CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp14A2-B | 374 | S374F | S6299F | nonsyn | tCt | tTt | 28202 | 28202 | 1 | 19159-19161 |
ORF1ab/nsp14A2-B | 374 | S374S | S6299S | syn | tcT | tcC | 604 | 551 | 0.912252 | 19159-19161 |
ORF1ab/nsp14A2-B | 374 | S374S | S6299S | syn | tcT | tcA | 604 | 40 | 0.0662252 | 19159-19161 |
ORF1ab/nsp14A2-B | 374 | S374S | S6299S | syn | tcT | tcG | 604 | 13 | 0.0215232 | 19159-19161 |
ORF1ab/nsp14A2-B | 374 | S374A | S6299A | nonsyn | Tct | Gct | 391 | 391 | 1 | 19159-19161 |
ORF1ab/nsp14A2-B | 374 | S374del | S6299del | del | TCT | --- | 40 | 40 | 1 | 19159-19161 |
ORF1ab/nsp14A2-B | 374 | S374P | S6299P | nonsyn | Tct | Cct | 37 | 37 | 1 | 19159-19161 |
ORF1ab/nsp14A2-B | 374 | S374Y | S6299Y | nonsyn | tCt | tAt | 27 | 27 | 1 | 19159-19161 |
ORF1ab/nsp14A2-B | 374 | S374T | S6299T | nonsyn | Tct | Act | 6 | 6 | 1 | 19159-19161 |
ORF1ab/nsp14A2-B | 374 | S374I | S6299I | nonsyn | TCt | ATt | 3 | 3 | 1 | 19159-19161 |
ORF1ab/nsp14A2-B | 374 | S374L | S6299L | nonsyn | TCT | CTG | 2 | 2 | 1 | 19159-19161 |
ORF1ab/nsp14A2-B | 374 | S374H | S6299H | nonsyn | TCt | CAt | 1 | 1 | 1 | 19159-19161 |
ORF1ab/nsp14A2-B | 374 | S374del1 | S6299del1 | del | tCt | t-t | 1 | 1 | 1 | 19159-19161 |
ORF1ab/nsp14A2-B | 374 | S374C | S6299C | nonsyn | tCt | tGt | 1 | 1 | 1 | 19159-19161 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 28202 | 28202 | All | 0.005394 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 11225 | 11225 | AY.14 | 0.987942 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 9975 | 9975 | AY.54 | 0.951087 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 3180 | 3180 | AY.116.1 | 0.990346 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 1506 | 1506 | B.1.617.2 | 0.005671 |
ORF1ab/nsp14A2-B | 374 | S374S | tcT | tcC | 551 | 604 | All | 0.000105 |
ORF1ab/nsp14A2-B | 374 | S374S | tcT | tcA | 40 | 604 | All | 0.000008 |
ORF1ab/nsp14A2-B | 374 | S374S | tcT | tcG | 13 | 604 | All | 0.000002 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 449 | 449 | AY.15 | 0.997778 |
ORF1ab/nsp14A2-B | 374 | S374A | Tct | Gct | 391 | 391 | All | 0.000075 |
ORF1ab/nsp14A2-B | 374 | S374A | Tct | Gct | 326 | 326 | B.1.22 | 0.429513 |
ORF1ab/nsp14A2-B | 374 | S374S | tcT | tcC | 215 | 215 | AY.9.2 | 0.007897 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 182 | 182 | AY.116 | 0.052194 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 142 | 142 | B.1.526 | 0.003338 |
ORF1ab/nsp14A2-B | 374 | S374S | tcT | tcC | 119 | 128 | B.1.1.7 | 0.000107 |
ORF1ab/nsp14A2-B | 374 | S374S | tcT | tcG | 6 | 128 | B.1.1.7 | 0.000005 |
ORF1ab/nsp14A2-B | 374 | S374S | tcT | tcA | 3 | 128 | B.1.1.7 | 0.000003 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 115 | 115 | AY.13 | 0.018513 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 104 | 104 | AY.3 | 0.001034 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 92 | 92 | B.1.1.7 | 0.000082 |
ORF1ab/nsp14A2-B | 374 | S374S | tcT | tcC | 83 | 86 | AY.25 | 0.000499 |
ORF1ab/nsp14A2-B | 374 | S374S | tcT | tcG | 2 | 86 | AY.25 | 0.000012 |
ORF1ab/nsp14A2-B | 374 | S374S | tcT | tcA | 1 | 86 | AY.25 | 0.000006 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 85 | 85 | AY.19 | 0.096921 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 83 | 83 | AY.44 | 0.000505 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 72 | 72 | AY.38 | 0.035946 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 64 | 64 | B.1 | 0.000586 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 46 | 46 | AY.103 | 0.000286 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 46 | 46 | AY.98 | 0.003634 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 45 | 45 | B.1.2 | 0.000396 |
ORF1ab/nsp14A2-B | 374 | S374del | TCT | --- | 40 | 40 | All | 0.000008 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 40 | 40 | AY.64 | 0.02381 |
ORF1ab/nsp14A2-B | 374 | S374P | Tct | Cct | 37 | 37 | All | 0.000007 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 32 | 32 | B.1.177 | 0.000421 |
ORF1ab/nsp14A2-B | 374 | S374A | Tct | Gct | 32 | 32 | B.1.22.1 | 1 |
ORF1ab/nsp14A2-B | 374 | S374Y | tCt | tAt | 27 | 27 | All | 0.000005 |
ORF1ab/nsp14A2-B | 374 | S374P | Tct | Cct | 26 | 26 | AY.44 | 0.000158 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 25 | 25 | AY.4 | 0.000039 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 24 | 24 | AY.65 | 0.012793 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 23 | 23 | B.1.177.86 | 0.004219 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 23 | 23 | P.1 | 0.000362 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 22 | 22 | AY.43 | 0.000097 |
ORF1ab/nsp14A2-B | 374 | S374del | TCT | --- | 22 | 22 | B.1.1.7 | 0.00002 |
ORF1ab/nsp14A2-B | 374 | S374S | tcT | tcC | 17 | 20 | AY.43 | 0.000075 |
ORF1ab/nsp14A2-B | 374 | S374S | tcT | tcA | 3 | 20 | AY.43 | 0.000013 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 19 | 19 | AY.75 | 0.001064 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 18 | 18 | AY.39 | 0.000445 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 18 | 18 | AY.75.1 | 0.003246 |
ORF1ab/nsp14A2-B | 374 | S374S | tcT | tcC | 17 | 17 | A.2.5 | 0.008483 |
ORF1ab/nsp14A2-B | 374 | S374S | tcT | tcC | 16 | 17 | B.1.258 | 0.001065 |
ORF1ab/nsp14A2-B | 374 | S374S | tcT | tcA | 1 | 17 | B.1.258 | 0.000067 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 16 | 16 | AY.114 | 0.003698 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 16 | 16 | AY.62 | 0.006972 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 15 | 15 | AY.105 | 0.009646 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 15 | 15 | AY.25 | 0.00009 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 15 | 15 | AY.48 | 0.006977 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 14 | 14 | AY.51 | 0.012727 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 13 | 13 | AY.52 | 0.010586 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 13 | 13 | AY.78 | 0.020031 |
ORF1ab/nsp14A2-B | 374 | S374S | tcT | tcC | 12 | 12 | A.2.5.3 | 0.123711 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 12 | 12 | AY.117 | 0.001014 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 12 | 12 | AY.16 | 0.004556 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 12 | 12 | AY.46 | 0.001249 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 11 | 11 | AY.47 | 0.000342 |
ORF1ab/nsp14A2-B | 374 | S374S | tcT | tcA | 11 | 11 | B.1.234 | 0.001451 |
ORF1ab/nsp14A2-B | 374 | S374S | tcT | tcC | 11 | 11 | B.1.526 | 0.000259 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 10 | 10 | AY.5 | 0.000206 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 10 | 10 | AY.7.1 | 0.001127 |
ORF1ab/nsp14A2-B | 374 | S374A | Tct | Gct | 10 | 10 | B.1 | 0.000092 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 10 | 10 | B.1.1 | 0.000181 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 9 | 9 | AY.16.1 | 0.004229 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 9 | 9 | AY.99.2 | 0.000829 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 9 | 9 | B.1.351 | 0.000268 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 9 | 9 | B.1.575 | 0.002731 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 8 | 8 | AY.102 | 0.000212 |
ORF1ab/nsp14A2-B | 374 | S374S | tcT | tcC | 7 | 8 | AY.4 | 0.000011 |
ORF1ab/nsp14A2-B | 374 | S374S | tcT | tcG | 1 | 8 | AY.4 | 0.000002 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 8 | 8 | AY.61 | 0.000838 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 8 | 8 | AY.92 | 0.002298 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 8 | 8 | B.1.408 | 0.02952 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 7 | 7 | AE.8 | 0.003423 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 7 | 7 | AY.29 | 0.00011 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 7 | 7 | AY.33 | 0.000467 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 7 | 7 | AY.49 | 0.022364 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 7 | 7 | AY.84 | 0.003062 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 7 | 7 | B.1.177.7 | 0.001154 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 7 | 7 | B.1.351.3 | 0.006135 |
ORF1ab/nsp14A2-B | 374 | S374T | Tct | Act | 6 | 6 | All | 0.000001 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 6 | 6 | AY.5.4 | 0.00166 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 6 | 6 | AY.59 | 0.003178 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 6 | 6 | AY.68 | 0.001642 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 6 | 6 | AY.77 | 0.006764 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 6 | 6 | AY.9.2 | 0.00022 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 6 | 6 | B | 0.000767 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 6 | 6 | B.1.1.519 | 0.000238 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 5 | 5 | AY.10 | 0.00265 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 5 | 5 | AY.110 | 0.000563 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 5 | 5 | AY.120 | 0.000186 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 5 | 5 | AY.26 | 0.000142 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 5 | 5 | AY.6 | 0.000206 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 5 | 5 | AY.81 | 0.00996 |
ORF1ab/nsp14A2-B | 374 | S374Y | tCt | tAt | 5 | 5 | B.1 | 0.000046 |
ORF1ab/nsp14A2-B | 374 | S374S | tcT | tcA | 2 | 5 | B.1.1 | 0.000036 |
ORF1ab/nsp14A2-B | 374 | S374S | tcT | tcC | 2 | 5 | B.1.1 | 0.000036 |
ORF1ab/nsp14A2-B | 374 | S374S | tcT | tcG | 1 | 5 | B.1.1 | 0.000018 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 5 | 5 | B.1.1.318 | 0.001509 |
ORF1ab/nsp14A2-B | 374 | S374S | tcT | tcC | 5 | 5 | B.1.427 | 0.000252 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 5 | 5 | B.1.429 | 0.000118 |
ORF1ab/nsp14A2-B | 374 | S374S | tcT | tcC | 3 | 5 | B.1.617.2 | 0.000011 |
ORF1ab/nsp14A2-B | 374 | S374S | tcT | tcA | 2 | 5 | B.1.617.2 | 0.000008 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 4 | 4 | AY.23 | 0.000279 |
ORF1ab/nsp14A2-B | 374 | S374S | tcT | tcA | 4 | 4 | AY.3 | 0.00004 |
ORF1ab/nsp14A2-B | 374 | S374A | Tct | Gct | 4 | 4 | AY.3.1 | 0.000341 |
ORF1ab/nsp14A2-B | 374 | S374S | tcT | tcC | 4 | 4 | AY.44 | 0.000024 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 4 | 4 | AY.45 | 0.000487 |
ORF1ab/nsp14A2-B | 374 | S374Y | tCt | tAt | 4 | 4 | AY.5 | 0.000083 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 4 | 4 | AY.50 | 0.003197 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 4 | 4 | AY.55 | 0.00367 |
ORF1ab/nsp14A2-B | 374 | S374S | tcT | tcC | 4 | 4 | AY.90 | 0.002738 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 4 | 4 | B.1.243 | 0.000278 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 4 | 4 | B.1.258 | 0.000266 |
ORF1ab/nsp14A2-B | 374 | S374A | Tct | Gct | 4 | 4 | B.1.456 | 0.013072 |
ORF1ab/nsp14A2-B | 374 | S374I | TCt | ATt | 3 | 3 | All | 0.000001 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 3 | 3 | AY.119 | 0.000106 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 3 | 3 | AY.42 | 0.000121 |
ORF1ab/nsp14A2-B | 374 | S374Y | tCt | tAt | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 3 | 3 | AY.5.3 | 0.001012 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 3 | 3 | AY.66 | 0.003209 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 3 | 3 | AY.85 | 0.001282 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 3 | 3 | AY.86 | 0.00249 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 3 | 3 | AY.87 | 0.002498 |
ORF1ab/nsp14A2-B | 374 | S374S | tcT | tcC | 3 | 3 | B.1.1.174 | 0.010135 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 3 | 3 | B.1.1.222 | 0.000612 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 3 | 3 | B.1.126 | 0.003827 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 3 | 3 | B.1.160.24 | 0.013274 |
ORF1ab/nsp14A2-B | 374 | S374del | TCT | --- | 3 | 3 | B.1.177 | 0.00004 |
ORF1ab/nsp14A2-B | 374 | S374S | tcT | tcC | 3 | 3 | B.1.2 | 0.000026 |
ORF1ab/nsp14A2-B | 374 | S374S | tcT | tcC | 3 | 3 | B.1.221 | 0.000213 |
ORF1ab/nsp14A2-B | 374 | S374S | tcT | tcC | 3 | 3 | B.1.429 | 0.000071 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 3 | 3 | B.1.637 | 0.000219 |
ORF1ab/nsp14A2-B | 374 | S374S | tcT | tcA | 2 | 3 | P.1 | 0.000032 |
ORF1ab/nsp14A2-B | 374 | S374S | tcT | tcC | 1 | 3 | P.1 | 0.000016 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 3 | 3 | R.1 | 0.00027 |
ORF1ab/nsp14A2-B | 374 | S374L | TCT | CTG | 2 | 2 | 0.111111 | |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 2 | 2 | 0.111111 | |
ORF1ab/nsp14A2-B | 374 | S374L | TCT | CTG | 2 | 2 | All | 0 |
ORF1ab/nsp14A2-B | 374 | S374A | Tct | Gct | 2 | 2 | AY.1 | 0.000791 |
ORF1ab/nsp14A2-B | 374 | S374S | tcT | tcC | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 2 | 2 | AY.106 | 0.00067 |
ORF1ab/nsp14A2-B | 374 | S374S | tcT | tcA | 2 | 2 | AY.119 | 0.000071 |
ORF1ab/nsp14A2-B | 374 | S374S | tcT | tcC | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 2 | 2 | AY.121 | 0.000271 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 2 | 2 | AY.24 | 0.000862 |
ORF1ab/nsp14A2-B | 374 | S374A | Tct | Gct | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 2 | 2 | AY.3.1 | 0.000171 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 2 | 2 | AY.30 | 0.000791 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 2 | 2 | AY.34 | 0.000194 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 2 | 2 | AY.36 | 0.000296 |
ORF1ab/nsp14A2-B | 374 | S374S | tcT | tcC | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 2 | 2 | AY.39.1 | 0.000079 |
ORF1ab/nsp14A2-B | 374 | S374P | Tct | Cct | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp14A2-B | 374 | S374del | TCT | --- | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp14A2-B | 374 | S374Y | tCt | tAt | 2 | 2 | AY.4.2 | 0.000043 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 2 | 2 | AY.40 | 0.001929 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 2 | 2 | AY.56 | 0.00321 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 2 | 2 | AY.67 | 0.000929 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 2 | 2 | AY.71 | 0.00095 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 2 | 2 | AY.9 | 0.000135 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 2 | 2 | AY.93 | 0.000546 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 2 | 2 | AY.99.1 | 0.003106 |
ORF1ab/nsp14A2-B | 374 | S374T | Tct | Act | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp14A2-B | 374 | S374I | TCt | ATt | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 2 | 2 | B.1.1.117 | 0.019417 |
ORF1ab/nsp14A2-B | 374 | S374A | Tct | Gct | 2 | 2 | B.1.1.28 | 0.000622 |
ORF1ab/nsp14A2-B | 374 | S374S | tcT | tcA | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp14A2-B | 374 | S374P | Tct | Cct | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp14A2-B | 374 | S374Y | tCt | tAt | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 2 | 2 | B.1.177.10 | 0.001756 |
ORF1ab/nsp14A2-B | 374 | S374A | Tct | Gct | 2 | 2 | B.1.177.82 | 0.000955 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 2 | 2 | B.1.240 | 0.000431 |
ORF1ab/nsp14A2-B | 374 | S374S | tcT | tcA | 2 | 2 | B.1.400 | 0.000858 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 2 | 2 | B.1.582 | 0.000981 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 2 | 2 | B.1.596.1 | 0.018692 |
ORF1ab/nsp14A2-B | 374 | S374Y | tCt | tAt | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp14A2-B | 374 | S374S | tcT | tcG | 2 | 2 | C.36 | 0.001821 |
ORF1ab/nsp14A2-B | 374 | S374S | tcT | tcC | 2 | 2 | C.36.3 | 0.001134 |
ORF1ab/nsp14A2-B | 374 | S374S | tcT | tcC | 1 | 1 | 0.055556 | |
ORF1ab/nsp14A2-B | 374 | S374S | tcT | tcC | 1 | 1 | A | 0.000387 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp14A2-B | 374 | S374del | TCT | --- | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp14A2-B | 374 | S374del1 | tCt | t-t | 1 | 1 | All | 0 |
ORF1ab/nsp14A2-B | 374 | S374C | tCt | tGt | 1 | 1 | All | 0 |
ORF1ab/nsp14A2-B | 374 | S374H | TCt | CAt | 1 | 1 | All | 0 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp14A2-B | 374 | S374P | Tct | Cct | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 1 | 1 | AY.120.2 | 0.001285 |
ORF1ab/nsp14A2-B | 374 | S374S | tcT | tcC | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 1 | 1 | AY.21 | 0.001898 |
ORF1ab/nsp14A2-B | 374 | S374S | tcT | tcC | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp14A2-B | 374 | S374C | tCt | tGt | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp14A2-B | 374 | S374S | tcT | tcC | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp14A2-B | 374 | S374S | tcT | tcA | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp14A2-B | 374 | S374Y | tCt | tAt | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp14A2-B | 374 | S374S | tcT | tcC | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp14A2-B | 374 | S374P | Tct | Cct | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp14A2-B | 374 | S374A | Tct | Gct | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp14A2-B | 374 | S374T | Tct | Act | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp14A2-B | 374 | S374del | TCT | --- | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 1 | 1 | AY.46.3 | 0.000934 |
ORF1ab/nsp14A2-B | 374 | S374del | TCT | --- | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp14A2-B | 374 | S374Y | tCt | tAt | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp14A2-B | 374 | S374S | tcT | tcA | 1 | 1 | AY.66 | 0.00107 |
ORF1ab/nsp14A2-B | 374 | S374del | TCT | --- | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp14A2-B | 374 | S374S | tcT | tcC | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 1 | 1 | AY.72 | 0.001361 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 1 | 1 | AY.73 | 0.000665 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 1 | 1 | AY.8 | 0.000606 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 1 | 1 | AY.90 | 0.000684 |
ORF1ab/nsp14A2-B | 374 | S374A | Tct | Gct | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp14A2-B | 374 | S374Y | tCt | tAt | 1 | 1 | B | 0.000128 |
ORF1ab/nsp14A2-B | 374 | S374P | Tct | Cct | 1 | 1 | B | 0.000128 |
ORF1ab/nsp14A2-B | 374 | S374P | Tct | Cct | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp14A2-B | 374 | S374Y | tCt | tAt | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp14A2-B | 374 | S374Y | tCt | tAt | 1 | 1 | B.1.1.12 | 0.007463 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 1 | 1 | B.1.1.189 | 0.001513 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp14A2-B | 374 | S374P | Tct | Cct | 1 | 1 | B.1.1.243 | 0.004082 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 1 | 1 | B.1.1.258 | 0.003257 |
ORF1ab/nsp14A2-B | 374 | S374del | TCT | --- | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp14A2-B | 374 | S374del | TCT | --- | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp14A2-B | 374 | S374S | tcT | tcC | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 1 | 1 | B.1.1.326 | 0.001761 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 1 | 1 | B.1.1.336 | 0.016667 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 1 | 1 | B.1.1.414 | 0.142857 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 1 | 1 | B.1.1.464 | 0.001473 |
ORF1ab/nsp14A2-B | 374 | S374S | tcT | tcC | 1 | 1 | B.1.1.5 | 0.008333 |
ORF1ab/nsp14A2-B | 374 | S374S | tcT | tcG | 1 | 1 | B.1.1.521 | 0.005348 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 1 | 1 | B.1.1.67 | 0.004566 |
ORF1ab/nsp14A2-B | 374 | S374T | Tct | Act | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp14A2-B | 374 | S374A | Tct | Gct | 1 | 1 | B.1.110.3 | 0.000718 |
ORF1ab/nsp14A2-B | 374 | S374S | tcT | tcC | 1 | 1 | B.1.117 | 0.0125 |
ORF1ab/nsp14A2-B | 374 | S374del1 | tCt | t-t | 1 | 1 | B.1.126 | 0.001276 |
ORF1ab/nsp14A2-B | 374 | S374S | tcT | tcC | 1 | 1 | B.1.146 | 0.004237 |
ORF1ab/nsp14A2-B | 374 | S374T | Tct | Act | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp14A2-B | 374 | S374T | Tct | Act | 1 | 1 | B.1.177.51 | 0.004566 |
ORF1ab/nsp14A2-B | 374 | S374del | TCT | --- | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp14A2-B | 374 | S374S | tcT | tcC | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 1 | 1 | B.1.190 | 0.01 |
ORF1ab/nsp14A2-B | 374 | S374del | TCT | --- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 1 | 1 | B.1.205 | 0.02381 |
ORF1ab/nsp14A2-B | 374 | S374S | tcT | tcC | 1 | 1 | B.1.213 | 0.014925 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 1 | 1 | B.1.214 | 0.003663 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp14A2-B | 374 | S374del | TCT | --- | 1 | 1 | B.1.258.11 | 0.000396 |
ORF1ab/nsp14A2-B | 374 | S374Y | tCt | tAt | 1 | 1 | B.1.301 | 0.005917 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 1 | 1 | B.1.328 | 0.03125 |
ORF1ab/nsp14A2-B | 374 | S374A | Tct | Gct | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp14A2-B | 374 | S374del | TCT | --- | 1 | 1 | B.1.36.1 | 0.00114 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 1 | 1 | B.1.36.16 | 0.001425 |
ORF1ab/nsp14A2-B | 374 | S374P | Tct | Cct | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 1 | 1 | B.1.36.26 | 0.002857 |
ORF1ab/nsp14A2-B | 374 | S374A | Tct | Gct | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp14A2-B | 374 | S374A | Tct | Gct | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp14A2-B | 374 | S374del | TCT | --- | 1 | 1 | B.1.415 | 0.014286 |
ORF1ab/nsp14A2-B | 374 | S374S | tcT | tcA | 1 | 1 | B.1.468 | 0.005714 |
ORF1ab/nsp14A2-B | 374 | S374S | tcT | tcA | 1 | 1 | B.1.470 | 0.001404 |
ORF1ab/nsp14A2-B | 374 | S374S | tcT | tcC | 1 | 1 | B.1.517 | 0.000427 |
ORF1ab/nsp14A2-B | 374 | S374S | tcT | tcC | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp14A2-B | 374 | S374H | TCt | CAt | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp14A2-B | 374 | S374P | Tct | Cct | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp14A2-B | 374 | S374Y | tCt | tAt | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp14A2-B | 374 | S374S | tcT | tcA | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp14A2-B | 374 | S374del | TCT | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp14A2-B | 374 | S374Y | tCt | tAt | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp14A2-B | 374 | S374I | TCt | ATt | 1 | 1 | B.53 | 0.011765 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp14A2-B | 374 | S374Y | tCt | tAt | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp14A2-B | 374 | S374A | Tct | Gct | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp14A2-B | 374 | S374del | TCT | --- | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 1 | 1 | P.2 | 0.000187 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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