CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp14A2-B : CodonNum = 373

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF1ab/nsp14A2-B	373	H373Y	H6298Y	nonsyn	Cat	Tat	1113	1113	1	19156-19158
ORF1ab/nsp14A2-B	373	H373H	H6298H	syn	caT	caC	665	665	1	19156-19158
ORF1ab/nsp14A2-B	373	H373N	H6298N	nonsyn	Cat	Aat	66	66	1	19156-19158
ORF1ab/nsp14A2-B	373	H373del	H6298del	del	CAT	---	39	39	1	19156-19158
ORF1ab/nsp14A2-B	373	H373Q	H6298Q	nonsyn	caT	caG	28	21	0.75	19156-19158
ORF1ab/nsp14A2-B	373	H373Q	H6298Q	nonsyn	caT	caA	28	7	0.25	19156-19158
ORF1ab/nsp14A2-B	373	H373R	H6298R	nonsyn	cAt	cGt	11	11	1	19156-19158
ORF1ab/nsp14A2-B	373	H373L	H6298L	nonsyn	cAt	cTt	8	8	1	19156-19158
ORF1ab/nsp14A2-B	373	H373D	H6298D	nonsyn	Cat	Gat	7	7	1	19156-19158
ORF1ab/nsp14A2-B	373	H373del1	H6298del1	del	caT	ca-	6	5	0.833333	19156-19158
ORF1ab/nsp14A2-B	373	H373del1	H6298del1	del	cAt	c-t	6	1	0.166667	19156-19158
ORF1ab/nsp14A2-B	373	H373F	H6298F	nonsyn	CAt	TTt	1	1	1	19156-19158
ORF1ab/nsp14A2-B	373	H373del2	H6298del2	del	cAT	c--	1	1	1	19156-19158
ORF1ab/nsp14A2-B	373	H373A	H6298A	nonsyn	CAt	GCt	1	1	1	19156-19158
ORF1ab/nsp14A2-B	373	H373P	H6298P	nonsyn	cAt	cCt	1	1	1	19156-19158

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF1ab/nsp14A2-B	373	H373Y	Cat	Tat	1113	1113	All	0.000213
ORF1ab/nsp14A2-B	373	H373H	caT	caC	665	665	All	0.000127
ORF1ab/nsp14A2-B	373	H373Y	Cat	Tat	348	348	AY.4	0.000542
ORF1ab/nsp14A2-B	373	H373H	caT	caC	177	177	B.1.2	0.001559
ORF1ab/nsp14A2-B	373	H373Y	Cat	Tat	136	136	B.1.1.7	0.000122
ORF1ab/nsp14A2-B	373	H373H	caT	caC	136	136	B.1.617.2	0.000512
ORF1ab/nsp14A2-B	373	H373Y	Cat	Tat	98	98	AY.3	0.000975
ORF1ab/nsp14A2-B	373	H373H	caT	caC	87	87	C.23	0.505814
ORF1ab/nsp14A2-B	373	H373H	caT	caC	77	77	B.1.1.7	0.000069
ORF1ab/nsp14A2-B	373	H373N	Cat	Aat	66	66	All	0.000013
ORF1ab/nsp14A2-B	373	H373Y	Cat	Tat	60	60	AY.118	0.003759
ORF1ab/nsp14A2-B	373	H373N	Cat	Aat	46	46	AY.4	0.000072
ORF1ab/nsp14A2-B	373	H373del	CAT	---	39	39	All	0.000007
ORF1ab/nsp14A2-B	373	H373Y	Cat	Tat	39	39	B.1.2	0.000343
ORF1ab/nsp14A2-B	373	H373H	caT	caC	37	37	AY.25	0.000223
ORF1ab/nsp14A2-B	373	H373Y	Cat	Tat	34	34	B.1.429	0.0008
ORF1ab/nsp14A2-B	373	H373Q	caT	caG	21	28	All	0.000004
ORF1ab/nsp14A2-B	373	H373Q	caT	caA	7	28	All	0.000001
ORF1ab/nsp14A2-B	373	H373Y	Cat	Tat	27	27	AY.103	0.000168
ORF1ab/nsp14A2-B	373	H373Y	Cat	Tat	24	24	AY.43	0.000106
ORF1ab/nsp14A2-B	373	H373Y	Cat	Tat	24	24	Q.1	0.003032
ORF1ab/nsp14A2-B	373	H373Y	Cat	Tat	23	23	AY.44	0.00014
ORF1ab/nsp14A2-B	373	H373del	CAT	---	22	22	B.1.1.7	0.00002
ORF1ab/nsp14A2-B	373	H373Y	Cat	Tat	21	21	B.1.617.2	0.000079
ORF1ab/nsp14A2-B	373	H373H	caT	caC	18	18	AY.54	0.001716
ORF1ab/nsp14A2-B	373	H373Y	Cat	Tat	18	18	B.1.177.62	0.021454
ORF1ab/nsp14A2-B	373	H373Y	Cat	Tat	18	18	P.1	0.000284
ORF1ab/nsp14A2-B	373	H373H	caT	caC	17	17	AY.102	0.000451
ORF1ab/nsp14A2-B	373	H373Y	Cat	Tat	14	14	B.1.177	0.000184
ORF1ab/nsp14A2-B	373	H373Q	caT	caG	12	12	B.1.1.7	0.000011
ORF1ab/nsp14A2-B	373	H373R	cAt	cGt	11	11	All	0.000002
ORF1ab/nsp14A2-B	373	H373Y	Cat	Tat	11	11	AY.25	0.000066
ORF1ab/nsp14A2-B	373	H373Y	Cat	Tat	11	11	P.1.17	0.001779
ORF1ab/nsp14A2-B	373	H373Y	Cat	Tat	10	10	AY.5	0.000206
ORF1ab/nsp14A2-B	373	H373H	caT	caC	9	9	A.28	0.02381
ORF1ab/nsp14A2-B	373	H373Y	Cat	Tat	9	9	AW.1	0.027439
ORF1ab/nsp14A2-B	373	H373N	Cat	Aat	9	9	AY.103	0.000056
ORF1ab/nsp14A2-B	373	H373Y	Cat	Tat	9	9	B.1	0.000082
ORF1ab/nsp14A2-B	373	H373Y	Cat	Tat	9	9	B.1.561	0.003573
ORF1ab/nsp14A2-B	373	H373L	cAt	cTt	8	8	All	0.000002
ORF1ab/nsp14A2-B	373	H373H	caT	caC	8	8	AY.103	0.00005
ORF1ab/nsp14A2-B	373	H373H	caT	caC	8	8	AY.4	0.000012
ORF1ab/nsp14A2-B	373	H373Y	Cat	Tat	8	8	B.1.1.519	0.000318
ORF1ab/nsp14A2-B	373	H373D	Cat	Gat	7	7	All	0.000001
ORF1ab/nsp14A2-B	373	H373H	caT	caC	7	7	AY.4.2	0.000152
ORF1ab/nsp14A2-B	373	H373Y	Cat	Tat	7	7	B.1.1.232	0.012704
ORF1ab/nsp14A2-B	373	H373Y	Cat	Tat	7	7	B.1.526	0.000165
ORF1ab/nsp14A2-B	373	H373del1	caT	ca-	5	6	All	0.000001
ORF1ab/nsp14A2-B	373	H373del1	cAt	c-t	1	6	All	0
ORF1ab/nsp14A2-B	373	H373H	caT	caC	6	6	AY.119	0.000212
ORF1ab/nsp14A2-B	373	H373Y	Cat	Tat	6	6	B.1.258	0.000399
ORF1ab/nsp14A2-B	373	H373N	Cat	Aat	6	6	B.1.617.2	0.000023
ORF1ab/nsp14A2-B	373	H373Y	Cat	Tat	6	6	Q.3	0.00087
ORF1ab/nsp14A2-B	373	H373Y	Cat	Tat	5	5	AY.4.2	0.000108
ORF1ab/nsp14A2-B	373	H373H	caT	caC	5	5	AY.43	0.000022
ORF1ab/nsp14A2-B	373	H373H	caT	caC	5	5	B.1.1.1	0.001633
ORF1ab/nsp14A2-B	373	H373Y	Cat	Tat	5	5	B.1.1.63	0.001929
ORF1ab/nsp14A2-B	373	H373H	caT	caC	5	5	B.1.177	0.000066
ORF1ab/nsp14A2-B	373	H373Y	Cat	Tat	4	4	AY.102	0.000106
ORF1ab/nsp14A2-B	373	H373Y	Cat	Tat	4	4	AY.26	0.000113
ORF1ab/nsp14A2-B	373	H373H	caT	caC	4	4	AY.39.1	0.000158
ORF1ab/nsp14A2-B	373	H373H	caT	caC	4	4	AY.44	0.000024
ORF1ab/nsp14A2-B	373	H373Y	Cat	Tat	4	4	AY.61	0.000419
ORF1ab/nsp14A2-B	373	H373Q	caT	caG	4	4	B.1.1.519	0.000159
ORF1ab/nsp14A2-B	373	H373H	caT	caC	4	4	B.1.570	0.011765
ORF1ab/nsp14A2-B	373	H373Y	Cat	Tat	4	4	B.1.609	0.001918
ORF1ab/nsp14A2-B	373	H373R	cAt	cGt	4	4	B.1.617.2	0.000015
ORF1ab/nsp14A2-B	373	H373H	caT	caC	4	4	C.36.3	0.002269
ORF1ab/nsp14A2-B	373	H373H	caT	caC	4	4	C.37	0.000464
ORF1ab/nsp14A2-B	373	H373H	caT	caC	3	3	AY.3	0.00003
ORF1ab/nsp14A2-B	373	H373H	caT	caC	3	3	AY.39	0.000074
ORF1ab/nsp14A2-B	373	H373R	cAt	cGt	3	3	AY.4	0.000005
ORF1ab/nsp14A2-B	373	H373H	caT	caC	3	3	B.1	0.000027
ORF1ab/nsp14A2-B	373	H373del1	caT	ca-	2	3	B.1	0.000018
ORF1ab/nsp14A2-B	373	H373del1	cAt	c-t	1	3	B.1	0.000009
ORF1ab/nsp14A2-B	373	H373Y	Cat	Tat	3	3	B.1.1	0.000054
ORF1ab/nsp14A2-B	373	H373del	CAT	---	3	3	B.1.177	0.00004
ORF1ab/nsp14A2-B	373	H373Y	Cat	Tat	3	3	B.1.177.44	0.001557
ORF1ab/nsp14A2-B	373	H373Y	Cat	Tat	3	3	B.1.177.7	0.000495
ORF1ab/nsp14A2-B	373	H373Y	Cat	Tat	3	3	B.1.221	0.000213
ORF1ab/nsp14A2-B	373	H373Y	Cat	Tat	3	3	B.1.311	0.000824
ORF1ab/nsp14A2-B	373	H373Y	Cat	Tat	3	3	B.1.36.10	0.014354
ORF1ab/nsp14A2-B	373	H373Y	Cat	Tat	3	3	B.1.36.17	0.001482
ORF1ab/nsp14A2-B	373	H373Y	Cat	Tat	3	3	B.1.438.1	0.000322
ORF1ab/nsp14A2-B	373	H373Y	Cat	Tat	3	3	B.1.616	0.073171
ORF1ab/nsp14A2-B	373	H373N	Cat	Aat	2	2		0.111111
ORF1ab/nsp14A2-B	373	H373Y	Cat	Tat	2	2	AY.14	0.000176
ORF1ab/nsp14A2-B	373	H373Y	Cat	Tat	2	2	AY.20	0.000078
ORF1ab/nsp14A2-B	373	H373Y	Cat	Tat	2	2	AY.29	0.000032
ORF1ab/nsp14A2-B	373	H373Q	caT	caA	2	2	AY.39	0.000049
ORF1ab/nsp14A2-B	373	H373del	CAT	---	2	2	AY.4	0.000003
ORF1ab/nsp14A2-B	373	H373H	caT	caC	2	2	AY.4.5	0.000215
ORF1ab/nsp14A2-B	373	H373Y	Cat	Tat	2	2	AY.42	0.00008
ORF1ab/nsp14A2-B	373	H373N	Cat	Aat	2	2	AY.43	0.000009
ORF1ab/nsp14A2-B	373	H373H	caT	caC	2	2	AY.55	0.001835
ORF1ab/nsp14A2-B	373	H373Y	Cat	Tat	2	2	B.1.1.317	0.000823
ORF1ab/nsp14A2-B	373	H373Y	Cat	Tat	2	2	B.1.1.33	0.000842
ORF1ab/nsp14A2-B	373	H373D	Cat	Gat	2	2	B.1.1.7	0.000002
ORF1ab/nsp14A2-B	373	H373R	cAt	cGt	2	2	B.1.1.7	0.000002
ORF1ab/nsp14A2-B	373	H373L	cAt	cTt	2	2	B.1.1.7	0.000002
ORF1ab/nsp14A2-B	373	H373Y	Cat	Tat	2	2	B.1.160	0.000062
ORF1ab/nsp14A2-B	373	H373H	caT	caC	2	2	B.1.243	0.000139
ORF1ab/nsp14A2-B	373	H373H	caT	caC	2	2	B.1.36	0.000292
ORF1ab/nsp14A2-B	373	H373Y	Cat	Tat	2	2	B.1.568	0.002222
ORF1ab/nsp14A2-B	373	H373H	caT	caC	2	2	B.1.596	0.000174
ORF1ab/nsp14A2-B	373	H373del1	caT	ca-	2	2	B.1.627	0.00404
ORF1ab/nsp14A2-B	373	H373Y	Cat	Tat	2	2	B.1.637	0.000146
ORF1ab/nsp14A2-B	373	H373Y	Cat	Tat	2	2	C.37	0.000232
ORF1ab/nsp14A2-B	373	H373H	caT	caC	2	2	P.1	0.000032
ORF1ab/nsp14A2-B	373	H373Y	Cat	Tat	2	2	P.1.16	0.000748
ORF1ab/nsp14A2-B	373	H373Y	Cat	Tat	1	1		0.055556
ORF1ab/nsp14A2-B	373	H373Q	caT	caA	1	1		0.055556
ORF1ab/nsp14A2-B	373	H373H	caT	caC	1	1	A.23.1	0.000704
ORF1ab/nsp14A2-B	373	H373del	CAT	---	1	1	AD.2	0.000219
ORF1ab/nsp14A2-B	373	H373F	CAt	TTt	1	1	All	0
ORF1ab/nsp14A2-B	373	H373A	CAt	GCt	1	1	All	0
ORF1ab/nsp14A2-B	373	H373P	cAt	cCt	1	1	All	0
ORF1ab/nsp14A2-B	373	H373del2	cAT	c--	1	1	All	0
ORF1ab/nsp14A2-B	373	H373H	caT	caC	1	1	AY.100	0.000046
ORF1ab/nsp14A2-B	373	H373Q	caT	caG	1	1	AY.102	0.000027
ORF1ab/nsp14A2-B	373	H373Q	caT	caG	1	1	AY.103	0.000006
ORF1ab/nsp14A2-B	373	H373H	caT	caC	1	1	AY.105	0.000643
ORF1ab/nsp14A2-B	373	H373Y	Cat	Tat	1	1	AY.110	0.000113
ORF1ab/nsp14A2-B	373	H373Y	Cat	Tat	1	1	AY.117	0.000085
ORF1ab/nsp14A2-B	373	H373H	caT	caC	1	1	AY.117	0.000085
ORF1ab/nsp14A2-B	373	H373Y	Cat	Tat	1	1	AY.119	0.000035
ORF1ab/nsp14A2-B	373	H373H	caT	caC	1	1	AY.121	0.000135
ORF1ab/nsp14A2-B	373	H373R	cAt	cGt	1	1	AY.16.1	0.00047
ORF1ab/nsp14A2-B	373	H373H	caT	caC	1	1	AY.21	0.001898
ORF1ab/nsp14A2-B	373	H373Q	caT	caA	1	1	AY.25	0.000006
ORF1ab/nsp14A2-B	373	H373del1	caT	ca-	1	1	AY.25	0.000006
ORF1ab/nsp14A2-B	373	H373Y	Cat	Tat	1	1	AY.27	0.000065
ORF1ab/nsp14A2-B	373	H373Y	Cat	Tat	1	1	AY.30	0.000396
ORF1ab/nsp14A2-B	373	H373Y	Cat	Tat	1	1	AY.35	0.000233
ORF1ab/nsp14A2-B	373	H373Y	Cat	Tat	1	1	AY.39.1	0.00004
ORF1ab/nsp14A2-B	373	H373D	Cat	Gat	1	1	AY.4.2	0.000022
ORF1ab/nsp14A2-B	373	H373Y	Cat	Tat	1	1	AY.4.5	0.000107
ORF1ab/nsp14A2-B	373	H373L	cAt	cTt	1	1	AY.44	0.000006
ORF1ab/nsp14A2-B	373	H373H	caT	caC	1	1	AY.45	0.000122
ORF1ab/nsp14A2-B	373	H373Y	Cat	Tat	1	1	AY.45	0.000122
ORF1ab/nsp14A2-B	373	H373Y	Cat	Tat	1	1	AY.46	0.000104
ORF1ab/nsp14A2-B	373	H373del	CAT	---	1	1	AY.46.2	0.000635
ORF1ab/nsp14A2-B	373	H373Y	Cat	Tat	1	1	AY.47	0.000031
ORF1ab/nsp14A2-B	373	H373H	caT	caC	1	1	AY.47	0.000031
ORF1ab/nsp14A2-B	373	H373Q	caT	caG	1	1	AY.47	0.000031
ORF1ab/nsp14A2-B	373	H373H	caT	caC	1	1	AY.5	0.000021
ORF1ab/nsp14A2-B	373	H373del	CAT	---	1	1	AY.5	0.000021
ORF1ab/nsp14A2-B	373	H373D	Cat	Gat	1	1	AY.5	0.000021
ORF1ab/nsp14A2-B	373	H373Y	Cat	Tat	1	1	AY.5.3	0.000337
ORF1ab/nsp14A2-B	373	H373Y	Cat	Tat	1	1	AY.59	0.00053
ORF1ab/nsp14A2-B	373	H373Y	Cat	Tat	1	1	AY.6	0.000041
ORF1ab/nsp14A2-B	373	H373del	CAT	---	1	1	AY.67	0.000464
ORF1ab/nsp14A2-B	373	H373H	caT	caC	1	1	AY.7	0.000196
ORF1ab/nsp14A2-B	373	H373Y	Cat	Tat	1	1	AY.7	0.000196
ORF1ab/nsp14A2-B	373	H373H	caT	caC	1	1	AY.72	0.001361
ORF1ab/nsp14A2-B	373	H373Y	Cat	Tat	1	1	AY.72	0.001361
ORF1ab/nsp14A2-B	373	H373H	caT	caC	1	1	AY.75	0.000056
ORF1ab/nsp14A2-B	373	H373H	caT	caC	1	1	AY.84	0.000437
ORF1ab/nsp14A2-B	373	H373Y	Cat	Tat	1	1	AY.9	0.000068
ORF1ab/nsp14A2-B	373	H373H	caT	caC	1	1	AY.93	0.000273
ORF1ab/nsp14A2-B	373	H373H	caT	caC	1	1	AY.98.1	0.000048
ORF1ab/nsp14A2-B	373	H373Y	Cat	Tat	1	1	B	0.000128
ORF1ab/nsp14A2-B	373	H373Q	caT	caG	1	1	B.1	0.000009
ORF1ab/nsp14A2-B	373	H373L	cAt	cTt	1	1	B.1	0.000009
ORF1ab/nsp14A2-B	373	H373Y	Cat	Tat	1	1	B.1.1.170	0.001247
ORF1ab/nsp14A2-B	373	H373Y	Cat	Tat	1	1	B.1.1.216	0.00089
ORF1ab/nsp14A2-B	373	H373L	cAt	cTt	1	1	B.1.1.222	0.000204
ORF1ab/nsp14A2-B	373	H373Y	Cat	Tat	1	1	B.1.1.28	0.000311
ORF1ab/nsp14A2-B	373	H373Y	Cat	Tat	1	1	B.1.1.301	0.001179
ORF1ab/nsp14A2-B	373	H373del	CAT	---	1	1	B.1.1.306	0.000438
ORF1ab/nsp14A2-B	373	H373Y	Cat	Tat	1	1	B.1.1.306	0.000438
ORF1ab/nsp14A2-B	373	H373del	CAT	---	1	1	B.1.1.311	0.000358
ORF1ab/nsp14A2-B	373	H373Y	Cat	Tat	1	1	B.1.1.348	0.000796
ORF1ab/nsp14A2-B	373	H373Y	Cat	Tat	1	1	B.1.1.37	0.000193
ORF1ab/nsp14A2-B	373	H373Y	Cat	Tat	1	1	B.1.1.397	0.002252
ORF1ab/nsp14A2-B	373	H373Y	Cat	Tat	1	1	B.1.1.448	0.002033
ORF1ab/nsp14A2-B	373	H373Y	Cat	Tat	1	1	B.1.1.507	0.008696
ORF1ab/nsp14A2-B	373	H373H	caT	caC	1	1	B.1.1.519	0.00004
ORF1ab/nsp14A2-B	373	H373del2	cAT	c--	1	1	B.1.1.7	0.000001
ORF1ab/nsp14A2-B	373	H373H	caT	caC	1	1	B.1.160	0.000031
ORF1ab/nsp14A2-B	373	H373Y	Cat	Tat	1	1	B.1.177.16	0.000664
ORF1ab/nsp14A2-B	373	H373Y	Cat	Tat	1	1	B.1.177.5	0.001242
ORF1ab/nsp14A2-B	373	H373Y	Cat	Tat	1	1	B.1.177.56	0.000668
ORF1ab/nsp14A2-B	373	H373del	CAT	---	1	1	B.1.177.6	0.000977
ORF1ab/nsp14A2-B	373	H373H	caT	caC	1	1	B.1.177.81	0.000189
ORF1ab/nsp14A2-B	373	H373Y	Cat	Tat	1	1	B.1.177.82	0.000477
ORF1ab/nsp14A2-B	373	H373del	CAT	---	1	1	B.1.2	0.000009
ORF1ab/nsp14A2-B	373	H373Y	Cat	Tat	1	1	B.1.234	0.000132
ORF1ab/nsp14A2-B	373	H373del	CAT	---	1	1	B.1.258.11	0.000396
ORF1ab/nsp14A2-B	373	H373Y	Cat	Tat	1	1	B.1.258.17	0.000104
ORF1ab/nsp14A2-B	373	H373Y	Cat	Tat	1	1	B.1.260	0.003344
ORF1ab/nsp14A2-B	373	H373Y	Cat	Tat	1	1	B.1.298	0.002114
ORF1ab/nsp14A2-B	373	H373Y	Cat	Tat	1	1	B.1.319	0.003049
ORF1ab/nsp14A2-B	373	H373R	cAt	cGt	1	1	B.1.334	0.018182
ORF1ab/nsp14A2-B	373	H373H	caT	caC	1	1	B.1.346	0.001311
ORF1ab/nsp14A2-B	373	H373Y	Cat	Tat	1	1	B.1.349	0.000715
ORF1ab/nsp14A2-B	373	H373P	cAt	cCt	1	1	B.1.351	0.00003
ORF1ab/nsp14A2-B	373	H373D	Cat	Gat	1	1	B.1.351	0.00003
ORF1ab/nsp14A2-B	373	H373A	CAt	GCt	1	1	B.1.351	0.00003
ORF1ab/nsp14A2-B	373	H373L	cAt	cTt	1	1	B.1.351.2	0.000303
ORF1ab/nsp14A2-B	373	H373Q	caT	caA	1	1	B.1.36.1	0.00114
ORF1ab/nsp14A2-B	373	H373Y	Cat	Tat	1	1	B.1.36.18	0.00042
ORF1ab/nsp14A2-B	373	H373Y	Cat	Tat	1	1	B.1.36.29	0.000517
ORF1ab/nsp14A2-B	373	H373Y	Cat	Tat	1	1	B.1.361	0.001289
ORF1ab/nsp14A2-B	373	H373Y	Cat	Tat	1	1	B.1.369	0.000285
ORF1ab/nsp14A2-B	373	H373N	Cat	Aat	1	1	B.1.369	0.000285
ORF1ab/nsp14A2-B	373	H373del	CAT	---	1	1	B.1.415	0.014286
ORF1ab/nsp14A2-B	373	H373Y	Cat	Tat	1	1	B.1.426	0.001009
ORF1ab/nsp14A2-B	373	H373Y	Cat	Tat	1	1	B.1.525	0.000113
ORF1ab/nsp14A2-B	373	H373F	CAt	TTt	1	1	B.1.561	0.000397
ORF1ab/nsp14A2-B	373	H373Y	Cat	Tat	1	1	B.1.575	0.000303
ORF1ab/nsp14A2-B	373	H373Y	Cat	Tat	1	1	B.1.588	0.00091
ORF1ab/nsp14A2-B	373	H373L	cAt	cTt	1	1	B.1.596	0.000087
ORF1ab/nsp14A2-B	373	H373Y	Cat	Tat	1	1	B.1.596	0.000087
ORF1ab/nsp14A2-B	373	H373del	CAT	---	1	1	B.1.617.2	0.000004
ORF1ab/nsp14A2-B	373	H373Q	caT	caA	1	1	B.1.617.2	0.000004
ORF1ab/nsp14A2-B	373	H373D	Cat	Gat	1	1	B.1.617.2	0.000004
ORF1ab/nsp14A2-B	373	H373Y	Cat	Tat	1	1	B.1.621	0.000089
ORF1ab/nsp14A2-B	373	H373H	caT	caC	1	1	B.1.621	0.000089
ORF1ab/nsp14A2-B	373	H373D	Cat	Gat	1	1	B.1.623	0.000536
ORF1ab/nsp14A2-B	373	H373Y	Cat	Tat	1	1	B.1.628	0.000352
ORF1ab/nsp14A2-B	373	H373Y	Cat	Tat	1	1	B.1.84	0.020833
ORF1ab/nsp14A2-B	373	H373H	caT	caC	1	1	B.3	0.000831
ORF1ab/nsp14A2-B	373	H373Q	caT	caA	1	1	B.53	0.011765
ORF1ab/nsp14A2-B	373	H373Y	Cat	Tat	1	1	C.16	0.00106
ORF1ab/nsp14A2-B	373	H373Y	Cat	Tat	1	1	C.27	0.018519
ORF1ab/nsp14A2-B	373	H373Y	Cat	Tat	1	1	C.36	0.000911
ORF1ab/nsp14A2-B	373	H373L	cAt	cTt	1	1	D.2	0.000075
ORF1ab/nsp14A2-B	373	H373Y	Cat	Tat	1	1	D.2	0.000075
ORF1ab/nsp14A2-B	373	H373Y	Cat	Tat	1	1	N.3	0.005814
ORF1ab/nsp14A2-B	373	H373Y	Cat	Tat	1	1	N.5	0.001767
ORF1ab/nsp14A2-B	373	H373del	CAT	---	1	1	P.1.1	0.000318
ORF1ab/nsp14A2-B	373	H373Y	Cat	Tat	1	1	P.1.1	0.000318
ORF1ab/nsp14A2-B	373	H373Y	Cat	Tat	1	1	P.1.12	0.000484
ORF1ab/nsp14A2-B	373	H373H	caT	caC	1	1	P.1.15	0.000232
ORF1ab/nsp14A2-B	373	H373Y	Cat	Tat	1	1	P.1.15	0.000232
ORF1ab/nsp14A2-B	373	H373Q	caT	caG	1	1	Q.8	0.000165
ORF1ab/nsp14A2-B	373	H373Y	Cat	Tat	1	1	U.3	0.003861

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.