CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp14A2-B : CodonNum = 373

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp14A2-B373H373YH6298YnonsynCatTat11131113119156-19158
ORF1ab/nsp14A2-B373H373HH6298HsyncaTcaC665665119156-19158
ORF1ab/nsp14A2-B373H373NH6298NnonsynCatAat6666119156-19158
ORF1ab/nsp14A2-B373H373delH6298deldelCAT---3939119156-19158
ORF1ab/nsp14A2-B373H373QH6298QnonsyncaTcaG28210.7519156-19158
ORF1ab/nsp14A2-B373H373QH6298QnonsyncaTcaA2870.2519156-19158
ORF1ab/nsp14A2-B373H373RH6298RnonsyncAtcGt1111119156-19158
ORF1ab/nsp14A2-B373H373LH6298LnonsyncAtcTt88119156-19158
ORF1ab/nsp14A2-B373H373DH6298DnonsynCatGat77119156-19158
ORF1ab/nsp14A2-B373H373del1H6298del1delcaTca-650.83333319156-19158
ORF1ab/nsp14A2-B373H373del1H6298del1delcAtc-t610.16666719156-19158
ORF1ab/nsp14A2-B373H373FH6298FnonsynCAtTTt11119156-19158
ORF1ab/nsp14A2-B373H373del2H6298del2delcATc--11119156-19158
ORF1ab/nsp14A2-B373H373AH6298AnonsynCAtGCt11119156-19158
ORF1ab/nsp14A2-B373H373PH6298PnonsyncAtcCt11119156-19158

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp14A2-B373H373YCatTat11131113All0.000213
ORF1ab/nsp14A2-B373H373HcaTcaC665665All0.000127
ORF1ab/nsp14A2-B373H373YCatTat348348AY.40.000542
ORF1ab/nsp14A2-B373H373HcaTcaC177177B.1.20.001559
ORF1ab/nsp14A2-B373H373YCatTat136136B.1.1.70.000122
ORF1ab/nsp14A2-B373H373HcaTcaC136136B.1.617.20.000512
ORF1ab/nsp14A2-B373H373YCatTat9898AY.30.000975
ORF1ab/nsp14A2-B373H373HcaTcaC8787C.230.505814
ORF1ab/nsp14A2-B373H373HcaTcaC7777B.1.1.70.000069
ORF1ab/nsp14A2-B373H373NCatAat6666All0.000013
ORF1ab/nsp14A2-B373H373YCatTat6060AY.1180.003759
ORF1ab/nsp14A2-B373H373NCatAat4646AY.40.000072
ORF1ab/nsp14A2-B373H373delCAT---3939All0.000007
ORF1ab/nsp14A2-B373H373YCatTat3939B.1.20.000343
ORF1ab/nsp14A2-B373H373HcaTcaC3737AY.250.000223
ORF1ab/nsp14A2-B373H373YCatTat3434B.1.4290.0008
ORF1ab/nsp14A2-B373H373QcaTcaG2128All0.000004
ORF1ab/nsp14A2-B373H373QcaTcaA728All0.000001
ORF1ab/nsp14A2-B373H373YCatTat2727AY.1030.000168
ORF1ab/nsp14A2-B373H373YCatTat2424AY.430.000106
ORF1ab/nsp14A2-B373H373YCatTat2424Q.10.003032
ORF1ab/nsp14A2-B373H373YCatTat2323AY.440.00014
ORF1ab/nsp14A2-B373H373delCAT---2222B.1.1.70.00002
ORF1ab/nsp14A2-B373H373YCatTat2121B.1.617.20.000079
ORF1ab/nsp14A2-B373H373HcaTcaC1818AY.540.001716
ORF1ab/nsp14A2-B373H373YCatTat1818B.1.177.620.021454
ORF1ab/nsp14A2-B373H373YCatTat1818P.10.000284
ORF1ab/nsp14A2-B373H373HcaTcaC1717AY.1020.000451
ORF1ab/nsp14A2-B373H373YCatTat1414B.1.1770.000184
ORF1ab/nsp14A2-B373H373QcaTcaG1212B.1.1.70.000011
ORF1ab/nsp14A2-B373H373RcAtcGt1111All0.000002
ORF1ab/nsp14A2-B373H373YCatTat1111AY.250.000066
ORF1ab/nsp14A2-B373H373YCatTat1111P.1.170.001779
ORF1ab/nsp14A2-B373H373YCatTat1010AY.50.000206
ORF1ab/nsp14A2-B373H373HcaTcaC99A.280.02381
ORF1ab/nsp14A2-B373H373YCatTat99AW.10.027439
ORF1ab/nsp14A2-B373H373NCatAat99AY.1030.000056
ORF1ab/nsp14A2-B373H373YCatTat99B.10.000082
ORF1ab/nsp14A2-B373H373YCatTat99B.1.5610.003573
ORF1ab/nsp14A2-B373H373LcAtcTt88All0.000002
ORF1ab/nsp14A2-B373H373HcaTcaC88AY.1030.00005
ORF1ab/nsp14A2-B373H373HcaTcaC88AY.40.000012
ORF1ab/nsp14A2-B373H373YCatTat88B.1.1.5190.000318
ORF1ab/nsp14A2-B373H373DCatGat77All0.000001
ORF1ab/nsp14A2-B373H373HcaTcaC77AY.4.20.000152
ORF1ab/nsp14A2-B373H373YCatTat77B.1.1.2320.012704
ORF1ab/nsp14A2-B373H373YCatTat77B.1.5260.000165
ORF1ab/nsp14A2-B373H373del1caTca-56All0.000001
ORF1ab/nsp14A2-B373H373del1cAtc-t16All0
ORF1ab/nsp14A2-B373H373HcaTcaC66AY.1190.000212
ORF1ab/nsp14A2-B373H373YCatTat66B.1.2580.000399
ORF1ab/nsp14A2-B373H373NCatAat66B.1.617.20.000023
ORF1ab/nsp14A2-B373H373YCatTat66Q.30.00087
ORF1ab/nsp14A2-B373H373YCatTat55AY.4.20.000108
ORF1ab/nsp14A2-B373H373HcaTcaC55AY.430.000022
ORF1ab/nsp14A2-B373H373HcaTcaC55B.1.1.10.001633
ORF1ab/nsp14A2-B373H373YCatTat55B.1.1.630.001929
ORF1ab/nsp14A2-B373H373HcaTcaC55B.1.1770.000066
ORF1ab/nsp14A2-B373H373YCatTat44AY.1020.000106
ORF1ab/nsp14A2-B373H373YCatTat44AY.260.000113
ORF1ab/nsp14A2-B373H373HcaTcaC44AY.39.10.000158
ORF1ab/nsp14A2-B373H373HcaTcaC44AY.440.000024
ORF1ab/nsp14A2-B373H373YCatTat44AY.610.000419
ORF1ab/nsp14A2-B373H373QcaTcaG44B.1.1.5190.000159
ORF1ab/nsp14A2-B373H373HcaTcaC44B.1.5700.011765
ORF1ab/nsp14A2-B373H373YCatTat44B.1.6090.001918
ORF1ab/nsp14A2-B373H373RcAtcGt44B.1.617.20.000015
ORF1ab/nsp14A2-B373H373HcaTcaC44C.36.30.002269
ORF1ab/nsp14A2-B373H373HcaTcaC44C.370.000464
ORF1ab/nsp14A2-B373H373HcaTcaC33AY.30.00003
ORF1ab/nsp14A2-B373H373HcaTcaC33AY.390.000074
ORF1ab/nsp14A2-B373H373RcAtcGt33AY.40.000005
ORF1ab/nsp14A2-B373H373HcaTcaC33B.10.000027
ORF1ab/nsp14A2-B373H373del1caTca-23B.10.000018
ORF1ab/nsp14A2-B373H373del1cAtc-t13B.10.000009
ORF1ab/nsp14A2-B373H373YCatTat33B.1.10.000054
ORF1ab/nsp14A2-B373H373delCAT---33B.1.1770.00004
ORF1ab/nsp14A2-B373H373YCatTat33B.1.177.440.001557
ORF1ab/nsp14A2-B373H373YCatTat33B.1.177.70.000495
ORF1ab/nsp14A2-B373H373YCatTat33B.1.2210.000213
ORF1ab/nsp14A2-B373H373YCatTat33B.1.3110.000824
ORF1ab/nsp14A2-B373H373YCatTat33B.1.36.100.014354
ORF1ab/nsp14A2-B373H373YCatTat33B.1.36.170.001482
ORF1ab/nsp14A2-B373H373YCatTat33B.1.438.10.000322
ORF1ab/nsp14A2-B373H373YCatTat33B.1.6160.073171
ORF1ab/nsp14A2-B373H373NCatAat220.111111
ORF1ab/nsp14A2-B373H373YCatTat22AY.140.000176
ORF1ab/nsp14A2-B373H373YCatTat22AY.200.000078
ORF1ab/nsp14A2-B373H373YCatTat22AY.290.000032
ORF1ab/nsp14A2-B373H373QcaTcaA22AY.390.000049
ORF1ab/nsp14A2-B373H373delCAT---22AY.40.000003
ORF1ab/nsp14A2-B373H373HcaTcaC22AY.4.50.000215
ORF1ab/nsp14A2-B373H373YCatTat22AY.420.00008
ORF1ab/nsp14A2-B373H373NCatAat22AY.430.000009
ORF1ab/nsp14A2-B373H373HcaTcaC22AY.550.001835
ORF1ab/nsp14A2-B373H373YCatTat22B.1.1.3170.000823
ORF1ab/nsp14A2-B373H373YCatTat22B.1.1.330.000842
ORF1ab/nsp14A2-B373H373DCatGat22B.1.1.70.000002
ORF1ab/nsp14A2-B373H373RcAtcGt22B.1.1.70.000002
ORF1ab/nsp14A2-B373H373LcAtcTt22B.1.1.70.000002
ORF1ab/nsp14A2-B373H373YCatTat22B.1.1600.000062
ORF1ab/nsp14A2-B373H373HcaTcaC22B.1.2430.000139
ORF1ab/nsp14A2-B373H373HcaTcaC22B.1.360.000292
ORF1ab/nsp14A2-B373H373YCatTat22B.1.5680.002222
ORF1ab/nsp14A2-B373H373HcaTcaC22B.1.5960.000174
ORF1ab/nsp14A2-B373H373del1caTca-22B.1.6270.00404
ORF1ab/nsp14A2-B373H373YCatTat22B.1.6370.000146
ORF1ab/nsp14A2-B373H373YCatTat22C.370.000232
ORF1ab/nsp14A2-B373H373HcaTcaC22P.10.000032
ORF1ab/nsp14A2-B373H373YCatTat22P.1.160.000748
ORF1ab/nsp14A2-B373H373YCatTat110.055556
ORF1ab/nsp14A2-B373H373QcaTcaA110.055556
ORF1ab/nsp14A2-B373H373HcaTcaC11A.23.10.000704
ORF1ab/nsp14A2-B373H373delCAT---11AD.20.000219
ORF1ab/nsp14A2-B373H373FCAtTTt11All0
ORF1ab/nsp14A2-B373H373ACAtGCt11All0
ORF1ab/nsp14A2-B373H373PcAtcCt11All0
ORF1ab/nsp14A2-B373H373del2cATc--11All0
ORF1ab/nsp14A2-B373H373HcaTcaC11AY.1000.000046
ORF1ab/nsp14A2-B373H373QcaTcaG11AY.1020.000027
ORF1ab/nsp14A2-B373H373QcaTcaG11AY.1030.000006
ORF1ab/nsp14A2-B373H373HcaTcaC11AY.1050.000643
ORF1ab/nsp14A2-B373H373YCatTat11AY.1100.000113
ORF1ab/nsp14A2-B373H373YCatTat11AY.1170.000085
ORF1ab/nsp14A2-B373H373HcaTcaC11AY.1170.000085
ORF1ab/nsp14A2-B373H373YCatTat11AY.1190.000035
ORF1ab/nsp14A2-B373H373HcaTcaC11AY.1210.000135
ORF1ab/nsp14A2-B373H373RcAtcGt11AY.16.10.00047
ORF1ab/nsp14A2-B373H373HcaTcaC11AY.210.001898
ORF1ab/nsp14A2-B373H373QcaTcaA11AY.250.000006
ORF1ab/nsp14A2-B373H373del1caTca-11AY.250.000006
ORF1ab/nsp14A2-B373H373YCatTat11AY.270.000065
ORF1ab/nsp14A2-B373H373YCatTat11AY.300.000396
ORF1ab/nsp14A2-B373H373YCatTat11AY.350.000233
ORF1ab/nsp14A2-B373H373YCatTat11AY.39.10.00004
ORF1ab/nsp14A2-B373H373DCatGat11AY.4.20.000022
ORF1ab/nsp14A2-B373H373YCatTat11AY.4.50.000107
ORF1ab/nsp14A2-B373H373LcAtcTt11AY.440.000006
ORF1ab/nsp14A2-B373H373HcaTcaC11AY.450.000122
ORF1ab/nsp14A2-B373H373YCatTat11AY.450.000122
ORF1ab/nsp14A2-B373H373YCatTat11AY.460.000104
ORF1ab/nsp14A2-B373H373delCAT---11AY.46.20.000635
ORF1ab/nsp14A2-B373H373YCatTat11AY.470.000031
ORF1ab/nsp14A2-B373H373HcaTcaC11AY.470.000031
ORF1ab/nsp14A2-B373H373QcaTcaG11AY.470.000031
ORF1ab/nsp14A2-B373H373HcaTcaC11AY.50.000021
ORF1ab/nsp14A2-B373H373delCAT---11AY.50.000021
ORF1ab/nsp14A2-B373H373DCatGat11AY.50.000021
ORF1ab/nsp14A2-B373H373YCatTat11AY.5.30.000337
ORF1ab/nsp14A2-B373H373YCatTat11AY.590.00053
ORF1ab/nsp14A2-B373H373YCatTat11AY.60.000041
ORF1ab/nsp14A2-B373H373delCAT---11AY.670.000464
ORF1ab/nsp14A2-B373H373HcaTcaC11AY.70.000196
ORF1ab/nsp14A2-B373H373YCatTat11AY.70.000196
ORF1ab/nsp14A2-B373H373HcaTcaC11AY.720.001361
ORF1ab/nsp14A2-B373H373YCatTat11AY.720.001361
ORF1ab/nsp14A2-B373H373HcaTcaC11AY.750.000056
ORF1ab/nsp14A2-B373H373HcaTcaC11AY.840.000437
ORF1ab/nsp14A2-B373H373YCatTat11AY.90.000068
ORF1ab/nsp14A2-B373H373HcaTcaC11AY.930.000273
ORF1ab/nsp14A2-B373H373HcaTcaC11AY.98.10.000048
ORF1ab/nsp14A2-B373H373YCatTat11B0.000128
ORF1ab/nsp14A2-B373H373QcaTcaG11B.10.000009
ORF1ab/nsp14A2-B373H373LcAtcTt11B.10.000009
ORF1ab/nsp14A2-B373H373YCatTat11B.1.1.1700.001247
ORF1ab/nsp14A2-B373H373YCatTat11B.1.1.2160.00089
ORF1ab/nsp14A2-B373H373LcAtcTt11B.1.1.2220.000204
ORF1ab/nsp14A2-B373H373YCatTat11B.1.1.280.000311
ORF1ab/nsp14A2-B373H373YCatTat11B.1.1.3010.001179
ORF1ab/nsp14A2-B373H373delCAT---11B.1.1.3060.000438
ORF1ab/nsp14A2-B373H373YCatTat11B.1.1.3060.000438
ORF1ab/nsp14A2-B373H373delCAT---11B.1.1.3110.000358
ORF1ab/nsp14A2-B373H373YCatTat11B.1.1.3480.000796
ORF1ab/nsp14A2-B373H373YCatTat11B.1.1.370.000193
ORF1ab/nsp14A2-B373H373YCatTat11B.1.1.3970.002252
ORF1ab/nsp14A2-B373H373YCatTat11B.1.1.4480.002033
ORF1ab/nsp14A2-B373H373YCatTat11B.1.1.5070.008696
ORF1ab/nsp14A2-B373H373HcaTcaC11B.1.1.5190.00004
ORF1ab/nsp14A2-B373H373del2cATc--11B.1.1.70.000001
ORF1ab/nsp14A2-B373H373HcaTcaC11B.1.1600.000031
ORF1ab/nsp14A2-B373H373YCatTat11B.1.177.160.000664
ORF1ab/nsp14A2-B373H373YCatTat11B.1.177.50.001242
ORF1ab/nsp14A2-B373H373YCatTat11B.1.177.560.000668
ORF1ab/nsp14A2-B373H373delCAT---11B.1.177.60.000977
ORF1ab/nsp14A2-B373H373HcaTcaC11B.1.177.810.000189
ORF1ab/nsp14A2-B373H373YCatTat11B.1.177.820.000477
ORF1ab/nsp14A2-B373H373delCAT---11B.1.20.000009
ORF1ab/nsp14A2-B373H373YCatTat11B.1.2340.000132
ORF1ab/nsp14A2-B373H373delCAT---11B.1.258.110.000396
ORF1ab/nsp14A2-B373H373YCatTat11B.1.258.170.000104
ORF1ab/nsp14A2-B373H373YCatTat11B.1.2600.003344
ORF1ab/nsp14A2-B373H373YCatTat11B.1.2980.002114
ORF1ab/nsp14A2-B373H373YCatTat11B.1.3190.003049
ORF1ab/nsp14A2-B373H373RcAtcGt11B.1.3340.018182
ORF1ab/nsp14A2-B373H373HcaTcaC11B.1.3460.001311
ORF1ab/nsp14A2-B373H373YCatTat11B.1.3490.000715
ORF1ab/nsp14A2-B373H373PcAtcCt11B.1.3510.00003
ORF1ab/nsp14A2-B373H373DCatGat11B.1.3510.00003
ORF1ab/nsp14A2-B373H373ACAtGCt11B.1.3510.00003
ORF1ab/nsp14A2-B373H373LcAtcTt11B.1.351.20.000303
ORF1ab/nsp14A2-B373H373QcaTcaA11B.1.36.10.00114
ORF1ab/nsp14A2-B373H373YCatTat11B.1.36.180.00042
ORF1ab/nsp14A2-B373H373YCatTat11B.1.36.290.000517
ORF1ab/nsp14A2-B373H373YCatTat11B.1.3610.001289
ORF1ab/nsp14A2-B373H373YCatTat11B.1.3690.000285
ORF1ab/nsp14A2-B373H373NCatAat11B.1.3690.000285
ORF1ab/nsp14A2-B373H373delCAT---11B.1.4150.014286
ORF1ab/nsp14A2-B373H373YCatTat11B.1.4260.001009
ORF1ab/nsp14A2-B373H373YCatTat11B.1.5250.000113
ORF1ab/nsp14A2-B373H373FCAtTTt11B.1.5610.000397
ORF1ab/nsp14A2-B373H373YCatTat11B.1.5750.000303
ORF1ab/nsp14A2-B373H373YCatTat11B.1.5880.00091
ORF1ab/nsp14A2-B373H373LcAtcTt11B.1.5960.000087
ORF1ab/nsp14A2-B373H373YCatTat11B.1.5960.000087
ORF1ab/nsp14A2-B373H373delCAT---11B.1.617.20.000004
ORF1ab/nsp14A2-B373H373QcaTcaA11B.1.617.20.000004
ORF1ab/nsp14A2-B373H373DCatGat11B.1.617.20.000004
ORF1ab/nsp14A2-B373H373YCatTat11B.1.6210.000089
ORF1ab/nsp14A2-B373H373HcaTcaC11B.1.6210.000089
ORF1ab/nsp14A2-B373H373DCatGat11B.1.6230.000536
ORF1ab/nsp14A2-B373H373YCatTat11B.1.6280.000352
ORF1ab/nsp14A2-B373H373YCatTat11B.1.840.020833
ORF1ab/nsp14A2-B373H373HcaTcaC11B.30.000831
ORF1ab/nsp14A2-B373H373QcaTcaA11B.530.011765
ORF1ab/nsp14A2-B373H373YCatTat11C.160.00106
ORF1ab/nsp14A2-B373H373YCatTat11C.270.018519
ORF1ab/nsp14A2-B373H373YCatTat11C.360.000911
ORF1ab/nsp14A2-B373H373LcAtcTt11D.20.000075
ORF1ab/nsp14A2-B373H373YCatTat11D.20.000075
ORF1ab/nsp14A2-B373H373YCatTat11N.30.005814
ORF1ab/nsp14A2-B373H373YCatTat11N.50.001767
ORF1ab/nsp14A2-B373H373delCAT---11P.1.10.000318
ORF1ab/nsp14A2-B373H373YCatTat11P.1.10.000318
ORF1ab/nsp14A2-B373H373YCatTat11P.1.120.000484
ORF1ab/nsp14A2-B373H373HcaTcaC11P.1.150.000232
ORF1ab/nsp14A2-B373H373YCatTat11P.1.150.000232
ORF1ab/nsp14A2-B373H373QcaTcaG11Q.80.000165
ORF1ab/nsp14A2-B373H373YCatTat11U.30.003861