2	B.1.427	0.000101
ORF1ab/nsp14A2-B	443	P443L	cCa	cTa	2	2	B.1.526	0.000047
ORF1ab/nsp14A2-B	443	P443del	CCA	---	2	2	B.1.533	0.019231
ORF1ab/nsp14A2-B	443	P443del	CCA	---	2	2	B.1.575	0.000607
ORF1ab/nsp14A2-B	443	P443del	CCA	---	2	2	B.1.595	0.000522
ORF1ab/nsp14A2-B	443	P443T	Cca	Aca	2	2	B.1.617.2	0.000008
ORF1ab/nsp14A2-B	443	P443T	Cca	Aca	2	2	C.37	0.000232
ORF1ab/nsp14A2-B	443	P443del	CCA	---	2	2	P.1	0.000032
ORF1ab/nsp14A2-B	443	P443del	CCA	---	2	2	P.2	0.000373
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	2	2	Q.3	0.00029
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	2	2	Q.4	0.00091
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	2	2	Q.7	0.002222
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	2	2	Q.8	0.00033
ORF1ab/nsp14A2-B	443	P443P	ccA	ccG	1	1		0.055556
ORF1ab/nsp14A2-B	443	P443I	CCa	ATa	1	1		0.055556
ORF1ab/nsp14A2-B	443	P443M	CCA	ATG	1	1		0.055556
ORF1ab/nsp14A2-B	443	P443P	ccA	ccT	1	1	A	0.000387
ORF1ab/nsp14A2-B	443	P443L	cCa	cTa	1	1	A.18	0.05
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	1	1	A.2.2	0.001689
ORF1ab/nsp14A2-B	443	P443P	ccA	ccG	1	1	A.2.5	0.000499
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	1	1	A.2.5.1	0.004808
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	1	1	A.2.5.2	0.001572
ORF1ab/nsp14A2-B	443	P443L	cCa	cTa	1	1	A.2.5.2	0.001572
ORF1ab/nsp14A2-B	443	P443del	CCA	---	1	1	AD.2	0.000219
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	1	1	AE.1	0.011364
ORF1ab/nsp14A2-B	443	P443M	CCA	ATG	1	1	All	0
ORF1ab/nsp14A2-B	443	P443I	CCa	ATa	1	1	All	0
ORF1ab/nsp14A2-B	443	P443X	CCa	TGa	1	1	All	0
ORF1ab/nsp14A2-B	443	P443Y	CCA	TAT	1	1	All	0
ORF1ab/nsp14A2-B	443	P443K	CCa	AAa	1	1	All	0
ORF1ab/nsp14A2-B	443	P443P	ccA	ccG	1	1	AY.100	0.000046
ORF1ab/nsp14A2-B	443	P443P	ccA	ccG	1	1	AY.102	0.000027
ORF1ab/nsp14A2-B	443	P443del	CCA	---	1	1	AY.108	0.001103
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	1	1	AY.109	0.00074
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	1	1	AY.111	0.000183
ORF1ab/nsp14A2-B	443	P443del	CCA	---	1	1	AY.113	0.000142
ORF1ab/nsp14A2-B	443	P443del	CCA	---	1	1	AY.114	0.000231
ORF1ab/nsp14A2-B	443	P443del	CCA	---	1	1	AY.116	0.000287
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	1	1	AY.117	0.000085
ORF1ab/nsp14A2-B	443	P443del	CCA	---	1	1	AY.117	0.000085
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	1	1	AY.118	0.000063
ORF1ab/nsp14A2-B	443	P443P	ccA	ccT	1	1	AY.119	0.000035
ORF1ab/nsp14A2-B	443	P443T	Cca	Aca	1	1	AY.119	0.000035
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	1	1	AY.120	0.000037
ORF1ab/nsp14A2-B	443	P443L	cCa	cTa	1	1	AY.120	0.000037
ORF1ab/nsp14A2-B	443	P443del	CCA	---	1	1	AY.120.2	0.001285
ORF1ab/nsp14A2-B	443	P443del	CCA	---	1	1	AY.121	0.000135
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	1	1	AY.13	0.000161
ORF1ab/nsp14A2-B	443	P443del	CCA	---	1	1	AY.16	0.00038
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	1	1	AY.20	0.000039
ORF1ab/nsp14A2-B	443	P443P	ccA	ccT	1	1	AY.23	0.00007
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	1	1	AY.23	0.00007
ORF1ab/nsp14A2-B	443	P443T	Cca	Aca	1	1	AY.29	0.000016
ORF1ab/nsp14A2-B	443	P443del	CCA	---	1	1	AY.29	0.000016
ORF1ab/nsp14A2-B	443	P443del	CCA	---	1	1	AY.29.1	0.000221
ORF1ab/nsp14A2-B	443	P443L	cCa	cTa	1	1	AY.33	0.000067
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	1	1	AY.33	0.000067
ORF1ab/nsp14A2-B	443	P443del	CCA	---	1	1	AY.34	0.000097
ORF1ab/nsp14A2-B	443	P443P	ccA	ccC	1	1	AY.34.1	0.00051
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	1	1	AY.37	0.000316
ORF1ab/nsp14A2-B	443	P443P	ccA	ccG	1	1	AY.37	0.000316
ORF1ab/nsp14A2-B	443	P443P	ccA	ccG	1	1	AY.38	0.000499
ORF1ab/nsp14A2-B	443	P443P	ccA	ccT	1	1	AY.39	0.000025
ORF1ab/nsp14A2-B	443	P443T	Cca	Aca	1	1	AY.39.1	0.00004
ORF1ab/nsp14A2-B	443	P443P	ccA	ccG	1	1	AY.39.2	0.001541
ORF1ab/nsp14A2-B	443	P443A	Cca	Gca	1	1	AY.4	0.000002
ORF1ab/nsp14A2-B	443	P443T	Cca	Aca	1	1	AY.4	0.000002
ORF1ab/nsp14A2-B	443	P443L	cCa	cTa	1	1	AY.4.2	0.000022
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	1	1	AY.4.2	0.000022
ORF1ab/nsp14A2-B	443	P443del1	Cca	-ca	1	1	AY.4.2.1	0.000149
ORF1ab/nsp14A2-B	443	P443del	CCA	---	1	1	AY.4.5	0.000107
ORF1ab/nsp14A2-B	443	P443P	ccA	ccG	1	1	AY.40	0.000964
ORF1ab/nsp14A2-B	443	P443T	Cca	Aca	1	1	AY.42	0.00004
ORF1ab/nsp14A2-B	443	P443R	cCa	cGa	1	1	AY.43	0.000004
ORF1ab/nsp14A2-B	443	P443A	Cca	Gca	1	1	AY.43	0.000004
ORF1ab/nsp14A2-B	443	P443del	CCA	---	1	1	AY.45	0.000122
ORF1ab/nsp14A2-B	443	P443T	Cca	Aca	1	1	AY.46	0.000104
ORF1ab/nsp14A2-B	443	P443del	CCA	---	1	1	AY.46	0.000104
ORF1ab/nsp14A2-B	443	P443del	CCA	---	1	1	AY.46.2	0.000635
ORF1ab/nsp14A2-B	443	P443L	cCa	cTa	1	1	AY.46.6	0.000072
ORF1ab/nsp14A2-B	443	P443L	cCa	cTa	1	1	AY.47	0.000031
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	1	1	AY.53	0.000288
ORF1ab/nsp14A2-B	443	P443del	CCA	---	1	1	AY.53	0.000288
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	1	1	AY.54	0.000095
ORF1ab/nsp14A2-B	443	P443Q	cCa	cAa	1	1	AY.54	0.000095
ORF1ab/nsp14A2-B	443	P443del	CCA	---	1	1	AY.54	0.000095
ORF1ab/nsp14A2-B	443	P443del	CCA	---	1	1	AY.56	0.001605
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	1	1	AY.59	0.00053
ORF1ab/nsp14A2-B	443	P443P	ccA	ccG	1	1	AY.59	0.00053
ORF1ab/nsp14A2-B	443	P443L	cCa	cTa	1	1	AY.62	0.000436
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	1	1	AY.64	0.000595
ORF1ab/nsp14A2-B	443	P443del	CCA	---	1	1	AY.64	0.000595
ORF1ab/nsp14A2-B	443	P443L	cCa	cTa	1	1	AY.64	0.000595
ORF1ab/nsp14A2-B	443	P443P	ccA	ccG	1	1	AY.65	0.000533
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	1	1	AY.67	0.000464
ORF1ab/nsp14A2-B	443	P443del	CCA	---	1	1	AY.68	0.000274
ORF1ab/nsp14A2-B	443	P443L	cCa	cTa	1	1	AY.69	0.000187
ORF1ab/nsp14A2-B	443	P443L	cCa	cTa	1	1	AY.7	0.000196
ORF1ab/nsp14A2-B	443	P443L	cCa	cTa	1	1	AY.7.2	0.000559
ORF1ab/nsp14A2-B	443	P443del	CCA	---	1	1	AY.7.2	0.000559
ORF1ab/nsp14A2-B	443	P443del	CCA	---	1	1	AY.71	0.000475
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	1	1	AY.75	0.000056
ORF1ab/nsp14A2-B	443	P443L	cCa	cTa	1	1	AY.75	0.000056
ORF1ab/nsp14A2-B	443	P443L	cCa	cTa	1	1	AY.75.1	0.00018
ORF1ab/nsp14A2-B	443	P443P	ccA	ccG	1	1	AY.75.1	0.00018
ORF1ab/nsp14A2-B	443	P443del	CCA	---	1	1	AY.77	0.001127
ORF1ab/nsp14A2-B	443	P443del	CCA	---	1	1	AY.78	0.001541
ORF1ab/nsp14A2-B	443	P443L	cCa	cTa	1	1	AY.79	0.001211
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	1	1	AY.9	0.000068
ORF1ab/nsp14A2-B	443	P443L	cCa	cTa	1	1	AY.92	0.000287
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	1	1	AY.92	0.000287
ORF1ab/nsp14A2-B	443	P443del	CCA	---	1	1	AY.94	0.000443
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	1	1	AY.94	0.000443
ORF1ab/nsp14A2-B	443	P443L	cCa	cTa	1	1	AY.98	0.000079
ORF1ab/nsp14A2-B	443	P443del	CCA	---	1	1	AY.99	0.001049
ORF1ab/nsp14A2-B	443	P443L	cCa	cTa	1	1	AY.99.2	0.000092
ORF1ab/nsp14A2-B	443	P443del	CCA	---	1	1	AY.99.2	0.000092
ORF1ab/nsp14A2-B	443	P443del	CCA	---	1	1	AZ.3	0.00152
ORF1ab/nsp14A2-B	443	P443T	Cca	Aca	1	1	B.1	0.000009
ORF1ab/nsp14A2-B	443	P443X	CCa	TGa	1	1	B.1	0.000009
ORF1ab/nsp14A2-B	443	P443K	CCa	AAa	1	1	B.1	0.000009
ORF1ab/nsp14A2-B	443	P443Y	CCA	TAT	1	1	B.1	0.000009
ORF1ab/nsp14A2-B	443	P443del1	Cca	-ca	1	1	B.1	0.000009
ORF1ab/nsp14A2-B	443	P443del1	CCA	-NN	1	1	B.1.1	0.000018
ORF1ab/nsp14A2-B	443	P443A	Cca	Gca	1	1	B.1.1	0.000018
ORF1ab/nsp14A2-B	443	P443T	Cca	Aca	1	1	B.1.1	0.000018
ORF1ab/nsp14A2-B	443	P443T	Cca	Aca	1	1	B.1.1.1	0.000327
ORF1ab/nsp14A2-B	443	P443R	CCa	AGa	1	1	B.1.1.1	0.000327
ORF1ab/nsp14A2-B	443	P443L	cCa	cTa	1	1	B.1.1.115	0.008929
ORF1ab/nsp14A2-B	443	P443L	cCa	cTa	1	1	B.1.1.157	0.000913
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	1	1	B.1.1.176	0.000439
ORF1ab/nsp14A2-B	443	P443del	CCA	---	1	1	B.1.1.192	0.002309
ORF1ab/nsp14A2-B	443	P443del	CCA	---	1	1	B.1.1.194	0.00495
ORF1ab/nsp14A2-B	443	P443P	ccA	ccG	1	1	B.1.1.214	0.000055
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	1	1	B.1.1.214	0.000055
ORF1ab/nsp14A2-B	443	P443T	Cca	Aca	1	1	B.1.1.216	0.00089
ORF1ab/nsp14A2-B	443	P443P	ccA	ccC	1	1	B.1.1.25	0.000569
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	1	1	B.1.1.263	0.001558
ORF1ab/nsp14A2-B	443	P443del	CCA	---	1	1	B.1.1.269	0.001353
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	1	1	B.1.1.279	0.001121
ORF1ab/nsp14A2-B	443	P443L	cCa	cTa	1	1	B.1.1.28	0.000311
ORF1ab/nsp14A2-B	443	P443P	ccA	ccG	1	1	B.1.1.284	0.000107
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	1	1	B.1.1.289	0.002083
ORF1ab/nsp14A2-B	443	P443L	cCa	cTa	1	1	B.1.1.301	0.001179
ORF1ab/nsp14A2-B	443	P443del	CCA	---	1	1	B.1.1.305	0.003861
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	1	1	B.1.1.306	0.000438
ORF1ab/nsp14A2-B	443	P443P	ccA	ccG	1	1	B.1.1.306	0.000438
ORF1ab/nsp14A2-B	443	P443del	CCA	---	1	1	B.1.1.311	0.000358
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	1	1	B.1.1.317	0.000412
ORF1ab/nsp14A2-B	443	P443del	CCA	---	1	1	B.1.1.348	0.000796
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	1	1	B.1.1.389	0.006061
ORF1ab/nsp14A2-B	443	P443del	CCA	---	1	1	B.1.1.411	0.014706
ORF1ab/nsp14A2-B	443	P443del	CCA	---	1	1	B.1.1.448	0.002033
ORF1ab/nsp14A2-B	443	P443del	CCA	---	1	1	B.1.1.46	0.004367
ORF1ab/nsp14A2-B	443	P443P	ccA	ccG	1	1	B.1.1.519	0.00004
ORF1ab/nsp14A2-B	443	P443L	cCa	cTa	1	1	B.1.1.519	0.00004
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	1	1	B.1.1.523	0.001563
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	1	1	B.1.1.55	0.012987
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	1	1	B.1.1.59	0.006494
ORF1ab/nsp14A2-B	443	P443del2	CCa	--a	1	1	B.1.1.7	0.000001
ORF1ab/nsp14A2-B	443	P443A	CcA	GcG	1	1	B.1.1.7	0.000001
ORF1ab/nsp14A2-B	443	P443R	cCa	cGa	1	1	B.1.1.7	0.000001
ORF1ab/nsp14A2-B	443	P443del	CCA	---	1	1	B.1.1.70	0.000341
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	1	1	B.1.126	0.001276
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	1	1	B.1.170	0.00431
ORF1ab/nsp14A2-B	443	P443Q	cCa	cAa	1	1	B.1.177	0.000013
ORF1ab/nsp14A2-B	443	P443P	ccA	ccG	1	1	B.1.177.10	0.000878
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	1	1	B.1.177.11	0.001698
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	1	1	B.1.177.16	0.000664
ORF1ab/nsp14A2-B	443	P443del	CCA	---	1	1	B.1.177.16	0.000664
ORF1ab/nsp14A2-B	443	P443del	CCA	---	1	1	B.1.177.19	0.001431
ORF1ab/nsp14A2-B	443	P443P	ccA	ccT	1	1	B.1.177.24	0.001295
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	1	1	B.1.177.4	0.000211
ORF1ab/nsp14A2-B	443	P443del	CCA	---	1	1	B.1.177.48	0.003125
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	1	1	B.1.177.50	0.004695
ORF1ab/nsp14A2-B	443	P443del	CCA	---	1	1	B.1.177.50	0.004695
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	1	1	B.1.177.54	0.000606
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	1	1	B.1.177.61	0.043478
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	1	1	B.1.177.62	0.001192
ORF1ab/nsp14A2-B	443	P443del	CCA	---	1	1	B.1.177.63	0.002703
ORF1ab/nsp14A2-B	443	P443del	CCA	---	1	1	B.1.177.68	0.015152
ORF1ab/nsp14A2-B	443	P443del	CCA	---	1	1	B.1.177.69	0.001484
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	1	1	B.1.177.73	0.000566
ORF1ab/nsp14A2-B	443	P443del	CCA	---	1	1	B.1.177.73	0.000566
ORF1ab/nsp14A2-B	443	P443del	CCA	---	1	1	B.1.177.75	0.001041
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	1	1	B.1.177.79	0.002342
ORF1ab/nsp14A2-B	443	P443L	cCa	cTa	1	1	B.1.177.81	0.000189
ORF1ab/nsp14A2-B	443	P443L	cCa	cTa	1	1	B.1.177.86	0.000183
ORF1ab/nsp14A2-B	443	P443del2	CCa	--a	1	1	B.1.2	0.000009
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	1	1	B.1.214.2	0.0006
ORF1ab/nsp14A2-B	443	P443P	ccA	ccG	1	1	B.1.221	0.000071
ORF1ab/nsp14A2-B	443	P443del	CCA	---	1	1	B.1.221.1	0.002907
ORF1ab/nsp14A2-B	443	P443Q	cCa	cAa	1	1	B.1.222	0.001692
ORF1ab/nsp14A2-B	443	P443P	ccA	ccG	1	1	B.1.234	0.000132
ORF1ab/nsp14A2-B	443	P443L	cCa	cTa	1	1	B.1.234	0.000132
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	1	1	B.1.236	0.002053
ORF1ab/nsp14A2-B	443	P443L	cCa	cTa	1	1	B.1.241	0.000812
ORF1ab/nsp14A2-B	443	P443del	CCA	---	1	1	B.1.258	0.000067
ORF1ab/nsp14A2-B	443	P443del	CCA	---	1	1	B.1.284	0.013158
ORF1ab/nsp14A2-B	443	P443L	cCa	cTa	1	1	B.1.324	0.001605
ORF1ab/nsp14A2-B	443	P443T	Cca	Aca	1	1	B.1.332	0.003497
ORF1ab/nsp14A2-B	443	P443T	Cca	Aca	1	1	B.1.351	0.00003
ORF1ab/nsp14A2-B	443	P443L	cCa	cTa	1	1	B.1.351.3	0.000876
ORF1ab/nsp14A2-B	443	P443L	cCa	cTa	1	1	B.1.351.5	0.0006
ORF1ab/nsp14A2-B	443	P443L	cCa	cTa	1	1	B.1.36	0.000146
ORF1ab/nsp14A2-B	443	P443del2	CCa	--a	1	1	B.1.36	0.000146
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	1	1	B.1.36	0.000146
ORF1ab/nsp14A2-B	443	P443Q	cCa	cAa	1	1	B.1.36.22	0.001208
ORF1ab/nsp14A2-B	443	P443del	CCA	---	1	1	B.1.36.31	0.001751
ORF1ab/nsp14A2-B	443	P443del	CCA	---	1	1	B.1.36.35	0.002604
ORF1ab/nsp14A2-B	443	P443L	cCa	cTa	1	1	B.1.36.8	0.001
ORF1ab/nsp14A2-B	443	P443del	CCA	---	1	1	B.1.36.8	0.001
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	1	1	B.1.362.2	0.004717
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	1	1	B.1.367	0.000792
ORF1ab/nsp14A2-B	443	P443del	CCA	---	1	1	B.1.395	0.007042
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	1	1	B.1.400	0.000429
ORF1ab/nsp14A2-B	443	P443del	CCA	---	1	1	B.1.409	0.000781
ORF1ab/nsp14A2-B	443	P443del	CCA	---	1	1	B.1.411	0.003704
ORF1ab/nsp14A2-B	443	P443del1	Cca	-ca	1	1	B.1.422	0.000812
ORF1ab/nsp14A2-B	443	P443del	CCA	---	1	1	B.1.425	0.002994
ORF1ab/nsp14A2-B	443	P443P	ccA	ccG	1	1	B.1.429	0.000024
ORF1ab/nsp14A2-B	443	P443del	CCA	---	1	1	B.1.433	0.003195
ORF1ab/nsp14A2-B	443	P443del	CCA	---	1	1	B.1.439	0.005917
ORF1ab/nsp14A2-B	443	P443L	cCa	cTa	1	1	B.1.456	0.003268
ORF1ab/nsp14A2-B	443	P443del	CCA	---	1	1	B.1.456	0.003268
ORF1ab/nsp14A2-B	443	P443L	cCa	cTa	1	1	B.1.466.2	0.000391
ORF1ab/nsp14A2-B	443	P443del	CCA	---	1	1	B.1.471	0.002732
ORF1ab/nsp14A2-B	443	P443L	cCa	cTa	1	1	B.1.480	0.002488
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	1	1	B.1.497	0.000315
ORF1ab/nsp14A2-B	443	P443L	cCa	cTa	1	1	B.1.517	0.000427
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	1	1	B.1.525	0.000113
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	1	1	B.1.526	0.000024
ORF1ab/nsp14A2-B	443	P443del	CCA	---	1	1	B.1.537	0.02
ORF1ab/nsp14A2-B	443	P443del	CCA	---	1	1	B.1.551	0.00129
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	1	1	B.1.561	0.000397
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	1	1	B.1.568	0.001111
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	1	1	B.1.575	0.000303
ORF1ab/nsp14A2-B	443	P443del	CCA	---	1	1	B.1.582	0.000491
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	1	1	B.1.588	0.00091
ORF1ab/nsp14A2-B	443	P443L	cCa	cTa	1	1	B.1.595	0.000261
ORF1ab/nsp14A2-B	443	P443R	cCa	cGa	1	1	B.1.596	0.000087
ORF1ab/nsp14A2-B	443	P443L	cCa	cTa	1	1	B.1.596	0.000087
ORF1ab/nsp14A2-B	443	P443Q	cCa	cAa	1	1	B.1.606	0.006024
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	1	1	B.1.609	0.000479
ORF1ab/nsp14A2-B	443	P443L	cCa	cTa	1	1	B.1.609	0.000479
ORF1ab/nsp14A2-B	443	P443Q	cCa	cAa	1	1	B.1.617.2	0.000004
ORF1ab/nsp14A2-B	443	P443A	Cca	Gca	1	1	B.1.617.2	0.000004
ORF1ab/nsp14A2-B	443	P443L	cCa	cTa	1	1	B.1.621	0.000089
ORF1ab/nsp14A2-B	443	P443del	CCA	---	1	1	B.1.621	0.000089
ORF1ab/nsp14A2-B	443	P443del	CCA	---	1	1	B.1.623	0.000536
ORF1ab/nsp14A2-B	443	P443L	cCa	cTa	1	1	B.1.628	0.000352
ORF1ab/nsp14A2-B	443	P443del	CCA	---	1	1	B.1.633	0.041667
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	1	1	B.1.637	0.000073
ORF1ab/nsp14A2-B	443	P443del	CCA	---	1	1	B.1.9.5	0.005682
ORF1ab/nsp14A2-B	443	P443del	CCA	---	1	1	B.40	0.000364
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	1	1	B.6	0.00091
ORF1ab/nsp14A2-B	443	P443Q	cCa	cAa	1	1	B.6	0.00091
ORF1ab/nsp14A2-B	443	P443L	cCa	cTa	1	1	C.36	0.000911
ORF1ab/nsp14A2-B	443	P443Q	cCa	cAa	1	1	C.36	0.000911
ORF1ab/nsp14A2-B	443	P443del	CCA	---	1	1	C.5	0.090909
ORF1ab/nsp14A2-B	443	P443Q	cCa	cAa	1	1	D.2	0.000075
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	1	1	N.4	0.004255
ORF1ab/nsp14A2-B	443	P443T	Cca	Aca	1	1	P.1	0.000016
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	1	1	P.1.1	0.000318
ORF1ab/nsp14A2-B	443	P443del	CCA	---	1	1	P.1.10	0.000269
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	1	1	P.1.14	0.000048
ORF1ab/nsp14A2-B	443	P443P	ccA	ccG	1	1	P.1.15	0.000232
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	1	1	P.1.7	0.000319
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	1	1	P.2	0.000187
ORF1ab/nsp14A2-B	443	P443del	CCA	---	1	1	Q.1	0.000126
ORF1ab/nsp14A2-B	443	P443del	CCA	---	1	1	R.1	0.00009
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	1	1	R.1	0.00009
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	1	1	R.2	0.014493
ORF1ab/nsp14A2-B	443	P443del	CCA	---	1	1	W.1	0.008696
ORF1ab/nsp14A2-B	443	P443S	Cca	Tca	1	1	W.4	0.001351

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.