CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp14A2-B | 381 | V381L | V6306L | nonsyn | Gta | Tta | 4492 | 4484 | 0.998219 | 19180-19182 |
ORF1ab/nsp14A2-B | 381 | V381L | V6306L | nonsyn | Gta | Cta | 4492 | 8 | 0.00178094 | 19180-19182 |
ORF1ab/nsp14A2-B | 381 | V381V | V6306V | syn | gtA | gtG | 1629 | 1563 | 0.959484 | 19180-19182 |
ORF1ab/nsp14A2-B | 381 | V381V | V6306V | syn | gtA | gtT | 1629 | 56 | 0.0343769 | 19180-19182 |
ORF1ab/nsp14A2-B | 381 | V381V | V6306V | syn | gtA | gtC | 1629 | 10 | 0.00613874 | 19180-19182 |
ORF1ab/nsp14A2-B | 381 | V381I | V6306I | nonsyn | Gta | Ata | 482 | 482 | 1 | 19180-19182 |
ORF1ab/nsp14A2-B | 381 | V381del | V6306del | del | GTA | --- | 38 | 38 | 1 | 19180-19182 |
ORF1ab/nsp14A2-B | 381 | V381A | V6306A | nonsyn | gTa | gCa | 25 | 25 | 1 | 19180-19182 |
ORF1ab/nsp14A2-B | 381 | V381E | V6306E | nonsyn | gTa | gAa | 3 | 3 | 1 | 19180-19182 |
ORF1ab/nsp14A2-B | 381 | V381del2 | V6306del2 | del | gTA | g-- | 3 | 3 | 1 | 19180-19182 |
ORF1ab/nsp14A2-B | 381 | V381del1 | V6306del1 | del | Gta | -ta | 2 | 1 | 0.5 | 19180-19182 |
ORF1ab/nsp14A2-B | 381 | V381del1 | V6306del1 | del | gtA | gt- | 2 | 1 | 0.5 | 19180-19182 |
ORF1ab/nsp14A2-B | 381 | V381G | V6306G | nonsyn | gTA | gGG | 1 | 1 | 1 | 19180-19182 |
ORF1ab/nsp14A2-B | 381 | V381D | V6306D | nonsyn | gTA | gAT | 1 | 1 | 1 | 19180-19182 |
ORF1ab/nsp14A2-B | 381 | V381F | V6306F | nonsyn | GtA | TtT | 1 | 1 | 1 | 19180-19182 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp14A2-B | 381 | V381L | Gta | Tta | 4484 | 4492 | All | 0.000858 |
ORF1ab/nsp14A2-B | 381 | V381L | Gta | Cta | 8 | 4492 | All | 0.000002 |
ORF1ab/nsp14A2-B | 381 | V381L | Gta | Tta | 3093 | 3093 | B.1.311 | 0.849259 |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtG | 1563 | 1629 | All | 0.000299 |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtT | 56 | 1629 | All | 0.000011 |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtC | 10 | 1629 | All | 0.000002 |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtG | 745 | 750 | B.1.1.7 | 0.000667 |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtT | 5 | 750 | B.1.1.7 | 0.000004 |
ORF1ab/nsp14A2-B | 381 | V381I | Gta | Ata | 482 | 482 | All | 0.000092 |
ORF1ab/nsp14A2-B | 381 | V381L | Gta | Tta | 305 | 309 | AY.4 | 0.000475 |
ORF1ab/nsp14A2-B | 381 | V381L | Gta | Cta | 4 | 309 | AY.4 | 0.000006 |
ORF1ab/nsp14A2-B | 381 | V381I | Gta | Ata | 265 | 265 | B.1.1.7 | 0.000237 |
ORF1ab/nsp14A2-B | 381 | V381L | Gta | Tta | 178 | 178 | AT.1 | 0.912821 |
ORF1ab/nsp14A2-B | 381 | V381L | Gta | Tta | 163 | 163 | B.1 | 0.001493 |
ORF1ab/nsp14A2-B | 381 | V381L | Gta | Tta | 151 | 152 | B.1.1.7 | 0.000135 |
ORF1ab/nsp14A2-B | 381 | V381L | Gta | Cta | 1 | 152 | B.1.1.7 | 0.000001 |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtG | 140 | 140 | AY.25 | 0.000842 |
ORF1ab/nsp14A2-B | 381 | V381L | Gta | Tta | 94 | 95 | B.1.617.2 | 0.000354 |
ORF1ab/nsp14A2-B | 381 | V381L | Gta | Cta | 1 | 95 | B.1.617.2 | 0.000004 |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtG | 82 | 82 | B.1.2 | 0.000722 |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtG | 47 | 71 | AY.43 | 0.000208 |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtT | 23 | 71 | AY.43 | 0.000102 |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtC | 1 | 71 | AY.43 | 0.000004 |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtG | 65 | 66 | AY.44 | 0.000396 |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtT | 1 | 66 | AY.44 | 0.000006 |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtG | 59 | 59 | B.1.617.2 | 0.000222 |
ORF1ab/nsp14A2-B | 381 | V381L | Gta | Tta | 58 | 58 | B.1.2 | 0.000511 |
ORF1ab/nsp14A2-B | 381 | V381L | Gta | Tta | 55 | 55 | B.1.1.58 | 0.295699 |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtG | 47 | 54 | AY.4 | 0.000073 |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtT | 6 | 54 | AY.4 | 0.000009 |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtC | 1 | 54 | AY.4 | 0.000002 |
ORF1ab/nsp14A2-B | 381 | V381I | Gta | Ata | 50 | 50 | AY.4 | 0.000078 |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtG | 44 | 45 | AY.103 | 0.000273 |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtT | 1 | 45 | AY.103 | 0.000006 |
ORF1ab/nsp14A2-B | 381 | V381del | GTA | --- | 38 | 38 | All | 0.000007 |
ORF1ab/nsp14A2-B | 381 | V381L | Gta | Tta | 34 | 34 | AY.44 | 0.000207 |
ORF1ab/nsp14A2-B | 381 | V381L | Gta | Tta | 31 | 31 | AY.103 | 0.000192 |
ORF1ab/nsp14A2-B | 381 | V381L | Gta | Tta | 28 | 28 | Q.4 | 0.012733 |
ORF1ab/nsp14A2-B | 381 | V381A | gTa | gCa | 25 | 25 | All | 0.000005 |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtG | 25 | 25 | AY.26 | 0.000708 |
ORF1ab/nsp14A2-B | 381 | V381L | Gta | Tta | 24 | 24 | AY.43 | 0.000106 |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtG | 22 | 22 | B.1.1 | 0.000399 |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtG | 21 | 21 | B.1.429 | 0.000494 |
ORF1ab/nsp14A2-B | 381 | V381I | Gta | Ata | 19 | 19 | B.1.1.369 | 0.008478 |
ORF1ab/nsp14A2-B | 381 | V381del | GTA | --- | 19 | 19 | B.1.1.7 | 0.000017 |
ORF1ab/nsp14A2-B | 381 | V381I | Gta | Ata | 18 | 18 | B.1.617.2 | 0.000068 |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtG | 17 | 17 | B.1.1.519 | 0.000675 |
ORF1ab/nsp14A2-B | 381 | V381L | Gta | Tta | 16 | 16 | AY.102 | 0.000424 |
ORF1ab/nsp14A2-B | 381 | V381L | Gta | Tta | 15 | 15 | AY.20 | 0.000583 |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtG | 9 | 15 | AY.3 | 0.00009 |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtC | 6 | 15 | AY.3 | 0.00006 |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtG | 15 | 15 | B.1.177.35 | 0.010366 |
ORF1ab/nsp14A2-B | 381 | V381I | Gta | Ata | 15 | 15 | B.1.351.2 | 0.004539 |
ORF1ab/nsp14A2-B | 381 | V381L | Gta | Tta | 15 | 15 | B.1.526 | 0.000353 |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtG | 14 | 14 | AY.47 | 0.000435 |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtG | 13 | 14 | B.1 | 0.000119 |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtT | 1 | 14 | B.1 | 0.000009 |
ORF1ab/nsp14A2-B | 381 | V381L | Gta | Tta | 14 | 14 | B.1.438.1 | 0.001502 |
ORF1ab/nsp14A2-B | 381 | V381L | Gta | Tta | 13 | 13 | AY.5.3 | 0.004386 |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtG | 13 | 13 | B.1.578 | 0.232143 |
ORF1ab/nsp14A2-B | 381 | V381A | gTa | gCa | 12 | 12 | B.1.1.7 | 0.000011 |
ORF1ab/nsp14A2-B | 381 | V381L | Gta | Tta | 11 | 11 | AY.39 | 0.000272 |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtG | 9 | 10 | AY.102 | 0.000239 |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtC | 1 | 10 | AY.102 | 0.000027 |
ORF1ab/nsp14A2-B | 381 | V381L | Gta | Tta | 10 | 10 | AY.99.2 | 0.000922 |
ORF1ab/nsp14A2-B | 381 | V381I | Gta | Ata | 9 | 9 | AY.103 | 0.000056 |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtG | 9 | 9 | B.1.160 | 0.000281 |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtG | 8 | 8 | AY.45 | 0.000973 |
ORF1ab/nsp14A2-B | 381 | V381I | Gta | Ata | 8 | 8 | AY.7 | 0.001568 |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtG | 8 | 8 | C.37 | 0.000929 |
ORF1ab/nsp14A2-B | 381 | V381I | Gta | Ata | 8 | 8 | P.1.12 | 0.003872 |
ORF1ab/nsp14A2-B | 381 | V381L | Gta | Tta | 7 | 7 | AY.25 | 0.000042 |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtG | 7 | 7 | AY.39 | 0.000173 |
ORF1ab/nsp14A2-B | 381 | V381I | Gta | Ata | 7 | 7 | AY.44 | 0.000043 |
ORF1ab/nsp14A2-B | 381 | V381L | Gta | Tta | 7 | 7 | B.1.1.70 | 0.002387 |
ORF1ab/nsp14A2-B | 381 | V381L | Gta | Tta | 7 | 7 | B.1.177 | 0.000092 |
ORF1ab/nsp14A2-B | 381 | V381I | Gta | Ata | 7 | 7 | B.1.2 | 0.000062 |
ORF1ab/nsp14A2-B | 381 | V381I | Gta | Ata | 7 | 7 | B.1.36.31 | 0.012259 |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtT | 7 | 7 | P.1.1 | 0.002224 |
ORF1ab/nsp14A2-B | 381 | V381I | Gta | Ata | 6 | 6 | AY.9.2.1 | 0.011858 |
ORF1ab/nsp14A2-B | 381 | V381L | Gta | Tta | 6 | 6 | B.1.1 | 0.000109 |
ORF1ab/nsp14A2-B | 381 | V381L | Gta | Tta | 6 | 6 | B.1.177.73 | 0.003398 |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtG | 6 | 6 | B.1.258.7 | 0.011472 |
ORF1ab/nsp14A2-B | 381 | V381L | Gta | Tta | 6 | 6 | B.1.595 | 0.001566 |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtG | 6 | 6 | Q.8 | 0.000989 |
ORF1ab/nsp14A2-B | 381 | V381I | Gta | Ata | 6 | 6 | W.3 | 0.031579 |
ORF1ab/nsp14A2-B | 381 | V381I | Gta | Ata | 5 | 5 | AY.26 | 0.000142 |
ORF1ab/nsp14A2-B | 381 | V381I | Gta | Ata | 5 | 5 | AY.43 | 0.000022 |
ORF1ab/nsp14A2-B | 381 | V381I | Gta | Ata | 5 | 5 | AY.65 | 0.002665 |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtG | 5 | 5 | AY.79 | 0.006053 |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtG | 5 | 5 | B.1.1.222 | 0.00102 |
ORF1ab/nsp14A2-B | 381 | V381L | Gta | Tta | 5 | 5 | B.1.177.12 | 0.000758 |
ORF1ab/nsp14A2-B | 381 | V381L | Gta | Tta | 5 | 5 | B.1.243 | 0.000348 |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtG | 4 | 5 | P.1 | 0.000063 |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtT | 1 | 5 | P.1 | 0.000016 |
ORF1ab/nsp14A2-B | 381 | V381L | Gta | Tta | 4 | 4 | AY.100 | 0.000184 |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtG | 3 | 4 | AY.118 | 0.000188 |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtT | 1 | 4 | AY.118 | 0.000063 |
ORF1ab/nsp14A2-B | 381 | V381L | Gta | Tta | 4 | 4 | AY.29 | 0.000063 |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtG | 4 | 4 | AY.4.2 | 0.000087 |
ORF1ab/nsp14A2-B | 381 | V381L | Gta | Tta | 4 | 4 | AY.46 | 0.000416 |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtG | 4 | 4 | AY.64 | 0.002381 |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtG | 4 | 4 | AY.85 | 0.001709 |
ORF1ab/nsp14A2-B | 381 | V381L | Gta | Tta | 4 | 4 | B.1.1.519 | 0.000159 |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtG | 4 | 4 | B.1.177 | 0.000053 |
ORF1ab/nsp14A2-B | 381 | V381del | GTA | --- | 4 | 4 | B.1.177 | 0.000053 |
ORF1ab/nsp14A2-B | 381 | V381L | Gta | Tta | 4 | 4 | B.1.429 | 0.000094 |
ORF1ab/nsp14A2-B | 381 | V381L | Gta | Tta | 4 | 4 | B.1.510 | 0.105263 |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtG | 4 | 4 | B.1.526 | 0.000094 |
ORF1ab/nsp14A2-B | 381 | V381del2 | gTA | g-- | 3 | 3 | All | 0.000001 |
ORF1ab/nsp14A2-B | 381 | V381E | gTa | gAa | 3 | 3 | All | 0.000001 |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtG | 3 | 3 | AY.16 | 0.001139 |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtG | 3 | 3 | AY.29 | 0.000047 |
ORF1ab/nsp14A2-B | 381 | V381L | Gta | Tta | 3 | 3 | AY.3 | 0.00003 |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtG | 3 | 3 | AY.3.1 | 0.000256 |
ORF1ab/nsp14A2-B | 381 | V381L | Gta | Tta | 3 | 3 | AY.47 | 0.000093 |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtG | 3 | 3 | AY.9.2 | 0.00011 |
ORF1ab/nsp14A2-B | 381 | V381L | Gta | Tta | 3 | 3 | B | 0.000383 |
ORF1ab/nsp14A2-B | 381 | V381A | gTa | gCa | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp14A2-B | 381 | V381L | Gta | Tta | 3 | 3 | B.1.119 | 0.031579 |
ORF1ab/nsp14A2-B | 381 | V381I | Gta | Ata | 3 | 3 | B.1.177 | 0.00004 |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtG | 3 | 3 | B.1.221 | 0.000213 |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtG | 3 | 3 | B.1.258.11 | 0.001189 |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtG | 3 | 3 | B.1.298 | 0.006342 |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtG | 3 | 3 | B.1.36.17 | 0.001482 |
ORF1ab/nsp14A2-B | 381 | V381I | Gta | Ata | 3 | 3 | B.1.429 | 0.000071 |
ORF1ab/nsp14A2-B | 381 | V381L | Gta | Tta | 3 | 3 | B.1.93 | 0.002801 |
ORF1ab/nsp14A2-B | 381 | V381I | Gta | Ata | 3 | 3 | C.37 | 0.000348 |
ORF1ab/nsp14A2-B | 381 | V381del1 | Gta | -ta | 1 | 2 | All | 0 |
ORF1ab/nsp14A2-B | 381 | V381del1 | gtA | gt- | 1 | 2 | All | 0 |
ORF1ab/nsp14A2-B | 381 | V381I | Gta | Ata | 2 | 2 | AY.100 | 0.000092 |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtG | 1 | 2 | AY.101 | 0.00049 |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtT | 1 | 2 | AY.101 | 0.00049 |
ORF1ab/nsp14A2-B | 381 | V381I | Gta | Ata | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp14A2-B | 381 | V381I | Gta | Ata | 2 | 2 | AY.107 | 0.000932 |
ORF1ab/nsp14A2-B | 381 | V381L | Gta | Tta | 2 | 2 | AY.33 | 0.000134 |
ORF1ab/nsp14A2-B | 381 | V381L | Gta | Tta | 2 | 2 | AY.39.1 | 0.000079 |
ORF1ab/nsp14A2-B | 381 | V381L | Gta | Tta | 2 | 2 | AY.40 | 0.001929 |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtG | 2 | 2 | AY.42 | 0.00008 |
ORF1ab/nsp14A2-B | 381 | V381L | Gta | Tta | 2 | 2 | AY.42 | 0.00008 |
ORF1ab/nsp14A2-B | 381 | V381del | GTA | --- | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtG | 2 | 2 | AY.46.4 | 0.000329 |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtG | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp14A2-B | 381 | V381L | Gta | Tta | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtG | 1 | 2 | AY.6 | 0.000041 |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtT | 1 | 2 | AY.6 | 0.000041 |
ORF1ab/nsp14A2-B | 381 | V381L | Gta | Tta | 2 | 2 | AY.61 | 0.00021 |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtG | 2 | 2 | AY.70 | 0.000417 |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtG | 2 | 2 | AY.71 | 0.00095 |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtG | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp14A2-B | 381 | V381I | Gta | Ata | 2 | 2 | AY.75.1 | 0.000361 |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtG | 2 | 2 | AY.84 | 0.000875 |
ORF1ab/nsp14A2-B | 381 | V381L | Gta | Tta | 2 | 2 | AY.85 | 0.000854 |
ORF1ab/nsp14A2-B | 381 | V381I | Gta | Ata | 2 | 2 | B.1.1.306 | 0.000877 |
ORF1ab/nsp14A2-B | 381 | V381L | Gta | Tta | 2 | 2 | B.1.1.397 | 0.004505 |
ORF1ab/nsp14A2-B | 381 | V381L | Gta | Tta | 2 | 2 | B.1.1.432 | 0.002532 |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtG | 2 | 2 | B.1.177.42 | 0.001789 |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtG | 2 | 2 | B.1.177.73 | 0.001133 |
ORF1ab/nsp14A2-B | 381 | V381L | Gta | Tta | 2 | 2 | B.1.214.2 | 0.001199 |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtG | 2 | 2 | B.1.234 | 0.000264 |
ORF1ab/nsp14A2-B | 381 | V381L | Gta | Tta | 2 | 2 | B.1.241 | 0.001623 |
ORF1ab/nsp14A2-B | 381 | V381L | Gta | Tta | 2 | 2 | B.1.36 | 0.000292 |
ORF1ab/nsp14A2-B | 381 | V381L | Gta | Tta | 2 | 2 | B.1.36.16 | 0.002849 |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtG | 2 | 2 | B.1.36.29 | 0.001035 |
ORF1ab/nsp14A2-B | 381 | V381I | Gta | Ata | 2 | 2 | B.1.427 | 0.000101 |
ORF1ab/nsp14A2-B | 381 | V381L | Gta | Tta | 2 | 2 | B.1.438 | 0.013072 |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtG | 2 | 2 | B.1.438.1 | 0.000215 |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtT | 2 | 2 | B.1.575 | 0.000607 |
ORF1ab/nsp14A2-B | 381 | V381L | Gta | Tta | 2 | 2 | C.37 | 0.000232 |
ORF1ab/nsp14A2-B | 381 | V381L | Gta | Tta | 2 | 2 | P.1.10 | 0.000539 |
ORF1ab/nsp14A2-B | 381 | V381A | gTa | gCa | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtT | 2 | 2 | P.5 | 0.027397 |
ORF1ab/nsp14A2-B | 381 | V381I | Gta | Ata | 1 | 1 | 0.055556 | |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtG | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp14A2-B | 381 | V381L | Gta | Tta | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtG | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtT | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp14A2-B | 381 | V381G | gTA | gGG | 1 | 1 | All | 0 |
ORF1ab/nsp14A2-B | 381 | V381D | gTA | gAT | 1 | 1 | All | 0 |
ORF1ab/nsp14A2-B | 381 | V381F | GtA | TtT | 1 | 1 | All | 0 |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtG | 1 | 1 | AY.10 | 0.00053 |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtG | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtG | 1 | 1 | AY.107 | 0.000466 |
ORF1ab/nsp14A2-B | 381 | V381I | Gta | Ata | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtG | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp14A2-B | 381 | V381L | Gta | Tta | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtG | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtG | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp14A2-B | 381 | V381L | Gta | Tta | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp14A2-B | 381 | V381L | Gta | Tta | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp14A2-B | 381 | V381L | Gta | Cta | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp14A2-B | 381 | V381I | Gta | Ata | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp14A2-B | 381 | V381I | Gta | Ata | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtG | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp14A2-B | 381 | V381L | Gta | Tta | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtG | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp14A2-B | 381 | V381I | Gta | Ata | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp14A2-B | 381 | V381I | Gta | Ata | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp14A2-B | 381 | V381L | Gta | Tta | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtG | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp14A2-B | 381 | V381L | Gta | Tta | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtG | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp14A2-B | 381 | V381L | Gta | Tta | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtG | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtG | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp14A2-B | 381 | V381A | gTa | gCa | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp14A2-B | 381 | V381I | Gta | Ata | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp14A2-B | 381 | V381A | gTa | gCa | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp14A2-B | 381 | V381del | GTA | --- | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp14A2-B | 381 | V381I | Gta | Ata | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp14A2-B | 381 | V381del2 | gTA | g-- | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp14A2-B | 381 | V381A | gTa | gCa | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp14A2-B | 381 | V381I | Gta | Ata | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp14A2-B | 381 | V381L | Gta | Tta | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtG | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp14A2-B | 381 | V381L | Gta | Tta | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp14A2-B | 381 | V381del | GTA | --- | 1 | 1 | AY.48 | 0.000465 |
ORF1ab/nsp14A2-B | 381 | V381I | Gta | Ata | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp14A2-B | 381 | V381del | GTA | --- | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp14A2-B | 381 | V381L | Gta | Tta | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp14A2-B | 381 | V381L | Gta | Tta | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp14A2-B | 381 | V381I | Gta | Ata | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp14A2-B | 381 | V381L | Gta | Tta | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtG | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtG | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtG | 1 | 1 | AY.58 | 0.000907 |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtG | 1 | 1 | AY.63 | 0.000387 |
ORF1ab/nsp14A2-B | 381 | V381L | Gta | Tta | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtG | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp14A2-B | 381 | V381L | Gta | Tta | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp14A2-B | 381 | V381I | Gta | Ata | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp14A2-B | 381 | V381del | GTA | --- | 1 | 1 | AY.72 | 0.001361 |
ORF1ab/nsp14A2-B | 381 | V381L | Gta | Tta | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp14A2-B | 381 | V381I | Gta | Ata | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp14A2-B | 381 | V381L | Gta | Tta | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp14A2-B | 381 | V381L | Gta | Tta | 1 | 1 | AY.77 | 0.001127 |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtG | 1 | 1 | AY.78 | 0.001541 |
ORF1ab/nsp14A2-B | 381 | V381L | Gta | Tta | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp14A2-B | 381 | V381D | gTA | gAT | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtG | 1 | 1 | AY.89 | 0.004902 |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtG | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp14A2-B | 381 | V381I | Gta | Ata | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp14A2-B | 381 | V381A | gTa | gCa | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp14A2-B | 381 | V381L | Gta | Tta | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtG | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp14A2-B | 381 | V381L | Gta | Tta | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp14A2-B | 381 | V381I | Gta | Ata | 1 | 1 | AY.97 | 0.001701 |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtG | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp14A2-B | 381 | V381L | Gta | Tta | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtG | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp14A2-B | 381 | V381E | gTa | gAa | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp14A2-B | 381 | V381del | GTA | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp14A2-B | 381 | V381I | Gta | Ata | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp14A2-B | 381 | V381L | Gta | Tta | 1 | 1 | B.1.1.139 | 0.022727 |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtG | 1 | 1 | B.1.1.205 | 0.003717 |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtG | 1 | 1 | B.1.1.279 | 0.001121 |
ORF1ab/nsp14A2-B | 381 | V381del | GTA | --- | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtG | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp14A2-B | 381 | V381del | GTA | --- | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp14A2-B | 381 | V381L | Gta | Tta | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp14A2-B | 381 | V381del | GTA | --- | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp14A2-B | 381 | V381L | Gta | Tta | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtG | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp14A2-B | 381 | V381L | Gta | Tta | 1 | 1 | B.1.1.370 | 0.012658 |
ORF1ab/nsp14A2-B | 381 | V381L | Gta | Tta | 1 | 1 | B.1.1.398 | 0.003226 |
ORF1ab/nsp14A2-B | 381 | V381L | Gta | Tta | 1 | 1 | B.1.1.428 | 0.009434 |
ORF1ab/nsp14A2-B | 381 | V381A | gTa | gCa | 1 | 1 | B.1.1.432 | 0.001266 |
ORF1ab/nsp14A2-B | 381 | V381L | Gta | Tta | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp14A2-B | 381 | V381L | Gta | Tta | 1 | 1 | B.1.1.450 | 0.034483 |
ORF1ab/nsp14A2-B | 381 | V381del1 | gtA | gt- | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp14A2-B | 381 | V381F | GtA | TtT | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp14A2-B | 381 | V381del1 | Gta | -ta | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp14A2-B | 381 | V381E | gTa | gAa | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtG | 1 | 1 | B.1.1.75 | 0.010638 |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtT | 1 | 1 | B.1.126 | 0.001276 |
ORF1ab/nsp14A2-B | 381 | V381L | Gta | Tta | 1 | 1 | B.1.147 | 0.000756 |
ORF1ab/nsp14A2-B | 381 | V381L | Gta | Cta | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp14A2-B | 381 | V381L | Gta | Tta | 1 | 1 | B.1.177.11 | 0.001698 |
ORF1ab/nsp14A2-B | 381 | V381I | Gta | Ata | 1 | 1 | B.1.177.11 | 0.001698 |
ORF1ab/nsp14A2-B | 381 | V381del | GTA | --- | 1 | 1 | B.1.177.51 | 0.004566 |
ORF1ab/nsp14A2-B | 381 | V381del | GTA | --- | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp14A2-B | 381 | V381del | GTA | --- | 1 | 1 | B.1.177.69 | 0.001484 |
ORF1ab/nsp14A2-B | 381 | V381E | gTa | gAa | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp14A2-B | 381 | V381del | GTA | --- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtG | 1 | 1 | B.1.219 | 0.009434 |
ORF1ab/nsp14A2-B | 381 | V381L | Gta | Tta | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp14A2-B | 381 | V381del | GTA | --- | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp14A2-B | 381 | V381L | Gta | Tta | 1 | 1 | B.1.222 | 0.001692 |
ORF1ab/nsp14A2-B | 381 | V381L | Gta | Tta | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtT | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtG | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp14A2-B | 381 | V381I | Gta | Ata | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp14A2-B | 381 | V381del2 | gTA | g-- | 1 | 1 | B.1.258.3 | 0.001675 |
ORF1ab/nsp14A2-B | 381 | V381L | Gta | Tta | 1 | 1 | B.1.279 | 0.000514 |
ORF1ab/nsp14A2-B | 381 | V381L | Gta | Tta | 1 | 1 | B.1.328 | 0.03125 |
ORF1ab/nsp14A2-B | 381 | V381L | Gta | Tta | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtG | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp14A2-B | 381 | V381L | Gta | Tta | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp14A2-B | 381 | V381I | Gta | Ata | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtG | 1 | 1 | B.1.36.35 | 0.002604 |
ORF1ab/nsp14A2-B | 381 | V381L | Gta | Tta | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp14A2-B | 381 | V381L | Gta | Tta | 1 | 1 | B.1.417 | 0.028571 |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtG | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp14A2-B | 381 | V381L | Gta | Tta | 1 | 1 | B.1.517 | 0.000427 |
ORF1ab/nsp14A2-B | 381 | V381A | gTa | gCa | 1 | 1 | B.1.524 | 0.001406 |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtG | 1 | 1 | B.1.524 | 0.001406 |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtG | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp14A2-B | 381 | V381L | Gta | Tta | 1 | 1 | B.1.558 | 0.004566 |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtG | 1 | 1 | B.1.575.1 | 0.002439 |
ORF1ab/nsp14A2-B | 381 | V381I | Gta | Ata | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp14A2-B | 381 | V381L | Gta | Tta | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtG | 1 | 1 | B.1.600 | 0.005848 |
ORF1ab/nsp14A2-B | 381 | V381L | Gta | Tta | 1 | 1 | B.1.605 | 0.005952 |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtG | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp14A2-B | 381 | V381L | Gta | Tta | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp14A2-B | 381 | V381G | gTA | gGG | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp14A2-B | 381 | V381L | Gta | Tta | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtT | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp14A2-B | 381 | V381L | Gta | Tta | 1 | 1 | B.1.634 | 0.003425 |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtG | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtG | 1 | 1 | B.4 | 0.002208 |
ORF1ab/nsp14A2-B | 381 | V381L | Gta | Tta | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp14A2-B | 381 | V381del2 | gTA | g-- | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp14A2-B | 381 | V381A | gTa | gCa | 1 | 1 | B.53 | 0.011765 |
ORF1ab/nsp14A2-B | 381 | V381L | Gta | Tta | 1 | 1 | C.37.1 | 0.002618 |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtG | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp14A2-B | 381 | V381L | Gta | Tta | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp14A2-B | 381 | V381A | gTa | gCa | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp14A2-B | 381 | V381I | Gta | Ata | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp14A2-B | 381 | V381L | Gta | Tta | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp14A2-B | 381 | V381L | Gta | Tta | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp14A2-B | 381 | V381L | Gta | Tta | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp14A2-B | 381 | V381L | Gta | Tta | 1 | 1 | P.3 | 0.001595 |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtG | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp14A2-B | 381 | V381V | gtA | gtC | 1 | 1 | Q.3 | 0.000145 |
ORF1ab/nsp14A2-B | 381 | V381L | Gta | Tta | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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