CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp14A2-B : CodonNum = 384

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp14A2-B384F384FF6309FsynttTttC119119119189-19191
ORF1ab/nsp14A2-B384F384delF6309deldelTTT---4040119189-19191
ORF1ab/nsp14A2-B384F384LF6309LnonsynTttCtt37330.89189219189-19191
ORF1ab/nsp14A2-B384F384LF6309LnonsynttTttG3740.10810819189-19191
ORF1ab/nsp14A2-B384F384YF6309YnonsyntTttAt99119189-19191
ORF1ab/nsp14A2-B384F384IF6309InonsynTttAtt66119189-19191
ORF1ab/nsp14A2-B384F384del1F6309del1delTtt-tt650.83333319189-19191
ORF1ab/nsp14A2-B384F384del1F6309del1delttTtt-610.16666719189-19191
ORF1ab/nsp14A2-B384F384SF6309SnonsyntTttCt44119189-19191
ORF1ab/nsp14A2-B384F384VF6309VnonsynTttGtt33119189-19191
ORF1ab/nsp14A2-B384F384XF6309XnonsyntTTtAG22119189-19191
ORF1ab/nsp14A2-B384F384del2F6309del2delTTt--t210.519189-19191
ORF1ab/nsp14A2-B384F384del2F6309del2deltTTt--210.519189-19191

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp14A2-B384F384FttTttC119119All0.000023
ORF1ab/nsp14A2-B384F384FttTttC5050AY.180.505051
ORF1ab/nsp14A2-B384F384delTTT---4040All0.000008
ORF1ab/nsp14A2-B384F384LTttCtt3337All0.000006
ORF1ab/nsp14A2-B384F384LttTttG437All0.000001
ORF1ab/nsp14A2-B384F384FttTttC3131B.1.1.70.000028
ORF1ab/nsp14A2-B384F384delTTT---1919B.1.1.70.000017
ORF1ab/nsp14A2-B384F384FttTttC1313AY.250.000078
ORF1ab/nsp14A2-B384F384LTttCtt911B.1.1.70.000008
ORF1ab/nsp14A2-B384F384LttTttG211B.1.1.70.000002
ORF1ab/nsp14A2-B384F384YtTttAt99All0.000002
ORF1ab/nsp14A2-B384F384LTttCtt99B.1.1770.000119
ORF1ab/nsp14A2-B384F384FttTttC77AY.4.20.000152
ORF1ab/nsp14A2-B384F384ITttAtt66All0.000001
ORF1ab/nsp14A2-B384F384del1Ttt-tt56All0.000001
ORF1ab/nsp14A2-B384F384del1ttTtt-16All0
ORF1ab/nsp14A2-B384F384StTttCt44All0.000001
ORF1ab/nsp14A2-B384F384delTTT---44B.1.1770.000053
ORF1ab/nsp14A2-B384F384VTttGtt33All0.000001
ORF1ab/nsp14A2-B384F384FttTttC33AY.440.000018
ORF1ab/nsp14A2-B384F384YtTttAt33B.1.1.70.000003
ORF1ab/nsp14A2-B384F384LTttCtt33B.1.1600.000094
ORF1ab/nsp14A2-B384F384LttTttG220.111111
ORF1ab/nsp14A2-B384F384YtTttAt220.111111
ORF1ab/nsp14A2-B384F384XtTTtAG220.111111
ORF1ab/nsp14A2-B384F384XtTTtAG22All0
ORF1ab/nsp14A2-B384F384del2TTt--t12All0
ORF1ab/nsp14A2-B384F384del2tTTt--12All0
ORF1ab/nsp14A2-B384F384delTTT---22AY.4.50.000215
ORF1ab/nsp14A2-B384F384FttTttC22B.10.000018
ORF1ab/nsp14A2-B384F384LTttCtt22B.1.10.000036
ORF1ab/nsp14A2-B384F384LTttCtt22B.1.1.630.000772
ORF1ab/nsp14A2-B384F384del1Ttt-tt22B.1.1.70.000002
ORF1ab/nsp14A2-B384F384LTttCtt22B.1.20.000018
ORF1ab/nsp14A2-B384F384del1Ttt-tt22B.1.20.000018
ORF1ab/nsp14A2-B384F384FttTttC22B.1.20.000018
ORF1ab/nsp14A2-B384F384ITttAtt110.055556
ORF1ab/nsp14A2-B384F384YtTttAt11A0.000387
ORF1ab/nsp14A2-B384F384LTttCtt11A.270.001656
ORF1ab/nsp14A2-B384F384FttTttC11AY.100.00053
ORF1ab/nsp14A2-B384F384del1Ttt-tt11AY.1000.000046
ORF1ab/nsp14A2-B384F384FttTttC11AY.1030.000006
ORF1ab/nsp14A2-B384F384ITttAtt11AY.1160.000287
ORF1ab/nsp14A2-B384F384FttTttC11AY.1200.000037
ORF1ab/nsp14A2-B384F384YtTttAt11AY.260.000028
ORF1ab/nsp14A2-B384F384StTttCt11AY.390.000025
ORF1ab/nsp14A2-B384F384del1ttTtt-11AY.40.000002
ORF1ab/nsp14A2-B384F384delTTT---11AY.40.000002
ORF1ab/nsp14A2-B384F384FttTttC11AY.40.000002
ORF1ab/nsp14A2-B384F384FttTttC11AY.4.2.10.000149
ORF1ab/nsp14A2-B384F384delTTT---11AY.430.000004
ORF1ab/nsp14A2-B384F384LTttCtt11AY.470.000031
ORF1ab/nsp14A2-B384F384delTTT---11AY.50.000021
ORF1ab/nsp14A2-B384F384delTTT---11AY.720.001361
ORF1ab/nsp14A2-B384F384FttTttC11B0.000128
ORF1ab/nsp14A2-B384F384StTttCt11B.10.000009
ORF1ab/nsp14A2-B384F384YtTttAt11B.10.000009
ORF1ab/nsp14A2-B384F384del2TTt--t11B.10.000009
ORF1ab/nsp14A2-B384F384delTTT---11B.1.10.000018
ORF1ab/nsp14A2-B384F384VTttGtt11B.1.10.000018
ORF1ab/nsp14A2-B384F384ITttAtt11B.1.10.000018
ORF1ab/nsp14A2-B384F384FttTttC11B.1.10.000018
ORF1ab/nsp14A2-B384F384delTTT---11B.1.1.280.000311
ORF1ab/nsp14A2-B384F384delTTT---11B.1.1.3060.000438
ORF1ab/nsp14A2-B384F384FttTttC11B.1.1.3110.000358
ORF1ab/nsp14A2-B384F384delTTT---11B.1.1.3110.000358
ORF1ab/nsp14A2-B384F384LTttCtt11B.1.1.3480.000796
ORF1ab/nsp14A2-B384F384LTttCtt11B.1.1.5190.00004
ORF1ab/nsp14A2-B384F384VTttGtt11B.1.1.70.000001
ORF1ab/nsp14A2-B384F384StTttCt11B.1.1.70.000001
ORF1ab/nsp14A2-B384F384del2tTTt--11B.1.1.70.000001
ORF1ab/nsp14A2-B384F384ITttAtt11B.1.1490.003425
ORF1ab/nsp14A2-B384F384ITttAtt11B.1.160.80.001289
ORF1ab/nsp14A2-B384F384FttTttC11B.1.1770.000013
ORF1ab/nsp14A2-B384F384delTTT---11B.1.177.150.000631
ORF1ab/nsp14A2-B384F384VTttGtt11B.1.177.40.000211
ORF1ab/nsp14A2-B384F384delTTT---11B.1.177.510.004566
ORF1ab/nsp14A2-B384F384delTTT---11B.1.177.60.000977
ORF1ab/nsp14A2-B384F384delTTT---11B.1.177.690.001484
ORF1ab/nsp14A2-B384F384FttTttC11B.1.1890.004292
ORF1ab/nsp14A2-B384F384delTTT---11B.1.20.000009
ORF1ab/nsp14A2-B384F384delTTT---11B.1.2210.000071
ORF1ab/nsp14A2-B384F384LTttCtt11B.1.2220.001692
ORF1ab/nsp14A2-B384F384delTTT---11B.1.258.30.001675
ORF1ab/nsp14A2-B384F384LTttCtt11B.1.36.380.001642
ORF1ab/nsp14A2-B384F384StTttCt11B.1.617.20.000004
ORF1ab/nsp14A2-B384F384YtTttAt11B.1.617.20.000004
ORF1ab/nsp14A2-B384F384FttTttC11B.1.617.20.000004
ORF1ab/nsp14A2-B384F384ITttAtt11B.1.6280.000352