CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp14A2-B : CodonNum = 417

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF1ab/nsp14A2-B	417	G417G	G6342G	syn	ggC	ggT	1144	1124	0.982517	19288-19290
ORF1ab/nsp14A2-B	417	G417G	G6342G	syn	ggC	ggA	1144	14	0.0122378	19288-19290
ORF1ab/nsp14A2-B	417	G417G	G6342G	syn	ggC	ggG	1144	6	0.00524476	19288-19290
ORF1ab/nsp14A2-B	417	G417del	G6342del	del	GGC	---	422	422	1	19288-19290
ORF1ab/nsp14A2-B	417	G417V	G6342V	nonsyn	gGc	gTc	116	115	0.991379	19288-19290
ORF1ab/nsp14A2-B	417	G417V	G6342V	nonsyn	gGC	gTG	116	1	0.00862069	19288-19290
ORF1ab/nsp14A2-B	417	G417D	G6342D	nonsyn	gGc	gAc	80	80	1	19288-19290
ORF1ab/nsp14A2-B	417	G417del2	G6342del2	del	gGC	g--	75	75	1	19288-19290
ORF1ab/nsp14A2-B	417	G417del1	G6342del1	del	ggC	gg-	60	45	0.75	19288-19290
ORF1ab/nsp14A2-B	417	G417del1	G6342del1	del	Ggc	-gc	60	9	0.15	19288-19290
ORF1ab/nsp14A2-B	417	G417del1	G6342del1	del	GgC	-gN	60	4	0.0666667	19288-19290
ORF1ab/nsp14A2-B	417	G417del1	G6342del1	del	GGC	-NN	60	2	0.0333333	19288-19290
ORF1ab/nsp14A2-B	417	G417S	G6342S	nonsyn	Ggc	Agc	33	31	0.939394	19288-19290
ORF1ab/nsp14A2-B	417	G417S	G6342S	nonsyn	GgC	AgT	33	2	0.0606061	19288-19290
ORF1ab/nsp14A2-B	417	G417C	G6342C	nonsyn	Ggc	Tgc	18	17	0.944444	19288-19290
ORF1ab/nsp14A2-B	417	G417C	G6342C	nonsyn	GgC	TgT	18	1	0.0555556	19288-19290
ORF1ab/nsp14A2-B	417	G417A	G6342A	nonsyn	gGc	gCc	9	8	0.888889	19288-19290
ORF1ab/nsp14A2-B	417	G417A	G6342A	nonsyn	gGC	gCT	9	1	0.111111	19288-19290
ORF1ab/nsp14A2-B	417	G417R	G6342R	nonsyn	Ggc	Cgc	6	5	0.833333	19288-19290
ORF1ab/nsp14A2-B	417	G417R	G6342R	nonsyn	GgC	AgA	6	1	0.166667	19288-19290
ORF1ab/nsp14A2-B	417	G417E	G6342E	nonsyn	gGC	gAG	2	1	0.5	19288-19290
ORF1ab/nsp14A2-B	417	G417E	G6342E	nonsyn	gGC	gAA	2	1	0.5	19288-19290
ORF1ab/nsp14A2-B	417	G417L	G6342L	nonsyn	GGC	TTG	1	1	1	19288-19290
ORF1ab/nsp14A2-B	417	G417N	G6342N	nonsyn	GGc	AAc	1	1	1	19288-19290
ORF1ab/nsp14A2-B	417	G417K	G6342K	nonsyn	GGC	AAA	1	1	1	19288-19290
ORF1ab/nsp14A2-B	417	G417T	G6342T	nonsyn	GGC	ACT	1	1	1	19288-19290

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF1ab/nsp14A2-B	417	G417G	ggC	ggT	1124	1144	All	0.000215
ORF1ab/nsp14A2-B	417	G417G	ggC	ggA	14	1144	All	0.000003
ORF1ab/nsp14A2-B	417	G417G	ggC	ggG	6	1144	All	0.000001
ORF1ab/nsp14A2-B	417	G417del	GGC	---	422	422	All	0.000081
ORF1ab/nsp14A2-B	417	G417G	ggC	ggT	264	266	B.1.1.7	0.000236
ORF1ab/nsp14A2-B	417	G417G	ggC	ggA	2	266	B.1.1.7	0.000002
ORF1ab/nsp14A2-B	417	G417G	ggC	ggT	175	175	B.1.241	0.142045
ORF1ab/nsp14A2-B	417	G417G	ggC	ggT	119	120	AY.4	0.000185
ORF1ab/nsp14A2-B	417	G417G	ggC	ggA	1	120	AY.4	0.000002
ORF1ab/nsp14A2-B	417	G417G	ggC	ggT	113	117	B.1.617.2	0.000425
ORF1ab/nsp14A2-B	417	G417G	ggC	ggG	2	117	B.1.617.2	0.000008
ORF1ab/nsp14A2-B	417	G417G	ggC	ggA	2	117	B.1.617.2	0.000008
ORF1ab/nsp14A2-B	417	G417V	gGc	gTc	115	116	All	0.000022
ORF1ab/nsp14A2-B	417	G417V	gGC	gTG	1	116	All	0
ORF1ab/nsp14A2-B	417	G417del	GGC	---	99	99	B.1.2	0.000872
ORF1ab/nsp14A2-B	417	G417D	gGc	gAc	80	80	All	0.000015
ORF1ab/nsp14A2-B	417	G417del2	gGC	g--	75	75	All	0.000014
ORF1ab/nsp14A2-B	417	G417G	ggC	ggT	64	64	B.1.1.461	0.771084
ORF1ab/nsp14A2-B	417	G417del1	ggC	gg-	45	60	All	0.000009
ORF1ab/nsp14A2-B	417	G417del1	Ggc	-gc	9	60	All	0.000002
ORF1ab/nsp14A2-B	417	G417del1	GgC	-gN	4	60	All	0.000001
ORF1ab/nsp14A2-B	417	G417del1	GGC	-NN	2	60	All	0
ORF1ab/nsp14A2-B	417	G417V	gGc	gTc	57	57	D.2	0.004277
ORF1ab/nsp14A2-B	417	G417G	ggC	ggT	57	57	P.1	0.000898
ORF1ab/nsp14A2-B	417	G417del	GGC	---	54	54	B.1.1.7	0.000048
ORF1ab/nsp14A2-B	417	G417D	gGc	gAc	49	49	B.1.497	0.015423
ORF1ab/nsp14A2-B	417	G417G	ggC	ggT	44	44	B.1.1.374	0.104513
ORF1ab/nsp14A2-B	417	G417del	GGC	---	41	41	B.1	0.000376
ORF1ab/nsp14A2-B	417	G417S	Ggc	Agc	31	33	All	0.000006
ORF1ab/nsp14A2-B	417	G417S	GgC	AgT	2	33	All	0
ORF1ab/nsp14A2-B	417	G417del2	gGC	g--	22	22	B.1.2	0.000194
ORF1ab/nsp14A2-B	417	G417G	ggC	ggT	19	20	AY.43	0.000084
ORF1ab/nsp14A2-B	417	G417G	ggC	ggA	1	20	AY.43	0.000004
ORF1ab/nsp14A2-B	417	G417del	GGC	---	20	20	B.1.1	0.000363
ORF1ab/nsp14A2-B	417	G417G	ggC	ggT	17	19	B.1	0.000156
ORF1ab/nsp14A2-B	417	G417G	ggC	ggA	1	19	B.1	0.000009
ORF1ab/nsp14A2-B	417	G417G	ggC	ggG	1	19	B.1	0.000009
ORF1ab/nsp14A2-B	417	G417C	Ggc	Tgc	17	18	All	0.000003
ORF1ab/nsp14A2-B	417	G417C	GgC	TgT	1	18	All	0
ORF1ab/nsp14A2-B	417	G417del	GGC	---	18	18	B.1.596	0.001568
ORF1ab/nsp14A2-B	417	G417V	gGc	gTc	16	16	AY.43	0.000071
ORF1ab/nsp14A2-B	417	G417S	Ggc	Agc	16	16	B.1.258	0.001065
ORF1ab/nsp14A2-B	417	G417G	ggC	ggT	16	16	B.1.429	0.000376
ORF1ab/nsp14A2-B	417	G417del1	ggC	gg-	12	15	B.1.2	0.000106
ORF1ab/nsp14A2-B	417	G417del1	Ggc	-gc	2	15	B.1.2	0.000018
ORF1ab/nsp14A2-B	417	G417del1	GgC	-gN	1	15	B.1.2	0.000009
ORF1ab/nsp14A2-B	417	G417G	ggC	ggT	14	14	AY.120	0.000521
ORF1ab/nsp14A2-B	417	G417del	GGC	---	13	13	B.1.177	0.000171
ORF1ab/nsp14A2-B	417	G417del	GGC	---	13	13	B.1.351	0.000386
ORF1ab/nsp14A2-B	417	G417G	ggC	ggT	13	13	B.1.36.19	0.12037
ORF1ab/nsp14A2-B	417	G417G	ggC	ggT	12	12	AY.44	0.000073
ORF1ab/nsp14A2-B	417	G417G	ggC	ggT	12	12	B.1.36.25	0.02649
ORF1ab/nsp14A2-B	417	G417del2	gGC	g--	10	10	B.1.1.7	0.000009
ORF1ab/nsp14A2-B	417	G417del	GGC	---	10	10	B.1.526	0.000235
ORF1ab/nsp14A2-B	417	G417A	gGc	gCc	8	9	All	0.000002
ORF1ab/nsp14A2-B	417	G417A	gGC	gCT	1	9	All	0
ORF1ab/nsp14A2-B	417	G417G	ggC	ggT	6	9	AY.25	0.000036
ORF1ab/nsp14A2-B	417	G417G	ggC	ggA	3	9	AY.25	0.000018
ORF1ab/nsp14A2-B	417	G417G	ggC	ggT	9	9	AY.47	0.00028
ORF1ab/nsp14A2-B	417	G417G	ggC	ggT	9	9	B.1.177	0.000119
ORF1ab/nsp14A2-B	417	G417del	GGC	---	9	9	B.1.429	0.000212
ORF1ab/nsp14A2-B	417	G417del	GGC	---	9	9	B.1.617.2	0.000034
ORF1ab/nsp14A2-B	417	G417G	ggC	ggT	9	9	P.1.14	0.00043
ORF1ab/nsp14A2-B	417	G417S	Ggc	Agc	6	8	B.1.1.7	0.000005
ORF1ab/nsp14A2-B	417	G417S	GgC	AgT	2	8	B.1.1.7	0.000002
ORF1ab/nsp14A2-B	417	G417del	GGC	---	8	8	B.1.265	0.010165
ORF1ab/nsp14A2-B	417	G417G	ggC	ggT	7	7	AY.118	0.000439
ORF1ab/nsp14A2-B	417	G417D	gGc	gAc	7	7	B.1.1.7	0.000006
ORF1ab/nsp14A2-B	417	G417G	ggC	ggT	7	7	B.1.2	0.000062
ORF1ab/nsp14A2-B	417	G417G	ggC	ggT	7	7	B.1.637	0.000512
ORF1ab/nsp14A2-B	417	G417R	Ggc	Cgc	5	6	All	0.000001
ORF1ab/nsp14A2-B	417	G417R	GgC	AgA	1	6	All	0
ORF1ab/nsp14A2-B	417	G417G	ggC	ggT	6	6	AY.103	0.000037
ORF1ab/nsp14A2-B	417	G417del	GGC	---	6	6	AY.103	0.000037
ORF1ab/nsp14A2-B	417	G417del2	gGC	g--	6	6	AY.25	0.000036
ORF1ab/nsp14A2-B	417	G417del	GGC	---	6	6	B.1.1.37	0.001157
ORF1ab/nsp14A2-B	417	G417G	ggC	ggT	6	6	B.1.1.433	0.008547
ORF1ab/nsp14A2-B	417	G417C	Ggc	Tgc	5	6	B.1.1.7	0.000004
ORF1ab/nsp14A2-B	417	G417C	GgC	TgT	1	6	B.1.1.7	0.000001
ORF1ab/nsp14A2-B	417	G417del	GGC	---	6	6	B.1.221	0.000426
ORF1ab/nsp14A2-B	417	G417del	GGC	---	6	6	B.1.243	0.000418
ORF1ab/nsp14A2-B	417	G417G	ggC	ggT	5	5	AY.33	0.000334
ORF1ab/nsp14A2-B	417	G417del1	ggC	gg-	5	5	B.1.1.7	0.000004
ORF1ab/nsp14A2-B	417	G417del	GGC	---	4	4	AD.2	0.000876
ORF1ab/nsp14A2-B	417	G417V	gGc	gTc	4	4	AY.110	0.000451
ORF1ab/nsp14A2-B	417	G417G	ggC	ggT	4	4	AY.116	0.001147
ORF1ab/nsp14A2-B	417	G417del2	gGC	g--	4	4	AY.119	0.000141
ORF1ab/nsp14A2-B	417	G417G	ggC	ggT	4	4	AY.3	0.00004
ORF1ab/nsp14A2-B	417	G417G	ggC	ggT	4	4	AY.34	0.000388
ORF1ab/nsp14A2-B	417	G417del	GGC	---	4	4	AY.43	0.000018
ORF1ab/nsp14A2-B	417	G417del	GGC	---	4	4	AY.44	0.000024
ORF1ab/nsp14A2-B	417	G417G	ggC	ggT	4	4	B.1.177.72	0.013559
ORF1ab/nsp14A2-B	417	G417V	gGc	gTc	3	3	AY.102	0.00008
ORF1ab/nsp14A2-B	417	G417del2	gGC	g--	3	3	AY.103	0.000019
ORF1ab/nsp14A2-B	417	G417G	ggC	ggT	2	3	AY.23	0.000139
ORF1ab/nsp14A2-B	417	G417G	ggC	ggG	1	3	AY.23	0.00007
ORF1ab/nsp14A2-B	417	G417del	GGC	---	3	3	AY.25	0.000018
ORF1ab/nsp14A2-B	417	G417V	gGc	gTc	3	3	AY.3	0.00003
ORF1ab/nsp14A2-B	417	G417del1	Ggc	-gc	2	3	AY.39	0.000049
ORF1ab/nsp14A2-B	417	G417del1	ggC	gg-	1	3	AY.39	0.000025
ORF1ab/nsp14A2-B	417	G417G	ggC	ggT	2	3	AY.4.2	0.000043
ORF1ab/nsp14A2-B	417	G417G	ggC	ggA	1	3	AY.4.2	0.000022
ORF1ab/nsp14A2-B	417	G417G	ggC	ggT	3	3	AY.68	0.000821
ORF1ab/nsp14A2-B	417	G417G	ggC	ggT	3	3	AY.9.2	0.00011
ORF1ab/nsp14A2-B	417	G417C	Ggc	Tgc	3	3	B.1	0.000027
ORF1ab/nsp14A2-B	417	G417del2	gGC	g--	3	3	B.1	0.000027
ORF1ab/nsp14A2-B	417	G417del1	GGC	-NN	1	3	B.1	0.000009
ORF1ab/nsp14A2-B	417	G417del1	GgC	-gN	1	3	B.1	0.000009
ORF1ab/nsp14A2-B	417	G417del1	ggC	gg-	1	3	B.1	0.000009
ORF1ab/nsp14A2-B	417	G417D	gGc	gAc	3	3	B.1.1	0.000054
ORF1ab/nsp14A2-B	417	G417G	ggC	ggT	3	3	B.1.1.216	0.002671
ORF1ab/nsp14A2-B	417	G417G	ggC	ggT	3	3	B.1.1.222	0.000612
ORF1ab/nsp14A2-B	417	G417V	gGc	gTc	3	3	B.1.1.7	0.000003
ORF1ab/nsp14A2-B	417	G417G	ggC	ggT	3	3	B.1.160.28	0.008772
ORF1ab/nsp14A2-B	417	G417G	ggC	ggT	3	3	B.1.351	0.000089
ORF1ab/nsp14A2-B	417	G417G	ggC	ggT	3	3	B.1.36.18	0.001261
ORF1ab/nsp14A2-B	417	G417del	GGC	---	3	3	B.1.517	0.001281
ORF1ab/nsp14A2-B	417	G417del	GGC	---	3	3	B.1.595	0.000783
ORF1ab/nsp14A2-B	417	G417G	ggC	ggT	2	3	B.1.617.1	0.000258
ORF1ab/nsp14A2-B	417	G417G	ggC	ggG	1	3	B.1.617.1	0.000129
ORF1ab/nsp14A2-B	417	G417del2	gGC	g--	3	3	P.2	0.00056
ORF1ab/nsp14A2-B	417	G417V	gGC	gTG	1	2	A.2.4	0.003367
ORF1ab/nsp14A2-B	417	G417V	gGc	gTc	1	2	A.2.4	0.003367
ORF1ab/nsp14A2-B	417	G417E	gGC	gAA	1	2	All	0
ORF1ab/nsp14A2-B	417	G417E	gGC	gAG	1	2	All	0
ORF1ab/nsp14A2-B	417	G417del1	ggC	gg-	2	2	AY.103	0.000012
ORF1ab/nsp14A2-B	417	G417del	GGC	---	2	2	AY.118	0.000125
ORF1ab/nsp14A2-B	417	G417del	GGC	---	2	2	AY.16.1	0.00094
ORF1ab/nsp14A2-B	417	G417del1	ggC	gg-	1	2	AY.25	0.000006
ORF1ab/nsp14A2-B	417	G417del1	Ggc	-gc	1	2	AY.25	0.000006
ORF1ab/nsp14A2-B	417	G417G	ggC	ggT	2	2	AY.26	0.000057
ORF1ab/nsp14A2-B	417	G417del	GGC	---	2	2	AY.26	0.000057
ORF1ab/nsp14A2-B	417	G417del2	gGC	g--	2	2	AY.3	0.00002
ORF1ab/nsp14A2-B	417	G417S	Ggc	Agc	2	2	AY.33	0.000134
ORF1ab/nsp14A2-B	417	G417R	Ggc	Cgc	2	2	AY.4	0.000003
ORF1ab/nsp14A2-B	417	G417V	gGc	gTc	2	2	AY.4	0.000003
ORF1ab/nsp14A2-B	417	G417S	Ggc	Agc	2	2	AY.4	0.000003
ORF1ab/nsp14A2-B	417	G417del2	gGC	g--	2	2	AY.44	0.000012
ORF1ab/nsp14A2-B	417	G417V	gGc	gTc	2	2	AY.46.6	0.000144
ORF1ab/nsp14A2-B	417	G417G	ggC	ggT	2	2	AY.5	0.000041
ORF1ab/nsp14A2-B	417	G417del1	ggC	gg-	1	2	AY.5.3	0.000337
ORF1ab/nsp14A2-B	417	G417del1	Ggc	-gc	1	2	AY.5.3	0.000337
ORF1ab/nsp14A2-B	417	G417del1	GgC	-gN	1	2	AY.55	0.000917
ORF1ab/nsp14A2-B	417	G417del1	ggC	gg-	1	2	AY.55	0.000917
ORF1ab/nsp14A2-B	417	G417G	ggC	ggT	2	2	AY.75	0.000112
ORF1ab/nsp14A2-B	417	G417G	ggC	ggT	2	2	AY.75.1	0.000361
ORF1ab/nsp14A2-B	417	G417G	ggC	ggT	2	2	AY.92	0.000575
ORF1ab/nsp14A2-B	417	G417V	gGc	gTc	2	2	B	0.000256
ORF1ab/nsp14A2-B	417	G417D	gGc	gAc	2	2	B.1	0.000018
ORF1ab/nsp14A2-B	417	G417del2	gGC	g--	2	2	B.1.1	0.000036
ORF1ab/nsp14A2-B	417	G417del	GGC	---	2	2	B.1.1.174	0.006757
ORF1ab/nsp14A2-B	417	G417del	GGC	---	2	2	B.1.1.194	0.009901
ORF1ab/nsp14A2-B	417	G417del	GGC	---	2	2	B.1.1.277	0.001517
ORF1ab/nsp14A2-B	417	G417G	ggC	ggT	2	2	B.1.1.318	0.000604
ORF1ab/nsp14A2-B	417	G417del	GGC	---	2	2	B.1.1.416	0.00181
ORF1ab/nsp14A2-B	417	G417del	GGC	---	2	2	B.1.1.434	0.000697
ORF1ab/nsp14A2-B	417	G417G	ggC	ggT	2	2	B.1.1.519	0.000079
ORF1ab/nsp14A2-B	417	G417del	GGC	---	2	2	B.1.110.3	0.001437
ORF1ab/nsp14A2-B	417	G417G	ggC	ggT	2	2	B.1.160	0.000062
ORF1ab/nsp14A2-B	417	G417G	ggC	ggT	2	2	B.1.177.65	0.001331
ORF1ab/nsp14A2-B	417	G417G	ggC	ggT	2	2	B.1.221	0.000142
ORF1ab/nsp14A2-B	417	G417del2	gGC	g--	2	2	B.1.351	0.000059
ORF1ab/nsp14A2-B	417	G417del	GGC	---	2	2	B.1.36	0.000292
ORF1ab/nsp14A2-B	417	G417D	gGc	gAc	2	2	B.1.429	0.000047
ORF1ab/nsp14A2-B	417	G417V	gGc	gTc	2	2	B.1.497	0.00063
ORF1ab/nsp14A2-B	417	G417del1	ggC	gg-	2	2	B.1.526	0.000047
ORF1ab/nsp14A2-B	417	G417del2	gGC	g--	2	2	B.1.526	0.000047
ORF1ab/nsp14A2-B	417	G417del	GGC	---	2	2	B.1.568	0.002222
ORF1ab/nsp14A2-B	417	G417G	ggC	ggT	2	2	B.1.596	0.000174
ORF1ab/nsp14A2-B	417	G417V	gGc	gTc	2	2	B.1.617.2	0.000008
ORF1ab/nsp14A2-B	417	G417del1	ggC	gg-	2	2	B.1.617.2	0.000008
ORF1ab/nsp14A2-B	417	G417del	GGC	---	2	2	P.1.15	0.000465
ORF1ab/nsp14A2-B	417	G417G	ggC	ggG	1	1	A.2.4	0.003367
ORF1ab/nsp14A2-B	417	G417G	ggC	ggT	1	1	A.2.5.1	0.004808
ORF1ab/nsp14A2-B	417	G417D	gGc	gAc	1	1	A.2.5.2	0.001572
ORF1ab/nsp14A2-B	417	G417G	ggC	ggT	1	1	AD.2	0.000219
ORF1ab/nsp14A2-B	417	G417del1	ggC	gg-	1	1	AD.2	0.000219
ORF1ab/nsp14A2-B	417	G417K	GGC	AAA	1	1	All	0
ORF1ab/nsp14A2-B	417	G417L	GGC	TTG	1	1	All	0
ORF1ab/nsp14A2-B	417	G417T	GGC	ACT	1	1	All	0
ORF1ab/nsp14A2-B	417	G417N	GGc	AAc	1	1	All	0
ORF1ab/nsp14A2-B	417	G417del	GGC	---	1	1	AY.101	0.00049
ORF1ab/nsp14A2-B	417	G417G	ggC	ggT	1	1	AY.101	0.00049
ORF1ab/nsp14A2-B	417	G417G	ggC	ggT	1	1	AY.102	0.000027
ORF1ab/nsp14A2-B	417	G417G	ggC	ggT	1	1	AY.105	0.000643
ORF1ab/nsp14A2-B	417	G417G	ggC	ggT	1	1	AY.106	0.000335
ORF1ab/nsp14A2-B	417	G417del	GGC	---	1	1	AY.107	0.000466
ORF1ab/nsp14A2-B	417	G417del2	gGC	g--	1	1	AY.110	0.000113
ORF1ab/nsp14A2-B	417	G417G	ggC	ggA	1	1	AY.110	0.000113
ORF1ab/nsp14A2-B	417	G417V	gGc	gTc	1	1	AY.113	0.000142
ORF1ab/nsp14A2-B	417	G417del1	Ggc	-gc	1	1	AY.114	0.000231
ORF1ab/nsp14A2-B	417	G417G	ggC	ggT	1	1	AY.116.1	0.000311
ORF1ab/nsp14A2-B	417	G417G	ggC	ggT	1	1	AY.117	0.000085
ORF1ab/nsp14A2-B	417	G417del2	gGC	g--	1	1	AY.118	0.000063
ORF1ab/nsp14A2-B	417	G417del	GGC	---	1	1	AY.119	0.000035
ORF1ab/nsp14A2-B	417	G417G	ggC	ggT	1	1	AY.14	0.000088
ORF1ab/nsp14A2-B	417	G417del	GGC	---	1	1	AY.20	0.000039
ORF1ab/nsp14A2-B	417	G417C	Ggc	Tgc	1	1	AY.25	0.000006
ORF1ab/nsp14A2-B	417	G417R	Ggc	Cgc	1	1	AY.25	0.000006
ORF1ab/nsp14A2-B	417	G417del1	ggC	gg-	1	1	AY.26	0.000028
ORF1ab/nsp14A2-B	417	G417del2	gGC	g--	1	1	AY.26	0.000028
ORF1ab/nsp14A2-B	417	G417G	ggC	ggT	1	1	AY.27	0.000065
ORF1ab/nsp14A2-B	417	G417G	ggC	ggT	1	1	AY.29	0.000016
ORF1ab/nsp14A2-B	417	G417del	GGC	---	1	1	AY.29.1	0.000221
ORF1ab/nsp14A2-B	417	G417G	ggC	ggT	1	1	AY.29.1	0.000221
ORF1ab/nsp14A2-B	417	G417del	GGC	---	1	1	AY.3	0.00001
ORF1ab/nsp14A2-B	417	G417S	Ggc	Agc	1	1	AY.3	0.00001
ORF1ab/nsp14A2-B	417	G417E	gGC	gAG	1	1	AY.3	0.00001
ORF1ab/nsp14A2-B	417	G417del1	ggC	gg-	1	1	AY.3	0.00001
ORF1ab/nsp14A2-B	417	G417del1	Ggc	-gc	1	1	AY.3.1	0.000085
ORF1ab/nsp14A2-B	417	G417A	gGc	gCc	1	1	AY.33	0.000067
ORF1ab/nsp14A2-B	417	G417del	GGC	---	1	1	AY.34	0.000097
ORF1ab/nsp14A2-B	417	G417A	gGc	gCc	1	1	AY.34	0.000097
ORF1ab/nsp14A2-B	417	G417V	gGc	gTc	1	1	AY.34	0.000097
ORF1ab/nsp14A2-B	417	G417G	ggC	ggT	1	1	AY.39	0.000025
ORF1ab/nsp14A2-B	417	G417del	GGC	---	1	1	AY.39.1	0.00004
ORF1ab/nsp14A2-B	417	G417D	gGc	gAc	1	1	AY.4	0.000002
ORF1ab/nsp14A2-B	417	G417V	gGc	gTc	1	1	AY.42	0.00004
ORF1ab/nsp14A2-B	417	G417del2	gGC	g--	1	1	AY.42	0.00004
ORF1ab/nsp14A2-B	417	G417A	gGc	gCc	1	1	AY.42	0.00004
ORF1ab/nsp14A2-B	417	G417G	ggC	ggT	1	1	AY.42	0.00004
ORF1ab/nsp14A2-B	417	G417C	Ggc	Tgc	1	1	AY.43	0.000004
ORF1ab/nsp14A2-B	417	G417S	Ggc	Agc	1	1	AY.43	0.000004
ORF1ab/nsp14A2-B	417	G417A	gGc	gCc	1	1	AY.44	0.000006
ORF1ab/nsp14A2-B	417	G417C	Ggc	Tgc	1	1	AY.44	0.000006
ORF1ab/nsp14A2-B	417	G417C	Ggc	Tgc	1	1	AY.45	0.000122
ORF1ab/nsp14A2-B	417	G417G	ggC	ggT	1	1	AY.46	0.000104
ORF1ab/nsp14A2-B	417	G417del	GGC	---	1	1	AY.46	0.000104
ORF1ab/nsp14A2-B	417	G417A	gGc	gCc	1	1	AY.46.2	0.000635
ORF1ab/nsp14A2-B	417	G417del2	gGC	g--	1	1	AY.46.6	0.000072
ORF1ab/nsp14A2-B	417	G417del1	ggC	gg-	1	1	AY.49	0.003195
ORF1ab/nsp14A2-B	417	G417del	GGC	---	1	1	AY.5.3	0.000337
ORF1ab/nsp14A2-B	417	G417del2	gGC	g--	1	1	AY.5.4	0.000277
ORF1ab/nsp14A2-B	417	G417del1	ggC	gg-	1	1	AY.5.4	0.000277
ORF1ab/nsp14A2-B	417	G417del	GGC	---	1	1	AY.54	0.000095
ORF1ab/nsp14A2-B	417	G417G	ggC	ggT	1	1	AY.54	0.000095
ORF1ab/nsp14A2-B	417	G417G	ggC	ggT	1	1	AY.6	0.000041
ORF1ab/nsp14A2-B	417	G417G	ggC	ggT	1	1	AY.61	0.000105
ORF1ab/nsp14A2-B	417	G417V	gGc	gTc	1	1	AY.67	0.000464
ORF1ab/nsp14A2-B	417	G417del1	ggC	gg-	1	1	AY.68	0.000274
ORF1ab/nsp14A2-B	417	G417G	ggC	ggT	1	1	AY.69	0.000187
ORF1ab/nsp14A2-B	417	G417G	ggC	ggT	1	1	AY.7	0.000196
ORF1ab/nsp14A2-B	417	G417D	gGc	gAc	1	1	AY.7	0.000196
ORF1ab/nsp14A2-B	417	G417G	ggC	ggT	1	1	AY.70	0.000209
ORF1ab/nsp14A2-B	417	G417del	GGC	---	1	1	AY.75	0.000056
ORF1ab/nsp14A2-B	417	G417C	Ggc	Tgc	1	1	AY.75	0.000056
ORF1ab/nsp14A2-B	417	G417V	gGc	gTc	1	1	AY.84	0.000437
ORF1ab/nsp14A2-B	417	G417del	GGC	---	1	1	AY.9	0.000068
ORF1ab/nsp14A2-B	417	G417V	gGc	gTc	1	1	AY.9.2	0.000037
ORF1ab/nsp14A2-B	417	G417A	gGc	gCc	1	1	AY.91	0.00073
ORF1ab/nsp14A2-B	417	G417del1	ggC	gg-	1	1	AY.92	0.000287
ORF1ab/nsp14A2-B	417	G417V	gGc	gTc	1	1	AY.99	0.001049
ORF1ab/nsp14A2-B	417	G417G	ggC	ggT	1	1	AY.99	0.001049
ORF1ab/nsp14A2-B	417	G417G	ggC	ggA	1	1	B	0.000128
ORF1ab/nsp14A2-B	417	G417V	gGc	gTc	1	1	B.1	0.000009
ORF1ab/nsp14A2-B	417	G417del1	ggC	gg-	1	1	B.1.1	0.000018
ORF1ab/nsp14A2-B	417	G417G	ggC	ggT	1	1	B.1.1	0.000018
ORF1ab/nsp14A2-B	417	G417G	ggC	ggT	1	1	B.1.1.176	0.000439
ORF1ab/nsp14A2-B	417	G417del	GGC	---	1	1	B.1.1.192	0.002309
ORF1ab/nsp14A2-B	417	G417G	ggC	ggT	1	1	B.1.1.200	0.007463
ORF1ab/nsp14A2-B	417	G417del	GGC	---	1	1	B.1.1.207	0.001182
ORF1ab/nsp14A2-B	417	G417G	ggC	ggT	1	1	B.1.1.214	0.000055
ORF1ab/nsp14A2-B	417	G417del	GGC	---	1	1	B.1.1.218	0.007692
ORF1ab/nsp14A2-B	417	G417del	GGC	---	1	1	B.1.1.232	0.001815
ORF1ab/nsp14A2-B	417	G417del	GGC	---	1	1	B.1.1.241	0.00207
ORF1ab/nsp14A2-B	417	G417L	GGC	TTG	1	1	B.1.1.254	0.011236
ORF1ab/nsp14A2-B	417	G417D	gGc	gAc	1	1	B.1.1.274	0.005051
ORF1ab/nsp14A2-B	417	G417del1	ggC	gg-	1	1	B.1.1.277	0.000759
ORF1ab/nsp14A2-B	417	G417G	ggC	ggT	1	1	B.1.1.28	0.000311
ORF1ab/nsp14A2-B	417	G417V	gGc	gTc	1	1	B.1.1.306	0.000438
ORF1ab/nsp14A2-B	417	G417del	GGC	---	1	1	B.1.1.306	0.000438
ORF1ab/nsp14A2-B	417	G417del	GGC	---	1	1	B.1.1.311	0.000358
ORF1ab/nsp14A2-B	417	G417del	GGC	---	1	1	B.1.1.317	0.000412
ORF1ab/nsp14A2-B	417	G417D	gGc	gAc	1	1	B.1.1.317	0.000412
ORF1ab/nsp14A2-B	417	G417G	ggC	ggT	1	1	B.1.1.331	0.011628
ORF1ab/nsp14A2-B	417	G417del2	gGC	g--	1	1	B.1.1.348	0.000796
ORF1ab/nsp14A2-B	417	G417G	ggC	ggT	1	1	B.1.1.348	0.000796
ORF1ab/nsp14A2-B	417	G417V	gGc	gTc	1	1	B.1.1.409	0.002833
ORF1ab/nsp14A2-B	417	G417D	gGc	gAc	1	1	B.1.1.428	0.009434
ORF1ab/nsp14A2-B	417	G417del2	gGC	g--	1	1	B.1.1.432	0.001266
ORF1ab/nsp14A2-B	417	G417del	GGC	---	1	1	B.1.1.44	0.00241
ORF1ab/nsp14A2-B	417	G417del	GGC	---	1	1	B.1.1.448	0.002033
ORF1ab/nsp14A2-B	417	G417V	gGc	gTc	1	1	B.1.1.46	0.004367
ORF1ab/nsp14A2-B	417	G417del1	GGC	-NN	1	1	B.1.1.51	0.001718
ORF1ab/nsp14A2-B	417	G417del	GGC	---	1	1	B.1.1.517	0.006803
ORF1ab/nsp14A2-B	417	G417del1	ggC	gg-	1	1	B.1.1.519	0.00004
ORF1ab/nsp14A2-B	417	G417D	gGc	gAc	1	1	B.1.1.519	0.00004
ORF1ab/nsp14A2-B	417	G417del	GGC	---	1	1	B.1.1.519	0.00004
ORF1ab/nsp14A2-B	417	G417K	GGC	AAA	1	1	B.1.1.7	0.000001
ORF1ab/nsp14A2-B	417	G417N	GGc	AAc	1	1	B.1.1.7	0.000001
ORF1ab/nsp14A2-B	417	G417E	gGC	gAA	1	1	B.1.1.7	0.000001
ORF1ab/nsp14A2-B	417	G417A	gGc	gCc	1	1	B.1.1.7	0.000001
ORF1ab/nsp14A2-B	417	G417R	GgC	AgA	1	1	B.1.1.7	0.000001
ORF1ab/nsp14A2-B	417	G417G	ggC	ggT	1	1	B.1.110.3	0.000718
ORF1ab/nsp14A2-B	417	G417del	GGC	---	1	1	B.1.160	0.000031
ORF1ab/nsp14A2-B	417	G417D	gGc	gAc	1	1	B.1.177	0.000013
ORF1ab/nsp14A2-B	417	G417V	gGc	gTc	1	1	B.1.177	0.000013
ORF1ab/nsp14A2-B	417	G417del	GGC	---	1	1	B.1.177.16	0.000664
ORF1ab/nsp14A2-B	417	G417G	ggC	ggT	1	1	B.1.177.16	0.000664
ORF1ab/nsp14A2-B	417	G417G	ggC	ggT	1	1	B.1.177.21	0.000076
ORF1ab/nsp14A2-B	417	G417D	gGc	gAc	1	1	B.1.177.4	0.000211
ORF1ab/nsp14A2-B	417	G417S	Ggc	Agc	1	1	B.1.177.4	0.000211
ORF1ab/nsp14A2-B	417	G417del	GGC	---	1	1	B.1.177.50	0.004695
ORF1ab/nsp14A2-B	417	G417del	GGC	---	1	1	B.1.177.62	0.001192
ORF1ab/nsp14A2-B	417	G417del	GGC	---	1	1	B.1.177.68	0.015152
ORF1ab/nsp14A2-B	417	G417del	GGC	---	1	1	B.1.177.75	0.001041
ORF1ab/nsp14A2-B	417	G417V	gGc	gTc	1	1	B.1.177.81	0.000189
ORF1ab/nsp14A2-B	417	G417del	GGC	---	1	1	B.1.177.87	0.000728
ORF1ab/nsp14A2-B	417	G417R	Ggc	Cgc	1	1	B.1.2	0.000009
ORF1ab/nsp14A2-B	417	G417S	Ggc	Agc	1	1	B.1.2	0.000009
ORF1ab/nsp14A2-B	417	G417C	Ggc	Tgc	1	1	B.1.2	0.000009
ORF1ab/nsp14A2-B	417	G417del1	Ggc	-gc	1	1	B.1.206	0.000816
ORF1ab/nsp14A2-B	417	G417del	GGC	---	1	1	B.1.234	0.000132
ORF1ab/nsp14A2-B	417	G417G	ggC	ggT	1	1	B.1.237	0.004975
ORF1ab/nsp14A2-B	417	G417G	ggC	ggT	1	1	B.1.240	0.000216
ORF1ab/nsp14A2-B	417	G417del2	gGC	g--	1	1	B.1.243	0.00007
ORF1ab/nsp14A2-B	417	G417del1	ggC	gg-	1	1	B.1.243	0.00007
ORF1ab/nsp14A2-B	417	G417R	Ggc	Cgc	1	1	B.1.243	0.00007
ORF1ab/nsp14A2-B	417	G417D	gGc	gAc	1	1	B.1.258	0.000067
ORF1ab/nsp14A2-B	417	G417del	GGC	---	1	1	B.1.258	0.000067
ORF1ab/nsp14A2-B	417	G417del	GGC	---	1	1	B.1.258.3	0.001675
ORF1ab/nsp14A2-B	417	G417del1	ggC	gg-	1	1	B.1.265	0.001271
ORF1ab/nsp14A2-B	417	G417del	GGC	---	1	1	B.1.284	0.013158
ORF1ab/nsp14A2-B	417	G417G	ggC	ggT	1	1	B.1.311	0.000275
ORF1ab/nsp14A2-B	417	G417del	GGC	---	1	1	B.1.349	0.000715
ORF1ab/nsp14A2-B	417	G417del1	GgC	-gN	1	1	B.1.349	0.000715
ORF1ab/nsp14A2-B	417	G417del1	ggC	gg-	1	1	B.1.351	0.00003
ORF1ab/nsp14A2-B	417	G417D	gGc	gAc	1	1	B.1.351	0.00003
ORF1ab/nsp14A2-B	417	G417G	ggC	ggT	1	1	B.1.351.5	0.0006
ORF1ab/nsp14A2-B	417	G417T	GGC	ACT	1	1	B.1.36	0.000146
ORF1ab/nsp14A2-B	417	G417G	ggC	ggT	1	1	B.1.36	0.000146
ORF1ab/nsp14A2-B	417	G417del	GGC	---	1	1	B.1.36.35	0.002604
ORF1ab/nsp14A2-B	417	G417V	gGc	gTc	1	1	B.1.369	0.000285
ORF1ab/nsp14A2-B	417	G417G	ggC	ggT	1	1	B.1.391	0.001127
ORF1ab/nsp14A2-B	417	G417G	ggC	ggT	1	1	B.1.396	0.000706
ORF1ab/nsp14A2-B	417	G417del	GGC	---	1	1	B.1.398	0.002976
ORF1ab/nsp14A2-B	417	G417G	ggC	ggT	1	1	B.1.400	0.000429
ORF1ab/nsp14A2-B	417	G417del	GGC	---	1	1	B.1.409	0.000781
ORF1ab/nsp14A2-B	417	G417D	gGc	gAc	1	1	B.1.411	0.003704
ORF1ab/nsp14A2-B	417	G417del	GGC	---	1	1	B.1.416.1	0.001563
ORF1ab/nsp14A2-B	417	G417del	GGC	---	1	1	B.1.427	0.00005
ORF1ab/nsp14A2-B	417	G417D	gGc	gAc	1	1	B.1.427	0.00005
ORF1ab/nsp14A2-B	417	G417V	gGc	gTc	1	1	B.1.429	0.000024
ORF1ab/nsp14A2-B	417	G417del	GGC	---	1	1	B.1.433	0.003195
ORF1ab/nsp14A2-B	417	G417G	ggC	ggT	1	1	B.1.441	0.009615
ORF1ab/nsp14A2-B	417	G417D	gGc	gAc	1	1	B.1.442	0.035714
ORF1ab/nsp14A2-B	417	G417G	ggC	ggT	1	1	B.1.456	0.003268
ORF1ab/nsp14A2-B	417	G417A	gGc	gCc	1	1	B.1.497	0.000315
ORF1ab/nsp14A2-B	417	G417G	ggC	ggT	1	1	B.1.497	0.000315
ORF1ab/nsp14A2-B	417	G417del1	ggC	gg-	1	1	B.1.517	0.000427
ORF1ab/nsp14A2-B	417	G417del2	gGC	g--	1	1	B.1.517	0.000427
ORF1ab/nsp14A2-B	417	G417del	GGC	---	1	1	B.1.525	0.000113
ORF1ab/nsp14A2-B	417	G417D	gGc	gAc	1	1	B.1.526	0.000024
ORF1ab/nsp14A2-B	417	G417del	GGC	---	1	1	B.1.551	0.00129
ORF1ab/nsp14A2-B	417	G417G	ggC	ggT	1	1	B.1.561	0.000397
ORF1ab/nsp14A2-B	417	G417del1	ggC	gg-	1	1	B.1.568	0.001111
ORF1ab/nsp14A2-B	417	G417del	GGC	---	1	1	B.1.575	0.000303
ORF1ab/nsp14A2-B	417	G417del2	gGC	g--	1	1	B.1.575	0.000303
ORF1ab/nsp14A2-B	417	G417del	GGC	---	1	1	B.1.577	0.000687
ORF1ab/nsp14A2-B	417	G417del	GGC	---	1	1	B.1.582	0.000491
ORF1ab/nsp14A2-B	417	G417G	ggC	ggT	1	1	B.1.590	0.004545
ORF1ab/nsp14A2-B	417	G417del1	ggC	gg-	1	1	B.1.596	0.000087
ORF1ab/nsp14A2-B	417	G417C	Ggc	Tgc	1	1	B.1.596	0.000087
ORF1ab/nsp14A2-B	417	G417del2	gGC	g--	1	1	B.1.596	0.000087
ORF1ab/nsp14A2-B	417	G417V	gGc	gTc	1	1	B.1.609	0.000479
ORF1ab/nsp14A2-B	417	G417G	ggC	ggA	1	1	B.1.612	0.002653
ORF1ab/nsp14A2-B	417	G417C	Ggc	Tgc	1	1	B.1.617.1	0.000129
ORF1ab/nsp14A2-B	417	G417A	gGC	gCT	1	1	B.1.617.1	0.000129
ORF1ab/nsp14A2-B	417	G417del2	gGC	g--	1	1	B.1.617.2	0.000004
ORF1ab/nsp14A2-B	417	G417del	GGC	---	1	1	B.1.623	0.000536
ORF1ab/nsp14A2-B	417	G417C	Ggc	Tgc	1	1	B.1.630	0.005236
ORF1ab/nsp14A2-B	417	G417del	GGC	---	1	1	B.1.9.5	0.005682
ORF1ab/nsp14A2-B	417	G417V	gGc	gTc	1	1	B.1.93	0.000934
ORF1ab/nsp14A2-B	417	G417del	GGC	---	1	1	B.55	0.00295
ORF1ab/nsp14A2-B	417	G417del	GGC	---	1	1	B.58	0.010204
ORF1ab/nsp14A2-B	417	G417S	Ggc	Agc	1	1	B.6	0.00091
ORF1ab/nsp14A2-B	417	G417G	ggC	ggT	1	1	C.26	0.007353
ORF1ab/nsp14A2-B	417	G417G	ggC	ggT	1	1	C.36.3	0.000567
ORF1ab/nsp14A2-B	417	G417del	GGC	---	1	1	C.5	0.090909
ORF1ab/nsp14A2-B	417	G417V	gGc	gTc	1	1	D.3	0.005917
ORF1ab/nsp14A2-B	417	G417del	GGC	---	1	1	P.1	0.000016
ORF1ab/nsp14A2-B	417	G417del2	gGC	g--	1	1	P.1	0.000016
ORF1ab/nsp14A2-B	417	G417del1	ggC	gg-	1	1	P.1.10	0.000269
ORF1ab/nsp14A2-B	417	G417G	ggC	ggT	1	1	P.1.2	0.001156
ORF1ab/nsp14A2-B	417	G417D	gGc	gAc	1	1	P.2	0.000187
ORF1ab/nsp14A2-B	417	G417del	GGC	---	1	1	P.2	0.000187
ORF1ab/nsp14A2-B	417	G417del	GGC	---	1	1	Q.1	0.000126
ORF1ab/nsp14A2-B	417	G417del	GGC	---	1	1	Q.3	0.000145
ORF1ab/nsp14A2-B	417	G417G	ggC	ggT	1	1	R.1	0.00009
ORF1ab/nsp14A2-B	417	G417del	GGC	---	1	1	R.1	0.00009
ORF1ab/nsp14A2-B	417	G417D	gGc	gAc	1	1	U.3	0.003861
ORF1ab/nsp14A2-B	417	G417del	GGC	---	1	1	W.1	0.008696

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.