CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp14A2-B : CodonNum = 405

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp14A2-B405V405VV6330VsyngtGgtT8486670.78655719252-19254
ORF1ab/nsp14A2-B405V405VV6330VsyngtGgtA8481670.19693419252-19254
ORF1ab/nsp14A2-B405V405VV6330VsyngtGgtC848140.016509419252-19254
ORF1ab/nsp14A2-B405V405LV6330LnonsynGtgTtg4374280.97940519252-19254
ORF1ab/nsp14A2-B405V405LV6330LnonsynGtgCtg43790.02059519252-19254
ORF1ab/nsp14A2-B405V405delV6330deldelGTG---4545119252-19254
ORF1ab/nsp14A2-B405V405AV6330AnonsyngTggCg2525119252-19254
ORF1ab/nsp14A2-B405V405MV6330MnonsynGtgAtg1919119252-19254
ORF1ab/nsp14A2-B405V405del1V6330del1delgTgg-g1050.519252-19254
ORF1ab/nsp14A2-B405V405del1V6330del1delgtGgt-1040.419252-19254
ORF1ab/nsp14A2-B405V405del1V6330del1delGtg-tg1010.119252-19254
ORF1ab/nsp14A2-B405V405GV6330GnonsyngTggGg55119252-19254
ORF1ab/nsp14A2-B405V405SV6330SnonsynGTGAGT11119252-19254
ORF1ab/nsp14A2-B405V405del2V6330del2delgTGg--11119252-19254

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp14A2-B405V405VgtGgtT667848All0.000128
ORF1ab/nsp14A2-B405V405VgtGgtA167848All0.000032
ORF1ab/nsp14A2-B405V405VgtGgtC14848All0.000003
ORF1ab/nsp14A2-B405V405LGtgTtg428437All0.000082
ORF1ab/nsp14A2-B405V405LGtgCtg9437All0.000002
ORF1ab/nsp14A2-B405V405VgtGgtT278278B.1.1.2530.696742
ORF1ab/nsp14A2-B405V405LGtgTtg131131D.20.00983
ORF1ab/nsp14A2-B405V405LGtgTtg9899B.1.1.70.000088
ORF1ab/nsp14A2-B405V405LGtgCtg199B.1.1.70.000001
ORF1ab/nsp14A2-B405V405VgtGgtA6386AY.40.000098
ORF1ab/nsp14A2-B405V405VgtGgtT1886AY.40.000028
ORF1ab/nsp14A2-B405V405VgtGgtC586AY.40.000008
ORF1ab/nsp14A2-B405V405VgtGgtT3558B.1.1.70.000031
ORF1ab/nsp14A2-B405V405VgtGgtA2358B.1.1.70.000021
ORF1ab/nsp14A2-B405V405VgtGgtT3752B.1.617.20.000139
ORF1ab/nsp14A2-B405V405VgtGgtA1452B.1.617.20.000053
ORF1ab/nsp14A2-B405V405VgtGgtC152B.1.617.20.000004
ORF1ab/nsp14A2-B405V405delGTG---4545All0.000009
ORF1ab/nsp14A2-B405V405VgtGgtT3942AY.440.000237
ORF1ab/nsp14A2-B405V405VgtGgtA342AY.440.000018
ORF1ab/nsp14A2-B405V405VgtGgtT2034AY.430.000089
ORF1ab/nsp14A2-B405V405VgtGgtA1434AY.430.000062
ORF1ab/nsp14A2-B405V405VgtGgtT2433AY.250.000144
ORF1ab/nsp14A2-B405V405VgtGgtA933AY.250.000054
ORF1ab/nsp14A2-B405V405LGtgTtg2828B.1.2580.001863
ORF1ab/nsp14A2-B405V405AgTggCg2525All0.000005
ORF1ab/nsp14A2-B405V405LGtgTtg2324B.1.20.000203
ORF1ab/nsp14A2-B405V405LGtgCtg124B.1.20.000009
ORF1ab/nsp14A2-B405V405delGTG---2323B.1.1.70.000021
ORF1ab/nsp14A2-B405V405LGtgTtg2222AY.430.000097
ORF1ab/nsp14A2-B405V405VgtGgtT2020L.41
ORF1ab/nsp14A2-B405V405MGtgAtg1919All0.000004
ORF1ab/nsp14A2-B405V405LGtgTtg1719AY.40.000026
ORF1ab/nsp14A2-B405V405LGtgCtg219AY.40.000003
ORF1ab/nsp14A2-B405V405LGtgTtg1818B.1.1600.000561
ORF1ab/nsp14A2-B405V405VgtGgtT1617AY.1030.000099
ORF1ab/nsp14A2-B405V405VgtGgtA117AY.1030.000006
ORF1ab/nsp14A2-B405V405VgtGgtT1011B.1.1770.000132
ORF1ab/nsp14A2-B405V405VgtGgtA111B.1.1770.000013
ORF1ab/nsp14A2-B405V405del1gTgg-g510All0.000001
ORF1ab/nsp14A2-B405V405del1gtGgt-410All0.000001
ORF1ab/nsp14A2-B405V405del1Gtg-tg110All0
ORF1ab/nsp14A2-B405V405VgtGgtA59AY.50.000103
ORF1ab/nsp14A2-B405V405VgtGgtT49AY.50.000083
ORF1ab/nsp14A2-B405V405VgtGgtT99B.1.4040.011719
ORF1ab/nsp14A2-B405V405LGtgTtg99B.1.617.20.000034
ORF1ab/nsp14A2-B405V405VgtGgtT58B.10.000046
ORF1ab/nsp14A2-B405V405VgtGgtA28B.10.000018
ORF1ab/nsp14A2-B405V405VgtGgtC18B.10.000009
ORF1ab/nsp14A2-B405V405VgtGgtT88B.1.10.000145
ORF1ab/nsp14A2-B405V405MGtgAtg88B.1.1.70.000007
ORF1ab/nsp14A2-B405V405VgtGgtT68P.10.000095
ORF1ab/nsp14A2-B405V405VgtGgtA28P.10.000032
ORF1ab/nsp14A2-B405V405VgtGgtT77B.1.2430.000487
ORF1ab/nsp14A2-B405V405LGtgTtg66AY.1030.000037
ORF1ab/nsp14A2-B405V405LGtgTtg66AY.1180.000376
ORF1ab/nsp14A2-B405V405VgtGgtT66AY.330.000401
ORF1ab/nsp14A2-B405V405VgtGgtT56AY.470.000156
ORF1ab/nsp14A2-B405V405VgtGgtA16AY.470.000031
ORF1ab/nsp14A2-B405V405VgtGgtA46B.1.5260.000094
ORF1ab/nsp14A2-B405V405VgtGgtC16B.1.5260.000024
ORF1ab/nsp14A2-B405V405VgtGgtT16B.1.5260.000024
ORF1ab/nsp14A2-B405V405GgTggGg55All0.000001
ORF1ab/nsp14A2-B405V405LGtgTtg55AY.30.00005
ORF1ab/nsp14A2-B405V405VgtGgtT55AY.46.60.000361
ORF1ab/nsp14A2-B405V405LGtgTtg55B.1.1770.000066
ORF1ab/nsp14A2-B405V405VgtGgtC35B.1.20.000026
ORF1ab/nsp14A2-B405V405VgtGgtT25B.1.20.000018
ORF1ab/nsp14A2-B405V405VgtGgtT55B.1.351.30.004382
ORF1ab/nsp14A2-B405V405VgtGgtA45B.1.360.000584
ORF1ab/nsp14A2-B405V405VgtGgtT15B.1.360.000146
ORF1ab/nsp14A2-B405V405VgtGgtT55P.1.140.000239
ORF1ab/nsp14A2-B405V405VgtGgtT44AY.1020.000106
ORF1ab/nsp14A2-B405V405AgTggCg44AY.40.000006
ORF1ab/nsp14A2-B405V405LGtgTtg44AY.50.000083
ORF1ab/nsp14A2-B405V405VgtGgtT44AY.740.000463
ORF1ab/nsp14A2-B405V405LGtgTtg44B.1.1.5190.000159
ORF1ab/nsp14A2-B405V405VgtGgtT44B.1.3200.004981
ORF1ab/nsp14A2-B405V405VgtGgtA33A.20.001985
ORF1ab/nsp14A2-B405V405VgtGgtT33AY.1210.000406
ORF1ab/nsp14A2-B405V405delGTG---33AY.430.000013
ORF1ab/nsp14A2-B405V405LGtgTtg23AY.440.000012
ORF1ab/nsp14A2-B405V405LGtgCtg13AY.440.000006
ORF1ab/nsp14A2-B405V405VgtGgtT33AY.700.000626
ORF1ab/nsp14A2-B405V405VgtGgtT33AY.840.001312
ORF1ab/nsp14A2-B405V405VgtGgtT33AY.99.20.000276
ORF1ab/nsp14A2-B405V405LGtgTtg33B.10.000027
ORF1ab/nsp14A2-B405V405AgTggCg33B.1.1.70.000003
ORF1ab/nsp14A2-B405V405VgtGgtT33B.1.1870.1
ORF1ab/nsp14A2-B405V405delGTG---33B.1.20.000026
ORF1ab/nsp14A2-B405V405LGtgTtg23B.1.2210.000142
ORF1ab/nsp14A2-B405V405LGtgCtg13B.1.2210.000071
ORF1ab/nsp14A2-B405V405LGtgTtg33B.1.4290.000071
ORF1ab/nsp14A2-B405V405VgtGgtT33B.1.5250.000339
ORF1ab/nsp14A2-B405V405MGtgAtg33B.1.5640.001278
ORF1ab/nsp14A2-B405V405AgTggCg220.111111
ORF1ab/nsp14A2-B405V405GgTggGg220.111111
ORF1ab/nsp14A2-B405V405MGtgAtg22AE.80.000978
ORF1ab/nsp14A2-B405V405VgtGgtT22AY.1000.000092
ORF1ab/nsp14A2-B405V405VgtGgtT22AY.1040.003968
ORF1ab/nsp14A2-B405V405VgtGgtA22AY.1140.000462
ORF1ab/nsp14A2-B405V405VgtGgtT22AY.1180.000125
ORF1ab/nsp14A2-B405V405VgtGgtT22AY.1190.000071
ORF1ab/nsp14A2-B405V405VgtGgtA12AY.1200.000037
ORF1ab/nsp14A2-B405V405VgtGgtT12AY.1200.000037
ORF1ab/nsp14A2-B405V405VgtGgtT12AY.200.000039
ORF1ab/nsp14A2-B405V405VgtGgtA12AY.200.000039
ORF1ab/nsp14A2-B405V405LGtgTtg22AY.250.000012
ORF1ab/nsp14A2-B405V405VgtGgtT22AY.260.000057
ORF1ab/nsp14A2-B405V405MGtgAtg22AY.30.00002
ORF1ab/nsp14A2-B405V405MGtgAtg22AY.330.000134
ORF1ab/nsp14A2-B405V405VgtGgtT22AY.340.000194
ORF1ab/nsp14A2-B405V405VgtGgtT22AY.390.000049
ORF1ab/nsp14A2-B405V405LGtgTtg22AY.390.000049
ORF1ab/nsp14A2-B405V405del1gTgg-g22AY.40.000003
ORF1ab/nsp14A2-B405V405AgTggCg22AY.420.00008
ORF1ab/nsp14A2-B405V405VgtGgtT12AY.420.00004
ORF1ab/nsp14A2-B405V405VgtGgtA12AY.420.00004
ORF1ab/nsp14A2-B405V405AgTggCg22AY.430.000009
ORF1ab/nsp14A2-B405V405VgtGgtA12AY.460.000104
ORF1ab/nsp14A2-B405V405VgtGgtT12AY.460.000104
ORF1ab/nsp14A2-B405V405VgtGgtT22AY.75.10.000361
ORF1ab/nsp14A2-B405V405VgtGgtT22AY.880.001768
ORF1ab/nsp14A2-B405V405VgtGgtT22AY.890.009804
ORF1ab/nsp14A2-B405V405VgtGgtT22AY.90.000135
ORF1ab/nsp14A2-B405V405VgtGgtT22AY.9.10.000167
ORF1ab/nsp14A2-B405V405VgtGgtT22B.1.1.3290.007692
ORF1ab/nsp14A2-B405V405VgtGgtT22B.1.1.5190.000079
ORF1ab/nsp14A2-B405V405delGTG---22B.1.1770.000026
ORF1ab/nsp14A2-B405V405VgtGgtT12B.1.177.540.000606
ORF1ab/nsp14A2-B405V405VgtGgtC12B.1.177.540.000606
ORF1ab/nsp14A2-B405V405LGtgTtg22B.1.2630.095238
ORF1ab/nsp14A2-B405V405VgtGgtT22B.1.3510.000059
ORF1ab/nsp14A2-B405V405AgTggCg22B.1.3510.000059
ORF1ab/nsp14A2-B405V405VgtGgtA22B.1.4260.002018
ORF1ab/nsp14A2-B405V405VgtGgtT22B.1.5960.000174
ORF1ab/nsp14A2-B405V405LGtgTtg22B.1.5960.000174
ORF1ab/nsp14A2-B405V405LGtgTtg22B.1.5970.009259
ORF1ab/nsp14A2-B405V405LGtgTtg22B.290.007018
ORF1ab/nsp14A2-B405V405LGtgTtg22B.4.50.02381
ORF1ab/nsp14A2-B405V405AgTggCg22N.60.014184
ORF1ab/nsp14A2-B405V405VgtGgtT22Q.10.000253
ORF1ab/nsp14A2-B405V405VgtGgtT22R.10.00018
ORF1ab/nsp14A2-B405V405VgtGgtA11A.23.10.000704
ORF1ab/nsp14A2-B405V405LGtgTtg11A.23.10.000704
ORF1ab/nsp14A2-B405V405del2gTGg--11All0
ORF1ab/nsp14A2-B405V405SGTGAGT11All0
ORF1ab/nsp14A2-B405V405LGtgTtg11AY.100.00053
ORF1ab/nsp14A2-B405V405VgtGgtA11AY.1010.00049
ORF1ab/nsp14A2-B405V405LGtgTtg11AY.1020.000027
ORF1ab/nsp14A2-B405V405VgtGgtT11AY.1060.000335
ORF1ab/nsp14A2-B405V405VgtGgtT11AY.120.000316
ORF1ab/nsp14A2-B405V405del1gTgg-g11AY.1200.000037
ORF1ab/nsp14A2-B405V405VgtGgtT11AY.210.001898
ORF1ab/nsp14A2-B405V405VgtGgtA11AY.230.00007
ORF1ab/nsp14A2-B405V405VgtGgtT11AY.290.000016
ORF1ab/nsp14A2-B405V405del2gTGg--11AY.29.10.000221
ORF1ab/nsp14A2-B405V405LGtgTtg11AY.330.000067
ORF1ab/nsp14A2-B405V405VgtGgtA11AY.360.000148
ORF1ab/nsp14A2-B405V405LGtgTtg11AY.39.10.00004
ORF1ab/nsp14A2-B405V405delGTG---11AY.40.000002
ORF1ab/nsp14A2-B405V405del1gTgg-g11AY.430.000004
ORF1ab/nsp14A2-B405V405del1gtGgt-11AY.440.000006
ORF1ab/nsp14A2-B405V405AgTggCg11AY.440.000006
ORF1ab/nsp14A2-B405V405VgtGgtT11AY.450.000122
ORF1ab/nsp14A2-B405V405LGtgTtg11AY.46.30.000934
ORF1ab/nsp14A2-B405V405VgtGgtT11AY.520.000814
ORF1ab/nsp14A2-B405V405LGtgTtg11AY.530.000288
ORF1ab/nsp14A2-B405V405VgtGgtT11AY.530.000288
ORF1ab/nsp14A2-B405V405VgtGgtT11AY.540.000095
ORF1ab/nsp14A2-B405V405VgtGgtT11AY.550.000917
ORF1ab/nsp14A2-B405V405LGtgTtg11AY.590.00053
ORF1ab/nsp14A2-B405V405LGtgTtg11AY.60.000041
ORF1ab/nsp14A2-B405V405VgtGgtA11AY.60.000041
ORF1ab/nsp14A2-B405V405VgtGgtT11AY.610.000105
ORF1ab/nsp14A2-B405V405VgtGgtT11AY.7.10.000113
ORF1ab/nsp14A2-B405V405VgtGgtA11AY.710.000475
ORF1ab/nsp14A2-B405V405delGTG---11AY.720.001361
ORF1ab/nsp14A2-B405V405LGtgTtg11AY.750.000056
ORF1ab/nsp14A2-B405V405VgtGgtT11AY.860.00083
ORF1ab/nsp14A2-B405V405delGTG---11AY.90.000068
ORF1ab/nsp14A2-B405V405VgtGgtT11AY.950.000761
ORF1ab/nsp14A2-B405V405VgtGgtC11AY.980.000079
ORF1ab/nsp14A2-B405V405AgTggCg11AY.99.20.000092
ORF1ab/nsp14A2-B405V405delGTG---11B.10.000009
ORF1ab/nsp14A2-B405V405delGTG---11B.1.10.000018
ORF1ab/nsp14A2-B405V405VgtGgtT11B.1.1.10.000327
ORF1ab/nsp14A2-B405V405LGtgCtg11B.1.1.10.000327
ORF1ab/nsp14A2-B405V405VgtGgtT11B.1.1.100.001115
ORF1ab/nsp14A2-B405V405MGtgAtg11B.1.1.1270.0625
ORF1ab/nsp14A2-B405V405LGtgCtg11B.1.1.2140.000055
ORF1ab/nsp14A2-B405V405VgtGgtT11B.1.1.2140.000055
ORF1ab/nsp14A2-B405V405AgTggCg11B.1.1.250.000569
ORF1ab/nsp14A2-B405V405delGTG---11B.1.1.3060.000438
ORF1ab/nsp14A2-B405V405delGTG---11B.1.1.3110.000358
ORF1ab/nsp14A2-B405V405VgtGgtT11B.1.1.3150.008475
ORF1ab/nsp14A2-B405V405LGtgTtg11B.1.1.3690.000446
ORF1ab/nsp14A2-B405V405VgtGgtT11B.1.1.3720.000689
ORF1ab/nsp14A2-B405V405VgtGgtA11B.1.1.4340.000349
ORF1ab/nsp14A2-B405V405del1gtGgt-11B.1.1.70.000001
ORF1ab/nsp14A2-B405V405GgTggGg11B.1.1.70.000001
ORF1ab/nsp14A2-B405V405VgtGgtT11B.1.1600.000031
ORF1ab/nsp14A2-B405V405LGtgTtg11B.1.160.160.000929
ORF1ab/nsp14A2-B405V405MGtgAtg11B.1.1770.000013
ORF1ab/nsp14A2-B405V405AgTggCg11B.1.1770.000013
ORF1ab/nsp14A2-B405V405del1Gtg-tg11B.1.177.150.000631
ORF1ab/nsp14A2-B405V405LGtgTtg11B.1.177.160.000664
ORF1ab/nsp14A2-B405V405delGTG---11B.1.177.160.000664
ORF1ab/nsp14A2-B405V405VgtGgtT11B.1.177.230.003236
ORF1ab/nsp14A2-B405V405delGTG---11B.1.177.510.004566
ORF1ab/nsp14A2-B405V405AgTggCg11B.1.177.730.000566
ORF1ab/nsp14A2-B405V405del1gtGgt-11B.1.177.870.000728
ORF1ab/nsp14A2-B405V405AgTggCg11B.1.20.000009
ORF1ab/nsp14A2-B405V405del1gtGgt-11B.1.20.000009
ORF1ab/nsp14A2-B405V405delGTG---11B.1.2210.000071
ORF1ab/nsp14A2-B405V405VgtGgtT11B.1.2350.002519
ORF1ab/nsp14A2-B405V405LGtgTtg11B.1.2430.00007
ORF1ab/nsp14A2-B405V405VgtGgtA11B.1.2580.000067
ORF1ab/nsp14A2-B405V405LGtgTtg11B.1.258.170.000104
ORF1ab/nsp14A2-B405V405VgtGgtT11B.1.258.170.000104
ORF1ab/nsp14A2-B405V405delGTG---11B.1.258.30.001675
ORF1ab/nsp14A2-B405V405LGtgTtg11B.1.3200.001245
ORF1ab/nsp14A2-B405V405LGtgCtg11B.1.3320.003497
ORF1ab/nsp14A2-B405V405delGTG---11B.1.36.170.000494
ORF1ab/nsp14A2-B405V405LGtgTtg11B.1.3690.000285
ORF1ab/nsp14A2-B405V405VgtGgtT11B.1.3910.001127
ORF1ab/nsp14A2-B405V405VgtGgtA11B.1.4000.000429
ORF1ab/nsp14A2-B405V405LGtgTtg11B.1.4340.052632
ORF1ab/nsp14A2-B405V405LGtgTtg11B.1.4700.001404
ORF1ab/nsp14A2-B405V405VgtGgtT11B.1.5240.001406
ORF1ab/nsp14A2-B405V405LGtgTtg11B.1.5260.000024
ORF1ab/nsp14A2-B405V405VgtGgtT11B.1.5480.035714
ORF1ab/nsp14A2-B405V405LGtgTtg11B.1.5650.00081
ORF1ab/nsp14A2-B405V405delGTG---11B.1.5960.000087
ORF1ab/nsp14A2-B405V405LGtgTtg11B.1.617.10.000129
ORF1ab/nsp14A2-B405V405VgtGgtT11B.1.617.10.000129
ORF1ab/nsp14A2-B405V405GgTggGg11B.1.617.20.000004
ORF1ab/nsp14A2-B405V405SGTGAGT11B.1.617.20.000004
ORF1ab/nsp14A2-B405V405del1gTgg-g11B.1.617.20.000004
ORF1ab/nsp14A2-B405V405AgTggCg11B.1.617.20.000004
ORF1ab/nsp14A2-B405V405LGtgTtg11B.1.6370.000073
ORF1ab/nsp14A2-B405V405AgTggCg11B.1.6370.000073
ORF1ab/nsp14A2-B405V405LGtgTtg11B.350.007812
ORF1ab/nsp14A2-B405V405VgtGgtC11B.400.000364
ORF1ab/nsp14A2-B405V405LGtgTtg11B.6.60.000889
ORF1ab/nsp14A2-B405V405GgTggGg11B.610.005747
ORF1ab/nsp14A2-B405V405VgtGgtA11C.300.001727
ORF1ab/nsp14A2-B405V405VgtGgtT11C.36.30.000567
ORF1ab/nsp14A2-B405V405VgtGgtT11C.370.000116
ORF1ab/nsp14A2-B405V405LGtgTtg11D.30.005917
ORF1ab/nsp14A2-B405V405LGtgTtg11L.10.001905
ORF1ab/nsp14A2-B405V405LGtgTtg11P.1.140.000048
ORF1ab/nsp14A2-B405V405VgtGgtT11P.1.170.000162
ORF1ab/nsp14A2-B405V405VgtGgtT11P.20.000187
ORF1ab/nsp14A2-B405V405delGTG---11U.30.003861