CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp14A2-B | 373 | H373Y | H6298Y | nonsyn | Cat | Tat | 1113 | 1113 | 1 | 19156-19158 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp14A2-B | 373 | H373Y | Cat | Tat | 1113 | 1113 | All | 0.000213 |
ORF1ab/nsp14A2-B | 373 | H373Y | Cat | Tat | 348 | 348 | AY.4 | 0.000542 |
ORF1ab/nsp14A2-B | 373 | H373Y | Cat | Tat | 136 | 136 | B.1.1.7 | 0.000122 |
ORF1ab/nsp14A2-B | 373 | H373Y | Cat | Tat | 98 | 98 | AY.3 | 0.000975 |
ORF1ab/nsp14A2-B | 373 | H373Y | Cat | Tat | 60 | 60 | AY.118 | 0.003759 |
ORF1ab/nsp14A2-B | 373 | H373Y | Cat | Tat | 39 | 39 | B.1.2 | 0.000343 |
ORF1ab/nsp14A2-B | 373 | H373Y | Cat | Tat | 34 | 34 | B.1.429 | 0.0008 |
ORF1ab/nsp14A2-B | 373 | H373Y | Cat | Tat | 27 | 27 | AY.103 | 0.000168 |
ORF1ab/nsp14A2-B | 373 | H373Y | Cat | Tat | 24 | 24 | AY.43 | 0.000106 |
ORF1ab/nsp14A2-B | 373 | H373Y | Cat | Tat | 24 | 24 | Q.1 | 0.003032 |
ORF1ab/nsp14A2-B | 373 | H373Y | Cat | Tat | 23 | 23 | AY.44 | 0.00014 |
ORF1ab/nsp14A2-B | 373 | H373Y | Cat | Tat | 21 | 21 | B.1.617.2 | 0.000079 |
ORF1ab/nsp14A2-B | 373 | H373Y | Cat | Tat | 18 | 18 | B.1.177.62 | 0.021454 |
ORF1ab/nsp14A2-B | 373 | H373Y | Cat | Tat | 18 | 18 | P.1 | 0.000284 |
ORF1ab/nsp14A2-B | 373 | H373Y | Cat | Tat | 14 | 14 | B.1.177 | 0.000184 |
ORF1ab/nsp14A2-B | 373 | H373Y | Cat | Tat | 11 | 11 | AY.25 | 0.000066 |
ORF1ab/nsp14A2-B | 373 | H373Y | Cat | Tat | 11 | 11 | P.1.17 | 0.001779 |
ORF1ab/nsp14A2-B | 373 | H373Y | Cat | Tat | 10 | 10 | AY.5 | 0.000206 |
ORF1ab/nsp14A2-B | 373 | H373Y | Cat | Tat | 9 | 9 | AW.1 | 0.027439 |
ORF1ab/nsp14A2-B | 373 | H373Y | Cat | Tat | 9 | 9 | B.1 | 0.000082 |
ORF1ab/nsp14A2-B | 373 | H373Y | Cat | Tat | 9 | 9 | B.1.561 | 0.003573 |
ORF1ab/nsp14A2-B | 373 | H373Y | Cat | Tat | 8 | 8 | B.1.1.519 | 0.000318 |
ORF1ab/nsp14A2-B | 373 | H373Y | Cat | Tat | 7 | 7 | B.1.1.232 | 0.012704 |
ORF1ab/nsp14A2-B | 373 | H373Y | Cat | Tat | 7 | 7 | B.1.526 | 0.000165 |
ORF1ab/nsp14A2-B | 373 | H373Y | Cat | Tat | 6 | 6 | B.1.258 | 0.000399 |
ORF1ab/nsp14A2-B | 373 | H373Y | Cat | Tat | 6 | 6 | Q.3 | 0.00087 |
ORF1ab/nsp14A2-B | 373 | H373Y | Cat | Tat | 5 | 5 | AY.4.2 | 0.000108 |
ORF1ab/nsp14A2-B | 373 | H373Y | Cat | Tat | 5 | 5 | B.1.1.63 | 0.001929 |
ORF1ab/nsp14A2-B | 373 | H373Y | Cat | Tat | 4 | 4 | AY.102 | 0.000106 |
ORF1ab/nsp14A2-B | 373 | H373Y | Cat | Tat | 4 | 4 | AY.26 | 0.000113 |
ORF1ab/nsp14A2-B | 373 | H373Y | Cat | Tat | 4 | 4 | AY.61 | 0.000419 |
ORF1ab/nsp14A2-B | 373 | H373Y | Cat | Tat | 4 | 4 | B.1.609 | 0.001918 |
ORF1ab/nsp14A2-B | 373 | H373Y | Cat | Tat | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp14A2-B | 373 | H373Y | Cat | Tat | 3 | 3 | B.1.177.44 | 0.001557 |
ORF1ab/nsp14A2-B | 373 | H373Y | Cat | Tat | 3 | 3 | B.1.177.7 | 0.000495 |
ORF1ab/nsp14A2-B | 373 | H373Y | Cat | Tat | 3 | 3 | B.1.221 | 0.000213 |
ORF1ab/nsp14A2-B | 373 | H373Y | Cat | Tat | 3 | 3 | B.1.311 | 0.000824 |
ORF1ab/nsp14A2-B | 373 | H373Y | Cat | Tat | 3 | 3 | B.1.36.10 | 0.014354 |
ORF1ab/nsp14A2-B | 373 | H373Y | Cat | Tat | 3 | 3 | B.1.36.17 | 0.001482 |
ORF1ab/nsp14A2-B | 373 | H373Y | Cat | Tat | 3 | 3 | B.1.438.1 | 0.000322 |
ORF1ab/nsp14A2-B | 373 | H373Y | Cat | Tat | 3 | 3 | B.1.616 | 0.073171 |
ORF1ab/nsp14A2-B | 373 | H373Y | Cat | Tat | 2 | 2 | AY.14 | 0.000176 |
ORF1ab/nsp14A2-B | 373 | H373Y | Cat | Tat | 2 | 2 | AY.20 | 0.000078 |
ORF1ab/nsp14A2-B | 373 | H373Y | Cat | Tat | 2 | 2 | AY.29 | 0.000032 |
ORF1ab/nsp14A2-B | 373 | H373Y | Cat | Tat | 2 | 2 | AY.42 | 0.00008 |
ORF1ab/nsp14A2-B | 373 | H373Y | Cat | Tat | 2 | 2 | B.1.1.317 | 0.000823 |
ORF1ab/nsp14A2-B | 373 | H373Y | Cat | Tat | 2 | 2 | B.1.1.33 | 0.000842 |
ORF1ab/nsp14A2-B | 373 | H373Y | Cat | Tat | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp14A2-B | 373 | H373Y | Cat | Tat | 2 | 2 | B.1.568 | 0.002222 |
ORF1ab/nsp14A2-B | 373 | H373Y | Cat | Tat | 2 | 2 | B.1.637 | 0.000146 |
ORF1ab/nsp14A2-B | 373 | H373Y | Cat | Tat | 2 | 2 | C.37 | 0.000232 |
ORF1ab/nsp14A2-B | 373 | H373Y | Cat | Tat | 2 | 2 | P.1.16 | 0.000748 |
ORF1ab/nsp14A2-B | 373 | H373Y | Cat | Tat | 1 | 1 | 0.055556 | |
ORF1ab/nsp14A2-B | 373 | H373Y | Cat | Tat | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp14A2-B | 373 | H373Y | Cat | Tat | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp14A2-B | 373 | H373Y | Cat | Tat | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp14A2-B | 373 | H373Y | Cat | Tat | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp14A2-B | 373 | H373Y | Cat | Tat | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp14A2-B | 373 | H373Y | Cat | Tat | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp14A2-B | 373 | H373Y | Cat | Tat | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp14A2-B | 373 | H373Y | Cat | Tat | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp14A2-B | 373 | H373Y | Cat | Tat | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp14A2-B | 373 | H373Y | Cat | Tat | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp14A2-B | 373 | H373Y | Cat | Tat | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp14A2-B | 373 | H373Y | Cat | Tat | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp14A2-B | 373 | H373Y | Cat | Tat | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp14A2-B | 373 | H373Y | Cat | Tat | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp14A2-B | 373 | H373Y | Cat | Tat | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp14A2-B | 373 | H373Y | Cat | Tat | 1 | 1 | AY.72 | 0.001361 |
ORF1ab/nsp14A2-B | 373 | H373Y | Cat | Tat | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp14A2-B | 373 | H373Y | Cat | Tat | 1 | 1 | B | 0.000128 |
ORF1ab/nsp14A2-B | 373 | H373Y | Cat | Tat | 1 | 1 | B.1.1.170 | 0.001247 |
ORF1ab/nsp14A2-B | 373 | H373Y | Cat | Tat | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp14A2-B | 373 | H373Y | Cat | Tat | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp14A2-B | 373 | H373Y | Cat | Tat | 1 | 1 | B.1.1.301 | 0.001179 |
ORF1ab/nsp14A2-B | 373 | H373Y | Cat | Tat | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp14A2-B | 373 | H373Y | Cat | Tat | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp14A2-B | 373 | H373Y | Cat | Tat | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp14A2-B | 373 | H373Y | Cat | Tat | 1 | 1 | B.1.1.397 | 0.002252 |
ORF1ab/nsp14A2-B | 373 | H373Y | Cat | Tat | 1 | 1 | B.1.1.448 | 0.002033 |
ORF1ab/nsp14A2-B | 373 | H373Y | Cat | Tat | 1 | 1 | B.1.1.507 | 0.008696 |
ORF1ab/nsp14A2-B | 373 | H373Y | Cat | Tat | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp14A2-B | 373 | H373Y | Cat | Tat | 1 | 1 | B.1.177.5 | 0.001242 |
ORF1ab/nsp14A2-B | 373 | H373Y | Cat | Tat | 1 | 1 | B.1.177.56 | 0.000668 |
ORF1ab/nsp14A2-B | 373 | H373Y | Cat | Tat | 1 | 1 | B.1.177.82 | 0.000477 |
ORF1ab/nsp14A2-B | 373 | H373Y | Cat | Tat | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp14A2-B | 373 | H373Y | Cat | Tat | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp14A2-B | 373 | H373Y | Cat | Tat | 1 | 1 | B.1.260 | 0.003344 |
ORF1ab/nsp14A2-B | 373 | H373Y | Cat | Tat | 1 | 1 | B.1.298 | 0.002114 |
ORF1ab/nsp14A2-B | 373 | H373Y | Cat | Tat | 1 | 1 | B.1.319 | 0.003049 |
ORF1ab/nsp14A2-B | 373 | H373Y | Cat | Tat | 1 | 1 | B.1.349 | 0.000715 |
ORF1ab/nsp14A2-B | 373 | H373Y | Cat | Tat | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp14A2-B | 373 | H373Y | Cat | Tat | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp14A2-B | 373 | H373Y | Cat | Tat | 1 | 1 | B.1.361 | 0.001289 |
ORF1ab/nsp14A2-B | 373 | H373Y | Cat | Tat | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp14A2-B | 373 | H373Y | Cat | Tat | 1 | 1 | B.1.426 | 0.001009 |
ORF1ab/nsp14A2-B | 373 | H373Y | Cat | Tat | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp14A2-B | 373 | H373Y | Cat | Tat | 1 | 1 | B.1.575 | 0.000303 |
ORF1ab/nsp14A2-B | 373 | H373Y | Cat | Tat | 1 | 1 | B.1.588 | 0.00091 |
ORF1ab/nsp14A2-B | 373 | H373Y | Cat | Tat | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp14A2-B | 373 | H373Y | Cat | Tat | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp14A2-B | 373 | H373Y | Cat | Tat | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp14A2-B | 373 | H373Y | Cat | Tat | 1 | 1 | B.1.84 | 0.020833 |
ORF1ab/nsp14A2-B | 373 | H373Y | Cat | Tat | 1 | 1 | C.16 | 0.00106 |
ORF1ab/nsp14A2-B | 373 | H373Y | Cat | Tat | 1 | 1 | C.27 | 0.018519 |
ORF1ab/nsp14A2-B | 373 | H373Y | Cat | Tat | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp14A2-B | 373 | H373Y | Cat | Tat | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp14A2-B | 373 | H373Y | Cat | Tat | 1 | 1 | N.3 | 0.005814 |
ORF1ab/nsp14A2-B | 373 | H373Y | Cat | Tat | 1 | 1 | N.5 | 0.001767 |
ORF1ab/nsp14A2-B | 373 | H373Y | Cat | Tat | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp14A2-B | 373 | H373Y | Cat | Tat | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp14A2-B | 373 | H373Y | Cat | Tat | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp14A2-B | 373 | H373Y | Cat | Tat | 1 | 1 | U.3 | 0.003861 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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