CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp14A2-B | 376 | K376K | K6301K | syn | aaA | aaG | 11923 | 11923 | 1 | 19165-19167 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp14A2-B | 376 | K376K | aaA | aaG | 11923 | 11923 | All | 0.00228 |
ORF1ab/nsp14A2-B | 376 | K376K | aaA | aaG | 11067 | 11067 | R.1 | 0.99613 |
ORF1ab/nsp14A2-B | 376 | K376K | aaA | aaG | 223 | 223 | B.1.1 | 0.004045 |
ORF1ab/nsp14A2-B | 376 | K376K | aaA | aaG | 101 | 101 | B.1.1.220 | 0.187732 |
ORF1ab/nsp14A2-B | 376 | K376K | aaA | aaG | 81 | 81 | B.1 | 0.000742 |
ORF1ab/nsp14A2-B | 376 | K376K | aaA | aaG | 77 | 77 | B.1.1.7 | 0.000069 |
ORF1ab/nsp14A2-B | 376 | K376K | aaA | aaG | 71 | 71 | B.1.609 | 0.034036 |
ORF1ab/nsp14A2-B | 376 | K376K | aaA | aaG | 34 | 34 | AY.4 | 0.000053 |
ORF1ab/nsp14A2-B | 376 | K376K | aaA | aaG | 34 | 34 | B.1.1.525 | 0.185792 |
ORF1ab/nsp14A2-B | 376 | K376K | aaA | aaG | 32 | 32 | B.1.160 | 0.000998 |
ORF1ab/nsp14A2-B | 376 | K376K | aaA | aaG | 17 | 17 | B.1.1.317 | 0.006999 |
ORF1ab/nsp14A2-B | 376 | K376K | aaA | aaG | 17 | 17 | B.1.617.2 | 0.000064 |
ORF1ab/nsp14A2-B | 376 | K376K | aaA | aaG | 12 | 12 | B.1.1.10 | 0.013378 |
ORF1ab/nsp14A2-B | 376 | K376K | aaA | aaG | 12 | 12 | B.1.1.214 | 0.000665 |
ORF1ab/nsp14A2-B | 376 | K376K | aaA | aaG | 12 | 12 | B.1.416 | 0.015228 |
ORF1ab/nsp14A2-B | 376 | K376K | aaA | aaG | 9 | 9 | AY.43 | 0.00004 |
ORF1ab/nsp14A2-B | 376 | K376K | aaA | aaG | 9 | 9 | B.1.1.50 | 0.00611 |
ORF1ab/nsp14A2-B | 376 | K376K | aaA | aaG | 7 | 7 | AY.46.6 | 0.000505 |
ORF1ab/nsp14A2-B | 376 | K376K | aaA | aaG | 5 | 5 | P.1 | 0.000079 |
ORF1ab/nsp14A2-B | 376 | K376K | aaA | aaG | 4 | 4 | AY.25 | 0.000024 |
ORF1ab/nsp14A2-B | 376 | K376K | aaA | aaG | 4 | 4 | AY.44 | 0.000024 |
ORF1ab/nsp14A2-B | 376 | K376K | aaA | aaG | 4 | 4 | B.1.1.222 | 0.000816 |
ORF1ab/nsp14A2-B | 376 | K376K | aaA | aaG | 4 | 4 | B.1.177 | 0.000053 |
ORF1ab/nsp14A2-B | 376 | K376K | aaA | aaG | 4 | 4 | B.1.2 | 0.000035 |
ORF1ab/nsp14A2-B | 376 | K376K | aaA | aaG | 4 | 4 | P.1.14 | 0.000191 |
ORF1ab/nsp14A2-B | 376 | K376K | aaA | aaG | 3 | 3 | AY.103 | 0.000019 |
ORF1ab/nsp14A2-B | 376 | K376K | aaA | aaG | 3 | 3 | AY.6 | 0.000123 |
ORF1ab/nsp14A2-B | 376 | K376K | aaA | aaG | 3 | 3 | B.1.1.39 | 0.001529 |
ORF1ab/nsp14A2-B | 376 | K376K | aaA | aaG | 3 | 3 | B.1.1.521 | 0.016043 |
ORF1ab/nsp14A2-B | 376 | K376K | aaA | aaG | 3 | 3 | C.36.3 | 0.001702 |
ORF1ab/nsp14A2-B | 376 | K376K | aaA | aaG | 2 | 2 | A | 0.000774 |
ORF1ab/nsp14A2-B | 376 | K376K | aaA | aaG | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp14A2-B | 376 | K376K | aaA | aaG | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp14A2-B | 376 | K376K | aaA | aaG | 2 | 2 | B.1.1.291 | 0.001485 |
ORF1ab/nsp14A2-B | 376 | K376K | aaA | aaG | 2 | 2 | B.1.1.294 | 0.002532 |
ORF1ab/nsp14A2-B | 376 | K376K | aaA | aaG | 2 | 2 | B.1.1.51 | 0.003436 |
ORF1ab/nsp14A2-B | 376 | K376K | aaA | aaG | 2 | 2 | B.1.1.83 | 0.00542 |
ORF1ab/nsp14A2-B | 376 | K376K | aaA | aaG | 2 | 2 | B.1.243 | 0.000139 |
ORF1ab/nsp14A2-B | 376 | K376K | aaA | aaG | 2 | 2 | B.1.311 | 0.000549 |
ORF1ab/nsp14A2-B | 376 | K376K | aaA | aaG | 2 | 2 | B.1.506 | 0.047619 |
ORF1ab/nsp14A2-B | 376 | K376K | aaA | aaG | 2 | 2 | B.1.526 | 0.000047 |
ORF1ab/nsp14A2-B | 376 | K376K | aaA | aaG | 1 | 1 | A.21 | 0.00277 |
ORF1ab/nsp14A2-B | 376 | K376K | aaA | aaG | 1 | 1 | A.23.1 | 0.000704 |
ORF1ab/nsp14A2-B | 376 | K376K | aaA | aaG | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp14A2-B | 376 | K376K | aaA | aaG | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp14A2-B | 376 | K376K | aaA | aaG | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp14A2-B | 376 | K376K | aaA | aaG | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp14A2-B | 376 | K376K | aaA | aaG | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp14A2-B | 376 | K376K | aaA | aaG | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp14A2-B | 376 | K376K | aaA | aaG | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp14A2-B | 376 | K376K | aaA | aaG | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp14A2-B | 376 | K376K | aaA | aaG | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp14A2-B | 376 | K376K | aaA | aaG | 1 | 1 | AY.58 | 0.000907 |
ORF1ab/nsp14A2-B | 376 | K376K | aaA | aaG | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp14A2-B | 376 | K376K | aaA | aaG | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp14A2-B | 376 | K376K | aaA | aaG | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp14A2-B | 376 | K376K | aaA | aaG | 1 | 1 | B | 0.000128 |
ORF1ab/nsp14A2-B | 376 | K376K | aaA | aaG | 1 | 1 | B.1.1.196 | 0.005714 |
ORF1ab/nsp14A2-B | 376 | K376K | aaA | aaG | 1 | 1 | B.1.1.198 | 0.001468 |
ORF1ab/nsp14A2-B | 376 | K376K | aaA | aaG | 1 | 1 | B.1.1.236 | 0.006897 |
ORF1ab/nsp14A2-B | 376 | K376K | aaA | aaG | 1 | 1 | B.1.1.263 | 0.001558 |
ORF1ab/nsp14A2-B | 376 | K376K | aaA | aaG | 1 | 1 | B.1.1.277 | 0.000759 |
ORF1ab/nsp14A2-B | 376 | K376K | aaA | aaG | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp14A2-B | 376 | K376K | aaA | aaG | 1 | 1 | B.1.1.305 | 0.003861 |
ORF1ab/nsp14A2-B | 376 | K376K | aaA | aaG | 1 | 1 | B.1.1.326 | 0.001761 |
ORF1ab/nsp14A2-B | 376 | K376K | aaA | aaG | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp14A2-B | 376 | K376K | aaA | aaG | 1 | 1 | B.1.1.413 | 0.006897 |
ORF1ab/nsp14A2-B | 376 | K376K | aaA | aaG | 1 | 1 | B.1.1.464 | 0.001473 |
ORF1ab/nsp14A2-B | 376 | K376K | aaA | aaG | 1 | 1 | B.1.1.8 | 0.003584 |
ORF1ab/nsp14A2-B | 376 | K376K | aaA | aaG | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp14A2-B | 376 | K376K | aaA | aaG | 1 | 1 | B.1.161 | 0.017241 |
ORF1ab/nsp14A2-B | 376 | K376K | aaA | aaG | 1 | 1 | B.1.177.84 | 0.006667 |
ORF1ab/nsp14A2-B | 376 | K376K | aaA | aaG | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp14A2-B | 376 | K376K | aaA | aaG | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp14A2-B | 376 | K376K | aaA | aaG | 1 | 1 | B.1.36.26 | 0.002857 |
ORF1ab/nsp14A2-B | 376 | K376K | aaA | aaG | 1 | 1 | B.1.375 | 0.00082 |
ORF1ab/nsp14A2-B | 376 | K376K | aaA | aaG | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp14A2-B | 376 | K376K | aaA | aaG | 1 | 1 | B.1.436 | 0.001029 |
ORF1ab/nsp14A2-B | 376 | K376K | aaA | aaG | 1 | 1 | B.1.466 | 0.023256 |
ORF1ab/nsp14A2-B | 376 | K376K | aaA | aaG | 1 | 1 | B.1.468 | 0.005714 |
ORF1ab/nsp14A2-B | 376 | K376K | aaA | aaG | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp14A2-B | 376 | K376K | aaA | aaG | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp14A2-B | 376 | K376K | aaA | aaG | 1 | 1 | P.1.15 | 0.000232 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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