CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp14A2-B | 417 | G417del | G6342del | del | GGC | --- | 422 | 422 | 1 | 19288-19290 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp14A2-B | 417 | G417del | GGC | --- | 422 | 422 | All | 0.000081 |
ORF1ab/nsp14A2-B | 417 | G417del | GGC | --- | 99 | 99 | B.1.2 | 0.000872 |
ORF1ab/nsp14A2-B | 417 | G417del | GGC | --- | 54 | 54 | B.1.1.7 | 0.000048 |
ORF1ab/nsp14A2-B | 417 | G417del | GGC | --- | 41 | 41 | B.1 | 0.000376 |
ORF1ab/nsp14A2-B | 417 | G417del | GGC | --- | 20 | 20 | B.1.1 | 0.000363 |
ORF1ab/nsp14A2-B | 417 | G417del | GGC | --- | 18 | 18 | B.1.596 | 0.001568 |
ORF1ab/nsp14A2-B | 417 | G417del | GGC | --- | 13 | 13 | B.1.177 | 0.000171 |
ORF1ab/nsp14A2-B | 417 | G417del | GGC | --- | 13 | 13 | B.1.351 | 0.000386 |
ORF1ab/nsp14A2-B | 417 | G417del | GGC | --- | 10 | 10 | B.1.526 | 0.000235 |
ORF1ab/nsp14A2-B | 417 | G417del | GGC | --- | 9 | 9 | B.1.429 | 0.000212 |
ORF1ab/nsp14A2-B | 417 | G417del | GGC | --- | 9 | 9 | B.1.617.2 | 0.000034 |
ORF1ab/nsp14A2-B | 417 | G417del | GGC | --- | 8 | 8 | B.1.265 | 0.010165 |
ORF1ab/nsp14A2-B | 417 | G417del | GGC | --- | 6 | 6 | AY.103 | 0.000037 |
ORF1ab/nsp14A2-B | 417 | G417del | GGC | --- | 6 | 6 | B.1.1.37 | 0.001157 |
ORF1ab/nsp14A2-B | 417 | G417del | GGC | --- | 6 | 6 | B.1.221 | 0.000426 |
ORF1ab/nsp14A2-B | 417 | G417del | GGC | --- | 6 | 6 | B.1.243 | 0.000418 |
ORF1ab/nsp14A2-B | 417 | G417del | GGC | --- | 4 | 4 | AD.2 | 0.000876 |
ORF1ab/nsp14A2-B | 417 | G417del | GGC | --- | 4 | 4 | AY.43 | 0.000018 |
ORF1ab/nsp14A2-B | 417 | G417del | GGC | --- | 4 | 4 | AY.44 | 0.000024 |
ORF1ab/nsp14A2-B | 417 | G417del | GGC | --- | 3 | 3 | AY.25 | 0.000018 |
ORF1ab/nsp14A2-B | 417 | G417del | GGC | --- | 3 | 3 | B.1.517 | 0.001281 |
ORF1ab/nsp14A2-B | 417 | G417del | GGC | --- | 3 | 3 | B.1.595 | 0.000783 |
ORF1ab/nsp14A2-B | 417 | G417del | GGC | --- | 2 | 2 | AY.118 | 0.000125 |
ORF1ab/nsp14A2-B | 417 | G417del | GGC | --- | 2 | 2 | AY.16.1 | 0.00094 |
ORF1ab/nsp14A2-B | 417 | G417del | GGC | --- | 2 | 2 | AY.26 | 0.000057 |
ORF1ab/nsp14A2-B | 417 | G417del | GGC | --- | 2 | 2 | B.1.1.174 | 0.006757 |
ORF1ab/nsp14A2-B | 417 | G417del | GGC | --- | 2 | 2 | B.1.1.194 | 0.009901 |
ORF1ab/nsp14A2-B | 417 | G417del | GGC | --- | 2 | 2 | B.1.1.277 | 0.001517 |
ORF1ab/nsp14A2-B | 417 | G417del | GGC | --- | 2 | 2 | B.1.1.416 | 0.00181 |
ORF1ab/nsp14A2-B | 417 | G417del | GGC | --- | 2 | 2 | B.1.1.434 | 0.000697 |
ORF1ab/nsp14A2-B | 417 | G417del | GGC | --- | 2 | 2 | B.1.110.3 | 0.001437 |
ORF1ab/nsp14A2-B | 417 | G417del | GGC | --- | 2 | 2 | B.1.36 | 0.000292 |
ORF1ab/nsp14A2-B | 417 | G417del | GGC | --- | 2 | 2 | B.1.568 | 0.002222 |
ORF1ab/nsp14A2-B | 417 | G417del | GGC | --- | 2 | 2 | P.1.15 | 0.000465 |
ORF1ab/nsp14A2-B | 417 | G417del | GGC | --- | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp14A2-B | 417 | G417del | GGC | --- | 1 | 1 | AY.107 | 0.000466 |
ORF1ab/nsp14A2-B | 417 | G417del | GGC | --- | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp14A2-B | 417 | G417del | GGC | --- | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp14A2-B | 417 | G417del | GGC | --- | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp14A2-B | 417 | G417del | GGC | --- | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp14A2-B | 417 | G417del | GGC | --- | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp14A2-B | 417 | G417del | GGC | --- | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp14A2-B | 417 | G417del | GGC | --- | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp14A2-B | 417 | G417del | GGC | --- | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp14A2-B | 417 | G417del | GGC | --- | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp14A2-B | 417 | G417del | GGC | --- | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp14A2-B | 417 | G417del | GGC | --- | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp14A2-B | 417 | G417del | GGC | --- | 1 | 1 | B.1.1.192 | 0.002309 |
ORF1ab/nsp14A2-B | 417 | G417del | GGC | --- | 1 | 1 | B.1.1.207 | 0.001182 |
ORF1ab/nsp14A2-B | 417 | G417del | GGC | --- | 1 | 1 | B.1.1.218 | 0.007692 |
ORF1ab/nsp14A2-B | 417 | G417del | GGC | --- | 1 | 1 | B.1.1.232 | 0.001815 |
ORF1ab/nsp14A2-B | 417 | G417del | GGC | --- | 1 | 1 | B.1.1.241 | 0.00207 |
ORF1ab/nsp14A2-B | 417 | G417del | GGC | --- | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp14A2-B | 417 | G417del | GGC | --- | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp14A2-B | 417 | G417del | GGC | --- | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp14A2-B | 417 | G417del | GGC | --- | 1 | 1 | B.1.1.44 | 0.00241 |
ORF1ab/nsp14A2-B | 417 | G417del | GGC | --- | 1 | 1 | B.1.1.448 | 0.002033 |
ORF1ab/nsp14A2-B | 417 | G417del | GGC | --- | 1 | 1 | B.1.1.517 | 0.006803 |
ORF1ab/nsp14A2-B | 417 | G417del | GGC | --- | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp14A2-B | 417 | G417del | GGC | --- | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp14A2-B | 417 | G417del | GGC | --- | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp14A2-B | 417 | G417del | GGC | --- | 1 | 1 | B.1.177.50 | 0.004695 |
ORF1ab/nsp14A2-B | 417 | G417del | GGC | --- | 1 | 1 | B.1.177.62 | 0.001192 |
ORF1ab/nsp14A2-B | 417 | G417del | GGC | --- | 1 | 1 | B.1.177.68 | 0.015152 |
ORF1ab/nsp14A2-B | 417 | G417del | GGC | --- | 1 | 1 | B.1.177.75 | 0.001041 |
ORF1ab/nsp14A2-B | 417 | G417del | GGC | --- | 1 | 1 | B.1.177.87 | 0.000728 |
ORF1ab/nsp14A2-B | 417 | G417del | GGC | --- | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp14A2-B | 417 | G417del | GGC | --- | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp14A2-B | 417 | G417del | GGC | --- | 1 | 1 | B.1.258.3 | 0.001675 |
ORF1ab/nsp14A2-B | 417 | G417del | GGC | --- | 1 | 1 | B.1.284 | 0.013158 |
ORF1ab/nsp14A2-B | 417 | G417del | GGC | --- | 1 | 1 | B.1.349 | 0.000715 |
ORF1ab/nsp14A2-B | 417 | G417del | GGC | --- | 1 | 1 | B.1.36.35 | 0.002604 |
ORF1ab/nsp14A2-B | 417 | G417del | GGC | --- | 1 | 1 | B.1.398 | 0.002976 |
ORF1ab/nsp14A2-B | 417 | G417del | GGC | --- | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp14A2-B | 417 | G417del | GGC | --- | 1 | 1 | B.1.416.1 | 0.001563 |
ORF1ab/nsp14A2-B | 417 | G417del | GGC | --- | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp14A2-B | 417 | G417del | GGC | --- | 1 | 1 | B.1.433 | 0.003195 |
ORF1ab/nsp14A2-B | 417 | G417del | GGC | --- | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp14A2-B | 417 | G417del | GGC | --- | 1 | 1 | B.1.551 | 0.00129 |
ORF1ab/nsp14A2-B | 417 | G417del | GGC | --- | 1 | 1 | B.1.575 | 0.000303 |
ORF1ab/nsp14A2-B | 417 | G417del | GGC | --- | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp14A2-B | 417 | G417del | GGC | --- | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp14A2-B | 417 | G417del | GGC | --- | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp14A2-B | 417 | G417del | GGC | --- | 1 | 1 | B.1.9.5 | 0.005682 |
ORF1ab/nsp14A2-B | 417 | G417del | GGC | --- | 1 | 1 | B.55 | 0.00295 |
ORF1ab/nsp14A2-B | 417 | G417del | GGC | --- | 1 | 1 | B.58 | 0.010204 |
ORF1ab/nsp14A2-B | 417 | G417del | GGC | --- | 1 | 1 | C.5 | 0.090909 |
ORF1ab/nsp14A2-B | 417 | G417del | GGC | --- | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp14A2-B | 417 | G417del | GGC | --- | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp14A2-B | 417 | G417del | GGC | --- | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp14A2-B | 417 | G417del | GGC | --- | 1 | 1 | Q.3 | 0.000145 |
ORF1ab/nsp14A2-B | 417 | G417del | GGC | --- | 1 | 1 | R.1 | 0.00009 |
ORF1ab/nsp14A2-B | 417 | G417del | GGC | --- | 1 | 1 | W.1 | 0.008696 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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