CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp14A2-B : CodonNum = 43

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF1ab/nsp14A2-B	43	P43L	P5968L	nonsyn	cCt	cTt	24294	24294	1	18166-18168
ORF1ab/nsp14A2-B	43	P43S	P5968S	nonsyn	Cct	Tct	2463	2461	0.999188	18166-18168
ORF1ab/nsp14A2-B	43	P43S	P5968S	nonsyn	CcT	TcC	2463	2	0.000812018	18166-18168
ORF1ab/nsp14A2-B	43	P43P	P5968P	syn	ccT	ccC	421	313	0.743468	18166-18168
ORF1ab/nsp14A2-B	43	P43P	P5968P	syn	ccT	ccA	421	57	0.135392	18166-18168
ORF1ab/nsp14A2-B	43	P43P	P5968P	syn	ccT	ccG	421	51	0.12114	18166-18168
ORF1ab/nsp14A2-B	43	P43H	P5968H	nonsyn	cCt	cAt	379	379	1	18166-18168
ORF1ab/nsp14A2-B	43	P43A	P5968A	nonsyn	Cct	Gct	30	26	0.866667	18166-18168
ORF1ab/nsp14A2-B	43	P43A	P5968A	nonsyn	CcT	GcA	30	2	0.0666667	18166-18168
ORF1ab/nsp14A2-B	43	P43A	P5968A	nonsyn	CcT	GcG	30	2	0.0666667	18166-18168
ORF1ab/nsp14A2-B	43	P43del	P5968del	del	CCT	---	21	21	1	18166-18168
ORF1ab/nsp14A2-B	43	P43T	P5968T	nonsyn	Cct	Act	16	12	0.75	18166-18168
ORF1ab/nsp14A2-B	43	P43T	P5968T	nonsyn	CcT	AcG	16	2	0.125	18166-18168
ORF1ab/nsp14A2-B	43	P43T	P5968T	nonsyn	CcT	AcA	16	2	0.125	18166-18168
ORF1ab/nsp14A2-B	43	P43F	P5968F	nonsyn	CCt	TTt	6	6	1	18166-18168
ORF1ab/nsp14A2-B	43	P43X	P5968X	nonsyn	CCT	TAG	4	2	0.5	18166-18168
ORF1ab/nsp14A2-B	43	P43X	P5968X	nonsyn	CCT	TAA	4	2	0.5	18166-18168
ORF1ab/nsp14A2-B	43	P43N	P5968N	nonsyn	CCt	AAt	3	3	1	18166-18168
ORF1ab/nsp14A2-B	43	P43Y	P5968Y	nonsyn	CCT	TAC	2	2	1	18166-18168
ORF1ab/nsp14A2-B	43	P43R	P5968R	nonsyn	cCt	cGt	2	2	1	18166-18168
ORF1ab/nsp14A2-B	43	P43del2	P5968del2	del	CCt	--t	2	1	0.5	18166-18168
ORF1ab/nsp14A2-B	43	P43del2	P5968del2	del	cCT	c--	2	1	0.5	18166-18168
ORF1ab/nsp14A2-B	43	P43del1	P5968del1	del	ccT	cc-	1	1	1	18166-18168

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	24294	24294	All	0.004647
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	18028	18028	B.1.1.214	0.999778
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	2461	2463	All	0.000471
ORF1ab/nsp14A2-B	43	P43S	CcT	TcC	2	2463	All	0
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	1551	1551	AY.37	0.490202
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	697	697	B.1.361	0.898196
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	536	536	B.1.1	0.009724
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	509	509	AY.21	0.965844
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	466	466	AY.43	0.002065
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	464	464	AY.4	0.000722
ORF1ab/nsp14A2-B	43	P43P	ccT	ccC	313	421	All	0.00006
ORF1ab/nsp14A2-B	43	P43P	ccT	ccA	57	421	All	0.000011
ORF1ab/nsp14A2-B	43	P43P	ccT	ccG	51	421	All	0.00001
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	414	414	B.1.1.7	0.000371
ORF1ab/nsp14A2-B	43	P43H	cCt	cAt	379	379	All	0.000072
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	374	376	B.1.2	0.003293
ORF1ab/nsp14A2-B	43	P43S	CcT	TcC	2	376	B.1.2	0.000018
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	309	309	AY.103	0.001919
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	241	241	B.1.1.7	0.000216
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	206	206	AY.44	0.001254
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	178	178	B.1.617.2	0.00067
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	152	152	B.1.429	0.003576
ORF1ab/nsp14A2-B	43	P43H	cCt	cAt	151	151	AY.4	0.000235
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	139	139	P.1.1	0.044155
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	135	135	B.1.1.50	0.09165
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	124	124	B.1.429	0.002918
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	99	99	B.1.2	0.000872
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	96	96	B.1	0.000879
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	93	93	B.1.617.2	0.00035
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	79	79	AY.3	0.000786
ORF1ab/nsp14A2-B	43	P43P	ccT	ccC	66	68	AY.4	0.000103
ORF1ab/nsp14A2-B	43	P43P	ccT	ccA	2	68	AY.4	0.000003
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	66	66	B.1.177.86	0.012108
ORF1ab/nsp14A2-B	43	P43P	ccT	ccG	34	63	B.1.1.7	0.00003
ORF1ab/nsp14A2-B	43	P43P	ccT	ccC	22	63	B.1.1.7	0.00002
ORF1ab/nsp14A2-B	43	P43P	ccT	ccA	7	63	B.1.1.7	0.000006
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	62	62	AY.4	0.000096
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	60	60	B.1.1.222	0.01224
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	59	59	AY.4.2	0.00128
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	58	58	AY.25	0.000349
ORF1ab/nsp14A2-B	43	P43P	ccT	ccC	56	57	B.1.1	0.001016
ORF1ab/nsp14A2-B	43	P43P	ccT	ccA	1	57	B.1.1	0.000018
ORF1ab/nsp14A2-B	43	P43H	cCt	cAt	56	56	B.1.1.7	0.00005
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	44	44	AY.69	0.008214
ORF1ab/nsp14A2-B	43	P43H	cCt	cAt	43	43	AY.44	0.000262
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	38	38	AY.42	0.001529
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	38	38	B.1.177	0.0005
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	38	38	B.1.526	0.000893
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	36	36	AY.120	0.001338
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	36	36	AY.5	0.000743
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	36	36	B.1	0.00033
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	36	36	B.1.243	0.002505
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	33	33	AY.44	0.000201
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	31	31	B.1.438.1	0.003325
ORF1ab/nsp14A2-B	43	P43A	Cct	Gct	26	30	All	0.000005
ORF1ab/nsp14A2-B	43	P43A	CcT	GcG	2	30	All	0
ORF1ab/nsp14A2-B	43	P43A	CcT	GcA	2	30	All	0
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	29	29	B.1.177	0.000382
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	24	24	AY.25	0.000144
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	23	23	P.1	0.000362
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	22	22	AY.103	0.000137
ORF1ab/nsp14A2-B	43	P43P	ccT	ccC	19	22	AY.43	0.000084
ORF1ab/nsp14A2-B	43	P43P	ccT	ccG	3	22	AY.43	0.000013
ORF1ab/nsp14A2-B	43	P43P	ccT	ccC	19	22	B.1.617.2	0.000072
ORF1ab/nsp14A2-B	43	P43P	ccT	ccA	3	22	B.1.617.2	0.000011
ORF1ab/nsp14A2-B	43	P43del	CCT	---	21	21	All	0.000004
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	21	21	AY.43	0.000093
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	20	20	AD.2	0.004379
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	20	20	AY.101	0.009809
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	20	20	AY.20	0.000777
ORF1ab/nsp14A2-B	43	P43H	cCt	cAt	20	20	AY.26	0.000566
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	20	20	B.1.399	0.038685
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	18	18	B.1.1	0.000327
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	17	17	AY.39	0.00042
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	17	17	B.1.526	0.0004
ORF1ab/nsp14A2-B	43	P43T	Cct	Act	12	16	All	0.000002
ORF1ab/nsp14A2-B	43	P43T	CcT	AcA	2	16	All	0
ORF1ab/nsp14A2-B	43	P43T	CcT	AcG	2	16	All	0
ORF1ab/nsp14A2-B	43	P43P	ccT	ccC	16	16	AY.103	0.000099
ORF1ab/nsp14A2-B	43	P43P	ccT	ccC	16	16	B.1.221	0.001137
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	16	16	B.1.427	0.000808
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	15	15	AY.102	0.000398
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	15	15	AY.3	0.000149
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	15	15	B.1.416	0.019036
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	14	14	AY.39	0.000346
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	14	14	B.1.1.519	0.000556
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	13	13	P.1	0.000205
ORF1ab/nsp14A2-B	43	P43P	ccT	ccC	12	12	B.1.1.222	0.002448
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	12	12	B.1.221	0.000852
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	12	12	B.1.311	0.003295
ORF1ab/nsp14A2-B	43	P43H	cCt	cAt	10	10	AY.103	0.000062
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	10	10	AY.111	0.001832
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	10	10	AY.114	0.002311
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	10	10	AY.29	0.000158
ORF1ab/nsp14A2-B	43	P43A	Cct	Gct	10	10	AY.44	0.000061
ORF1ab/nsp14A2-B	43	P43H	cCt	cAt	10	10	AY.98.1	0.000484
ORF1ab/nsp14A2-B	43	P43P	ccT	ccC	10	10	AY.98.1	0.000484
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	10	10	B.1.346	0.013106
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	10	10	B.1.351	0.000297
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	10	10	C.37	0.001161
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	9	9	AY.121	0.001218
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	9	9	AY.13	0.001449
ORF1ab/nsp14A2-B	43	P43H	cCt	cAt	9	9	AY.39	0.000222
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	9	9	AY.74	0.001041
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	9	9	B.1.1.519	0.000357
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	9	9	B.1.1.56	0.160714
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	9	9	B.1.170	0.038793
ORF1ab/nsp14A2-B	43	P43H	cCt	cAt	9	9	B.1.2	0.000079
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	9	9	B.1.234	0.001187
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	9	9	B.1.258	0.000599
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	9	9	B.1.36	0.001313
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	8	8	AY.26	0.000226
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	8	8	AY.47	0.000249
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	8	8	B.1.139	0.005865
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	8	8	B.1.160	0.00025
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	8	8	B.1.427	0.000404
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	8	8	B.1.595	0.002088
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	8	8	Q.1	0.001011
ORF1ab/nsp14A2-B	43	P43T	Cct	Act	3	7		0.166667
ORF1ab/nsp14A2-B	43	P43T	CcT	AcA	2	7		0.111111
ORF1ab/nsp14A2-B	43	P43T	CcT	AcG	2	7		0.111111
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	7	7	AY.119	0.000247
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	7	7	AY.29	0.00011
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	7	7	AY.33	0.000467
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	7	7	AY.33	0.000467
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	7	7	AY.90	0.004791
ORF1ab/nsp14A2-B	43	P43A	CcT	GcA	2	6		0.111111
ORF1ab/nsp14A2-B	43	P43A	Cct	Gct	2	6		0.111111
ORF1ab/nsp14A2-B	43	P43A	CcT	GcG	2	6		0.111111
ORF1ab/nsp14A2-B	43	P43F	CCt	TTt	6	6	All	0.000001
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	6	6	AY.118	0.000376
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	6	6	AY.119	0.000212
ORF1ab/nsp14A2-B	43	P43P	ccT	ccC	6	6	AY.39	0.000148
ORF1ab/nsp14A2-B	43	P43P	ccT	ccA	6	6	AY.4.2	0.00013
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	6	6	AY.46	0.000624
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	6	6	AY.5	0.000124
ORF1ab/nsp14A2-B	43	P43H	cCt	cAt	6	6	B.1	0.000055
ORF1ab/nsp14A2-B	43	P43H	cCt	cAt	6	6	B.1.1	0.000109
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	6	6	B.1.1.207	0.007092
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	6	6	B.1.1.232	0.010889
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	6	6	B.1.1.326	0.010563
ORF1ab/nsp14A2-B	43	P43H	cCt	cAt	6	6	B.1.1.519	0.000238
ORF1ab/nsp14A2-B	43	P43del	CCT	---	6	6	B.1.1.7	0.000005
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	6	6	B.1.160	0.000187
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	6	6	B.1.351	0.000178
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	6	6	B.1.466.2	0.002347
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	6	6	B.1.580	0.02439
ORF1ab/nsp14A2-B	43	P43P	ccT	ccA	6	6	P.1	0.000095
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	5	5	AY.113	0.000712
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	5	5	AY.120	0.000186
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	5	5	AY.23	0.000349
ORF1ab/nsp14A2-B	43	P43H	cCt	cAt	5	5	AY.25	0.00003
ORF1ab/nsp14A2-B	43	P43P	ccT	ccA	2	5	AY.25	0.000012
ORF1ab/nsp14A2-B	43	P43P	ccT	ccC	2	5	AY.25	0.000012
ORF1ab/nsp14A2-B	43	P43P	ccT	ccG	1	5	AY.25	0.000006
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	5	5	AY.27	0.000324
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	5	5	AY.6	0.000206
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	5	5	AY.65	0.002665
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	5	5	AY.75	0.00028
ORF1ab/nsp14A2-B	43	P43P	ccT	ccA	5	5	AY.9	0.000338
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	5	5	AZ.1	0.004337
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	5	5	B.1.1.277	0.003794
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	5	5	B.1.1.28	0.001556
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	5	5	B.1.1.317	0.002058
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	5	5	B.1.1.317	0.002058
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	5	5	B.1.1.67	0.022831
ORF1ab/nsp14A2-B	43	P43P	ccT	ccA	2	5	B.1.2	0.000018
ORF1ab/nsp14A2-B	43	P43P	ccT	ccG	2	5	B.1.2	0.000018
ORF1ab/nsp14A2-B	43	P43P	ccT	ccC	1	5	B.1.2	0.000009
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	5	5	B.1.221	0.000355
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	5	5	B.1.258	0.000333
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	5	5	B.1.525	0.000566
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	5	5	B.1.596	0.000436
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	5	5	B.1.637	0.000365
ORF1ab/nsp14A2-B	43	P43H	cCt	cAt	5	5	P.2	0.000933
ORF1ab/nsp14A2-B	43	P43P	ccT	ccC	5	5	Q.1	0.000632
ORF1ab/nsp14A2-B	43	P43P	ccT	ccG	2	4		0.111111
ORF1ab/nsp14A2-B	43	P43X	CCT	TAA	2	4		0.111111
ORF1ab/nsp14A2-B	43	P43P	ccT	ccA	2	4		0.111111
ORF1ab/nsp14A2-B	43	P43X	CCT	TAG	2	4		0.111111
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	4	4	A	0.001548
ORF1ab/nsp14A2-B	43	P43X	CCT	TAG	2	4	All	0
ORF1ab/nsp14A2-B	43	P43X	CCT	TAA	2	4	All	0
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	4	4	AY.108	0.00441
ORF1ab/nsp14A2-B	43	P43A	Cct	Gct	4	4	AY.20	0.000155
ORF1ab/nsp14A2-B	43	P43P	ccT	ccC	4	4	AY.36	0.000593
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	4	4	AY.39.1	0.000158
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	4	4	AY.4.2	0.000087
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	4	4	AY.4.4	0.001637
ORF1ab/nsp14A2-B	43	P43P	ccT	ccC	3	4	AY.44	0.000018
ORF1ab/nsp14A2-B	43	P43P	ccT	ccA	1	4	AY.44	0.000006
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	4	4	AY.46.5	0.000794
ORF1ab/nsp14A2-B	43	P43P	ccT	ccC	4	4	AY.9.2	0.000147
ORF1ab/nsp14A2-B	43	P43P	ccT	ccC	3	4	B.1	0.000027
ORF1ab/nsp14A2-B	43	P43P	ccT	ccG	1	4	B.1	0.000009
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	4	4	B.1.1.222	0.000816
ORF1ab/nsp14A2-B	43	P43H	cCt	cAt	4	4	B.1.1.303	0.01105
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	4	4	B.1.1.306	0.001754
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	4	4	B.1.1.33	0.001684
ORF1ab/nsp14A2-B	43	P43P	ccT	ccG	4	4	B.1.1.519	0.000159
ORF1ab/nsp14A2-B	43	P43H	cCt	cAt	4	4	B.1.160	0.000125
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	4	4	B.1.177.57	0.001124
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	4	4	B.1.177.75	0.004162
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	4	4	B.1.234	0.000528
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	4	4	B.1.243	0.000278
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	4	4	B.1.349	0.002859
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	4	4	B.1.36.29	0.002069
ORF1ab/nsp14A2-B	43	P43P	ccT	ccC	4	4	B.1.427	0.000202
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	4	4	B.1.588	0.00364
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	4	4	B.1.596	0.000349
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	4	4	B.1.621	0.000354
ORF1ab/nsp14A2-B	43	P43N	CCt	AAt	3	3	All	0.000001
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	3	3	AY.100	0.000138
ORF1ab/nsp14A2-B	43	P43P	ccT	ccC	3	3	AY.114	0.000693
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	3	3	AY.23	0.000209
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	3	3	AY.27	0.000194
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	3	3	AY.3.1	0.000256
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	3	3	AY.45	0.000365
ORF1ab/nsp14A2-B	43	P43P	ccT	ccA	2	3	AY.46	0.000208
ORF1ab/nsp14A2-B	43	P43P	ccT	ccC	1	3	AY.46	0.000104
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	3	3	AY.46.6	0.000217
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	3	3	AY.47	0.000093
ORF1ab/nsp14A2-B	43	P43P	ccT	ccC	3	3	AY.5	0.000062
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	3	3	AY.75.1	0.000541
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	3	3	AY.9.1	0.000251
ORF1ab/nsp14A2-B	43	P43H	cCt	cAt	3	3	AY.99.2	0.000276
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	3	3	B	0.000383
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	3	3	B.1.1.101	0.03
ORF1ab/nsp14A2-B	43	P43F	CCt	TTt	3	3	B.1.1.214	0.000166
ORF1ab/nsp14A2-B	43	P43P	ccT	ccC	3	3	B.1.1.306	0.001315
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	3	3	B.1.1.316	0.002775
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	3	3	B.1.1.39	0.001529
ORF1ab/nsp14A2-B	43	P43A	Cct	Gct	3	3	B.1.1.7	0.000003
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	3	3	B.1.139	0.002199
ORF1ab/nsp14A2-B	43	P43P	ccT	ccC	3	3	B.1.160	0.000094
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	3	3	B.1.160.16	0.002788
ORF1ab/nsp14A2-B	43	P43P	ccT	ccA	3	3	B.1.177.86	0.00055
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	3	3	B.1.265	0.003812
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	3	3	B.1.36.10	0.014354
ORF1ab/nsp14A2-B	43	P43P	ccT	ccC	3	3	B.1.36.22	0.003623
ORF1ab/nsp14A2-B	43	P43P	ccT	ccC	2	3	B.1.429	0.000047
ORF1ab/nsp14A2-B	43	P43P	ccT	ccA	1	3	B.1.429	0.000024
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	3	3	B.1.524	0.004219
ORF1ab/nsp14A2-B	43	P43P	ccT	ccC	3	3	B.1.596	0.000261
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	3	3	B.1.621	0.000266
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	3	3	B.6	0.00273
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	3	3	C.1	0.007177
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	3	3	P.1.10	0.000808
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	3	3	P.1.13	0.002695
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	3	3	P.1.14	0.000143
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	3	3	P.1.15	0.000697
ORF1ab/nsp14A2-B	43	P43Y	CCT	TAC	2	2		0.111111
ORF1ab/nsp14A2-B	43	P43N	CCt	AAt	2	2		0.111111
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	2	2	A.1	0.000564
ORF1ab/nsp14A2-B	43	P43P	ccT	ccG	2	2	AD.2	0.000438
ORF1ab/nsp14A2-B	43	P43Y	CCT	TAC	2	2	All	0
ORF1ab/nsp14A2-B	43	P43R	cCt	cGt	2	2	All	0
ORF1ab/nsp14A2-B	43	P43del2	cCT	c--	1	2	All	0
ORF1ab/nsp14A2-B	43	P43del2	CCt	--t	1	2	All	0
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	2	2	AY.100	0.000092
ORF1ab/nsp14A2-B	43	P43H	cCt	cAt	2	2	AY.102	0.000053
ORF1ab/nsp14A2-B	43	P43P	ccT	ccC	2	2	AY.107	0.000932
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	2	2	AY.107	0.000932
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	2	2	AY.115	0.010417
ORF1ab/nsp14A2-B	43	P43P	ccT	ccA	2	2	AY.119	0.000071
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	2	2	AY.20	0.000078
ORF1ab/nsp14A2-B	43	P43del	CCT	---	2	2	AY.25	0.000012
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	2	2	AY.26	0.000057
ORF1ab/nsp14A2-B	43	P43P	ccT	ccA	2	2	AY.26	0.000057
ORF1ab/nsp14A2-B	43	P43H	cCt	cAt	2	2	AY.3	0.00002
ORF1ab/nsp14A2-B	43	P43P	ccT	ccC	2	2	AY.3	0.00002
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	2	2	AY.3.1	0.000171
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	2	2	AY.36	0.000296
ORF1ab/nsp14A2-B	43	P43del	CCT	---	2	2	AY.4.5	0.000215
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	2	2	AY.42	0.00008
ORF1ab/nsp14A2-B	43	P43P	ccT	ccA	1	2	AY.42	0.00004
ORF1ab/nsp14A2-B	43	P43P	ccT	ccC	1	2	AY.42	0.00004
ORF1ab/nsp14A2-B	43	P43H	cCt	cAt	2	2	AY.43	0.000009
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	2	2	AY.46	0.000208
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	2	2	AY.46.4	0.000329
ORF1ab/nsp14A2-B	43	P43P	ccT	ccA	1	2	AY.46.4	0.000165
ORF1ab/nsp14A2-B	43	P43P	ccT	ccC	1	2	AY.46.4	0.000165
ORF1ab/nsp14A2-B	43	P43P	ccT	ccC	2	2	AY.5.4	0.000553
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	2	2	AY.54	0.000191
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	2	2	AY.6	0.000082
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	2	2	AY.60	0.001876
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	2	2	AY.61	0.00021
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	2	2	AY.62	0.000871
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	2	2	AY.75.1	0.000361
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	2	2	AY.9.2	0.000073
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	2	2	AY.98.1	0.000097
ORF1ab/nsp14A2-B	43	P43T	Cct	Act	2	2	B.1	0.000018
ORF1ab/nsp14A2-B	43	P43A	Cct	Gct	2	2	B.1	0.000018
ORF1ab/nsp14A2-B	43	P43T	Cct	Act	2	2	B.1.1	0.000036
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	2	2	B.1.1.157	0.001826
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	2	2	B.1.1.217	0.007273
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	2	2	B.1.1.236	0.013793
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	2	2	B.1.1.312	0.003824
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	2	2	B.1.1.358	0.068966
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	2	2	B.1.1.376	0.011905
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	2	2	B.1.1.397	0.004505
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	2	2	B.1.1.432	0.002532
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	2	2	B.1.1.434	0.000697
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	2	2	B.1.1.63	0.000772
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	2	2	B.1.177.16	0.001329
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	2	2	B.1.177.81	0.000379
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	2	2	B.1.232	0.001075
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	2	2	B.1.336	0.004878
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	2	2	B.1.351.2	0.000605
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	2	2	B.1.391	0.002255
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	2	2	B.1.416	0.002538
ORF1ab/nsp14A2-B	43	P43H	cCt	cAt	2	2	B.1.497	0.00063
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	2	2	B.1.538	0.016129
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	2	2	B.1.564.1	0.003155
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	2	2	B.1.568	0.002222
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	2	2	B.1.575	0.000607
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	2	2	B.1.582	0.000981
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	2	2	B.1.582	0.000981
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	2	2	B.1.595	0.000522
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	2	2	B.1.617.1	0.000258
ORF1ab/nsp14A2-B	43	P43H	cCt	cAt	2	2	B.1.617.2	0.000008
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	2	2	B.1.78	0.017094
ORF1ab/nsp14A2-B	43	P43H	cCt	cAt	2	2	C.36	0.001821
ORF1ab/nsp14A2-B	43	P43P	ccT	ccC	2	2	C.36	0.001821
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	2	2	C.6	0.074074
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	2	2	D.2	0.00015
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	2	2	P.1.1	0.000635
ORF1ab/nsp14A2-B	43	P43H	cCt	cAt	2	2	P.1.14	0.000096
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	2	2	Q.4	0.00091
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	2	2	Q.8	0.00033
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	2	2	R.1	0.00018
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	2	2	R.1	0.00018
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	1	1	A.2	0.000662
ORF1ab/nsp14A2-B	43	P43P	ccT	ccC	1	1	A.2	0.000662
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	1	1	A.2.2	0.001689
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	1	1	A.2.5	0.000499
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	1	1	A.23.1	0.000704
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	1	1	A.3	0.002096
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	1	1	AL.1	0.012987
ORF1ab/nsp14A2-B	43	P43del1	ccT	cc-	1	1	All	0
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	1	1	AY.1	0.000396
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	1	1	AY.10	0.00053
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	1	1	AY.102	0.000027
ORF1ab/nsp14A2-B	43	P43P	ccT	ccC	1	1	AY.102	0.000027
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	1	1	AY.104	0.001984
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	1	1	AY.105	0.000643
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	1	1	AY.109	0.00074
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	1	1	AY.110	0.000113
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	1	1	AY.110	0.000113
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	1	1	AY.116	0.000287
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	1	1	AY.117	0.000085
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	1	1	AY.117	0.000085
ORF1ab/nsp14A2-B	43	P43P	ccT	ccA	1	1	AY.118	0.000063
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	1	1	AY.118	0.000063
ORF1ab/nsp14A2-B	43	P43H	cCt	cAt	1	1	AY.119	0.000035
ORF1ab/nsp14A2-B	43	P43H	cCt	cAt	1	1	AY.12	0.000316
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	1	1	AY.12	0.000316
ORF1ab/nsp14A2-B	43	P43P	ccT	ccC	1	1	AY.120	0.000037
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	1	1	AY.120.1	0.000321
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	1	1	AY.120.2	0.001285
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	1	1	AY.13	0.000161
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	1	1	AY.14	0.000088
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	1	1	AY.14	0.000088
ORF1ab/nsp14A2-B	43	P43P	ccT	ccC	1	1	AY.16.1	0.00047
ORF1ab/nsp14A2-B	43	P43del	CCT	---	1	1	AY.20	0.000039
ORF1ab/nsp14A2-B	43	P43F	CCt	TTt	1	1	AY.21	0.001898
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	1	1	AY.22	0.002092
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	1	1	AY.23.1	0.000417
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	1	1	AY.23.1	0.000417
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	1	1	AY.24	0.000431
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	1	1	AY.24	0.000431
ORF1ab/nsp14A2-B	43	P43P	ccT	ccA	1	1	AY.33	0.000067
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	1	1	AY.34.1	0.00051
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	1	1	AY.36	0.000148
ORF1ab/nsp14A2-B	43	P43H	cCt	cAt	1	1	AY.38	0.000499
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	1	1	AY.38	0.000499
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	1	1	AY.39.1	0.00004
ORF1ab/nsp14A2-B	43	P43H	cCt	cAt	1	1	AY.39.2	0.001541
ORF1ab/nsp14A2-B	43	P43A	Cct	Gct	1	1	AY.4	0.000002
ORF1ab/nsp14A2-B	43	P43del	CCT	---	1	1	AY.4	0.000002
ORF1ab/nsp14A2-B	43	P43H	cCt	cAt	1	1	AY.4.1	0.000737
ORF1ab/nsp14A2-B	43	P43H	cCt	cAt	1	1	AY.4.2	0.000022
ORF1ab/nsp14A2-B	43	P43H	cCt	cAt	1	1	AY.4.2.1	0.000149
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	1	1	AY.4.2.1	0.000149
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	1	1	AY.4.3	0.000842
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	1	1	AY.4.5	0.000107
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	1	1	AY.4.5	0.000107
ORF1ab/nsp14A2-B	43	P43del2	cCT	c--	1	1	AY.4.5	0.000107
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	1	1	AY.40	0.000964
ORF1ab/nsp14A2-B	43	P43A	Cct	Gct	1	1	AY.43	0.000004
ORF1ab/nsp14A2-B	43	P43del2	CCt	--t	1	1	AY.43	0.000004
ORF1ab/nsp14A2-B	43	P43del	CCT	---	1	1	AY.43	0.000004
ORF1ab/nsp14A2-B	43	P43H	cCt	cAt	1	1	AY.46	0.000104
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	1	1	AY.46.1	0.001027
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	1	1	AY.46.3	0.000934
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	1	1	AY.46.4	0.000165
ORF1ab/nsp14A2-B	43	P43P	ccT	ccC	1	1	AY.46.6	0.000072
ORF1ab/nsp14A2-B	43	P43P	ccT	ccC	1	1	AY.47	0.000031
ORF1ab/nsp14A2-B	43	P43H	cCt	cAt	1	1	AY.5	0.000021
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	1	1	AY.5.3	0.000337
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	1	1	AY.5.4	0.000277
ORF1ab/nsp14A2-B	43	P43del	CCT	---	1	1	AY.52	0.000814
ORF1ab/nsp14A2-B	43	P43P	ccT	ccC	1	1	AY.53	0.000288
ORF1ab/nsp14A2-B	43	P43H	cCt	cAt	1	1	AY.53	0.000288
ORF1ab/nsp14A2-B	43	P43H	cCt	cAt	1	1	AY.54	0.000095
ORF1ab/nsp14A2-B	43	P43P	ccT	ccG	1	1	AY.59	0.00053
ORF1ab/nsp14A2-B	43	P43H	cCt	cAt	1	1	AY.59	0.00053
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	1	1	AY.59	0.00053
ORF1ab/nsp14A2-B	43	P43P	ccT	ccA	1	1	AY.6	0.000041
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	1	1	AY.61	0.000105
ORF1ab/nsp14A2-B	43	P43P	ccT	ccA	1	1	AY.61	0.000105
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	1	1	AY.68	0.000274
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	1	1	AY.7	0.000196
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	1	1	AY.7.1	0.000113
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	1	1	AY.74	0.000116
ORF1ab/nsp14A2-B	43	P43del	CCT	---	1	1	AY.75	0.000056
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	1	1	AY.75	0.000056
ORF1ab/nsp14A2-B	43	P43P	ccT	ccC	1	1	AY.75	0.000056
ORF1ab/nsp14A2-B	43	P43T	Cct	Act	1	1	AY.75.1	0.00018
ORF1ab/nsp14A2-B	43	P43H	cCt	cAt	1	1	AY.75.1	0.00018
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	1	1	AY.79	0.001211
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	1	1	AY.80	0.001129
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	1	1	AY.83	0.001724
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	1	1	AY.87	0.000833
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	1	1	AY.9	0.000068
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	1	1	AY.9.2	0.000037
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	1	1	AY.92	0.000287
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	1	1	AY.93	0.000273
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	1	1	AY.98	0.000079
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	1	1	AY.98	0.000079
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	1	1	AY.98.1	0.000048
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	1	1	AY.99	0.001049
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	1	1	AY.99.1	0.001553
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	1	1	AY.99.2	0.000092
ORF1ab/nsp14A2-B	43	P43P	ccT	ccC	1	1	AY.99.2	0.000092
ORF1ab/nsp14A2-B	43	P43R	cCt	cGt	1	1	B.1	0.000009
ORF1ab/nsp14A2-B	43	P43N	CCt	AAt	1	1	B.1	0.000009
ORF1ab/nsp14A2-B	43	P43del	CCT	---	1	1	B.1.1	0.000018
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	1	1	B.1.1.1	0.000327
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	1	1	B.1.1.1	0.000327
ORF1ab/nsp14A2-B	43	P43P	ccT	ccC	1	1	B.1.1.10	0.001115
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	1	1	B.1.1.111	0.014706
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	1	1	B.1.1.115	0.008929
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	1	1	B.1.1.15	0.013514
ORF1ab/nsp14A2-B	43	P43T	Cct	Act	1	1	B.1.1.194	0.00495
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	1	1	B.1.1.196	0.005714
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	1	1	B.1.1.198	0.001468
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	1	1	B.1.1.203	0.016949
ORF1ab/nsp14A2-B	43	P43H	cCt	cAt	1	1	B.1.1.207	0.001182
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	1	1	B.1.1.216	0.00089
ORF1ab/nsp14A2-B	43	P43H	cCt	cAt	1	1	B.1.1.219	0.005
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	1	1	B.1.1.220	0.001859
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	1	1	B.1.1.228	0.003049
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	1	1	B.1.1.25	0.000569
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	1	1	B.1.1.253	0.002506
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	1	1	B.1.1.258	0.003257
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	1	1	B.1.1.263	0.001558
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	1	1	B.1.1.263	0.001558
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	1	1	B.1.1.286	0.002899
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	1	1	B.1.1.303	0.002762
ORF1ab/nsp14A2-B	43	P43T	Cct	Act	1	1	B.1.1.306	0.000438
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	1	1	B.1.1.318	0.000302
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	1	1	B.1.1.333	0.001076
ORF1ab/nsp14A2-B	43	P43P	ccT	ccA	1	1	B.1.1.348	0.000796
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	1	1	B.1.1.348	0.000796
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	1	1	B.1.1.354	0.004386
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	1	1	B.1.1.372	0.000689
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	1	1	B.1.1.384	0.02381
ORF1ab/nsp14A2-B	43	P43H	cCt	cAt	1	1	B.1.1.39	0.00051
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	1	1	B.1.1.409	0.002833
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	1	1	B.1.1.434	0.000349
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	1	1	B.1.1.448	0.002033
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	1	1	B.1.1.448	0.002033
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	1	1	B.1.1.464	0.001473
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	1	1	B.1.1.507	0.008696
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	1	1	B.1.1.525	0.005464
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	1	1	B.1.1.54	0.003021
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	1	1	B.1.1.63	0.000386
ORF1ab/nsp14A2-B	43	P43del1	ccT	cc-	1	1	B.1.1.7	0.000001
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	1	1	B.1.126	0.001276
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	1	1	B.1.140	0.018868
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	1	1	B.1.164	0.014925
ORF1ab/nsp14A2-B	43	P43H	cCt	cAt	1	1	B.1.177	0.000013
ORF1ab/nsp14A2-B	43	P43P	ccT	ccC	1	1	B.1.177	0.000013
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	1	1	B.1.177.19	0.001431
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	1	1	B.1.177.4	0.000211
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	1	1	B.1.177.55	0.002331
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	1	1	B.1.177.56	0.000668
ORF1ab/nsp14A2-B	43	P43del	CCT	---	1	1	B.1.177.57	0.000281
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	1	1	B.1.177.60	0.000218
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	1	1	B.1.177.60	0.000218
ORF1ab/nsp14A2-B	43	P43del	CCT	---	1	1	B.1.177.68	0.015152
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	1	1	B.1.177.73	0.000566
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	1	1	B.1.177.77	0.000726
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	1	1	B.1.177.85	0.005435
ORF1ab/nsp14A2-B	43	P43A	Cct	Gct	1	1	B.1.2	0.000009
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	1	1	B.1.221.3	0.000833
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	1	1	B.1.223	0.002778
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	1	1	B.1.235	0.002519
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	1	1	B.1.239	0.001221
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	1	1	B.1.241	0.000812
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	1	1	B.1.250	0.014493
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	1	1	B.1.258.17	0.000104
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	1	1	B.1.258.17	0.000104
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	1	1	B.1.279	0.000514
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	1	1	B.1.298	0.002114
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	1	1	B.1.298	0.002114
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	1	1	B.1.311	0.000275
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	1	1	B.1.325	0.006897
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	1	1	B.1.349	0.000715
ORF1ab/nsp14A2-B	43	P43H	cCt	cAt	1	1	B.1.351	0.00003
ORF1ab/nsp14A2-B	43	P43P	ccT	ccG	1	1	B.1.351.2	0.000303
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	1	1	B.1.356	0.001727
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	1	1	B.1.36	0.000146
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	1	1	B.1.36.1	0.00114
ORF1ab/nsp14A2-B	43	P43P	ccT	ccC	1	1	B.1.36.10	0.004785
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	1	1	B.1.36.18	0.00042
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	1	1	B.1.36.18	0.00042
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	1	1	B.1.36.26	0.002857
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	1	1	B.1.36.37	0.002778
ORF1ab/nsp14A2-B	43	P43F	CCt	TTt	1	1	B.1.361	0.001289
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	1	1	B.1.378	0.006849
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	1	1	B.1.380	0.006623
ORF1ab/nsp14A2-B	43	P43P	ccT	ccC	1	1	B.1.396	0.000706
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	1	1	B.1.396	0.000706
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	1	1	B.1.413	0.004255
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	1	1	B.1.416.1	0.001563
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	1	1	B.1.428	0.00102
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	1	1	B.1.433	0.003195
ORF1ab/nsp14A2-B	43	P43P	ccT	ccA	1	1	B.1.450	0.011364
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	1	1	B.1.456	0.003268
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	1	1	B.1.466.2	0.000391
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	1	1	B.1.497	0.000315
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	1	1	B.1.501	0.007353
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	1	1	B.1.503	0.002488
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	1	1	B.1.517	0.000427
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	1	1	B.1.525	0.000113
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	1	1	B.1.544	0.006024
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	1	1	B.1.545	0.014493
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	1	1	B.1.551	0.00129
ORF1ab/nsp14A2-B	43	P43del	CCT	---	1	1	B.1.561	0.000397
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	1	1	B.1.561	0.000397
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	1	1	B.1.564	0.000426
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	1	1	B.1.575.1	0.002439
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	1	1	B.1.576	0.000907
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	1	1	B.1.577	0.000687
ORF1ab/nsp14A2-B	43	P43F	CCt	TTt	1	1	B.1.580	0.004065
ORF1ab/nsp14A2-B	43	P43del	CCT	---	1	1	B.1.582	0.000491
ORF1ab/nsp14A2-B	43	P43T	Cct	Act	1	1	B.1.596	0.000087
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	1	1	B.1.597	0.00463
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	1	1	B.1.599	0.00365
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	1	1	B.1.609	0.000479
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	1	1	B.1.609	0.000479
ORF1ab/nsp14A2-B	43	P43A	Cct	Gct	1	1	B.1.617.1	0.000129
ORF1ab/nsp14A2-B	43	P43P	ccT	ccC	1	1	B.1.621	0.000089
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	1	1	B.1.628	0.000352
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	1	1	B.1.636	0.006711
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	1	1	B.1.9.5	0.005682
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	1	1	B.1.91	0.002075
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	1	1	B.28	0.003279
ORF1ab/nsp14A2-B	43	P43T	Cct	Act	1	1	B.3	0.000831
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	1	1	B.6.1	0.026316
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	1	1	B.6.6	0.000889
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	1	1	C.36	0.000911
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	1	1	D.2	0.000075
ORF1ab/nsp14A2-B	43	P43R	cCt	cGt	1	1	D.2	0.000075
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	1	1	D.5	0.004975
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	1	1	N.6	0.007092
ORF1ab/nsp14A2-B	43	P43del	CCT	---	1	1	P.1	0.000016
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	1	1	P.1.10	0.000269
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	1	1	P.1.14	0.000048
ORF1ab/nsp14A2-B	43	P43P	ccT	ccA	1	1	P.1.14	0.000048
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	1	1	P.1.17	0.000162
ORF1ab/nsp14A2-B	43	P43P	ccT	ccA	1	1	P.1.17.1	0.000875
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	1	1	P.1.17.1	0.000875
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	1	1	P.1.7	0.000319
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	1	1	P.2	0.000187
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	1	1	P.2	0.000187
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	1	1	P.3	0.001595
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	1	1	P.6	0.003145
ORF1ab/nsp14A2-B	43	P43A	Cct	Gct	1	1	Q.1	0.000126
ORF1ab/nsp14A2-B	43	P43S	Cct	Tct	1	1	Q.3	0.000145
ORF1ab/nsp14A2-B	43	P43L	cCt	cTt	1	1	Q.3	0.000145

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.