CoV-GLUE | Mutations | Mutation
CoV-GLUE Mutation: ORF = ORF1ab/nsp14A2-B : CodonNum = 357
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
| ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
| ORF1ab/nsp14A2-B | 357 | S357I | S6282I | nonsyn | aGt | aTt | 1164 | 1164 | 1 | 19108-19110 |
| ORF1ab/nsp14A2-B | 357 | S357N | S6282N | nonsyn | aGt | aAt | 207 | 207 | 1 | 19108-19110 |
| ORF1ab/nsp14A2-B | 357 | S357G | S6282G | nonsyn | Agt | Ggt | 129 | 129 | 1 | 19108-19110 |
| ORF1ab/nsp14A2-B | 357 | S357S | S6282S | syn | agT | agC | 87 | 87 | 1 | 19108-19110 |
| ORF1ab/nsp14A2-B | 357 | S357del | S6282del | del | AGT | --- | 40 | 40 | 1 | 19108-19110 |
| ORF1ab/nsp14A2-B | 357 | S357R | S6282R | nonsyn | Agt | Cgt | 26 | 16 | 0.615385 | 19108-19110 |
| ORF1ab/nsp14A2-B | 357 | S357R | S6282R | nonsyn | agT | agG | 26 | 7 | 0.269231 | 19108-19110 |
| ORF1ab/nsp14A2-B | 357 | S357R | S6282R | nonsyn | agT | agA | 26 | 3 | 0.115385 | 19108-19110 |
| ORF1ab/nsp14A2-B | 357 | S357C | S6282C | nonsyn | Agt | Tgt | 18 | 18 | 1 | 19108-19110 |
| ORF1ab/nsp14A2-B | 357 | S357T | S6282T | nonsyn | aGt | aCt | 9 | 9 | 1 | 19108-19110 |
| ORF1ab/nsp14A2-B | 357 | S357del1 | S6282del1 | del | agT | ag- | 3 | 2 | 0.666667 | 19108-19110 |
| ORF1ab/nsp14A2-B | 357 | S357del1 | S6282del1 | del | Agt | -gt | 3 | 1 | 0.333333 | 19108-19110 |
| ORF1ab/nsp14A2-B | 357 | S357K | S6282K | nonsyn | aGT | aAA | 2 | 1 | 0.5 | 19108-19110 |
| ORF1ab/nsp14A2-B | 357 | S357K | S6282K | nonsyn | aGT | aAG | 2 | 1 | 0.5 | 19108-19110 |
| ORF1ab/nsp14A2-B | 357 | S357A | S6282A | nonsyn | AGt | GCt | 1 | 1 | 1 | 19108-19110 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
| ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 1164 | 1164 | All | 0.000223 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 300 | 300 | B.1.1.7 | 0.000269 |
| ORF1ab/nsp14A2-B | 357 | S357N | aGt | aAt | 207 | 207 | All | 0.00004 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 133 | 133 | AY.4 | 0.000207 |
| ORF1ab/nsp14A2-B | 357 | S357G | Agt | Ggt | 129 | 129 | All | 0.000025 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 103 | 103 | B.1.617.2 | 0.000388 |
| ORF1ab/nsp14A2-B | 357 | S357S | agT | agC | 87 | 87 | All | 0.000017 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 76 | 76 | AY.103 | 0.000472 |
| ORF1ab/nsp14A2-B | 357 | S357N | aGt | aAt | 63 | 63 | B.1.1.7 | 0.000056 |
| ORF1ab/nsp14A2-B | 357 | S357N | aGt | aAt | 60 | 60 | AY.25 | 0.000361 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 50 | 50 | AY.43 | 0.000222 |
| ORF1ab/nsp14A2-B | 357 | S357del | AGT | --- | 40 | 40 | All | 0.000008 |
| ORF1ab/nsp14A2-B | 357 | S357R | Agt | Cgt | 16 | 26 | All | 0.000003 |
| ORF1ab/nsp14A2-B | 357 | S357R | agT | agG | 7 | 26 | All | 0.000001 |
| ORF1ab/nsp14A2-B | 357 | S357R | agT | agA | 3 | 26 | All | 0.000001 |
| ORF1ab/nsp14A2-B | 357 | S357S | agT | agC | 26 | 26 | AY.4 | 0.00004 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 25 | 25 | AY.44 | 0.000152 |
| ORF1ab/nsp14A2-B | 357 | S357G | Agt | Ggt | 20 | 20 | L.4 | 1 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 19 | 19 | B.1 | 0.000174 |
| ORF1ab/nsp14A2-B | 357 | S357C | Agt | Tgt | 18 | 18 | All | 0.000003 |
| ORF1ab/nsp14A2-B | 357 | S357G | Agt | Ggt | 18 | 18 | AY.4 | 0.000028 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 18 | 18 | B.1.177.73 | 0.010193 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 18 | 18 | P.1 | 0.000284 |
| ORF1ab/nsp14A2-B | 357 | S357N | aGt | aAt | 17 | 17 | AY.4 | 0.000026 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 16 | 16 | B.1.36.29 | 0.008277 |
| ORF1ab/nsp14A2-B | 357 | S357N | aGt | aAt | 16 | 16 | B.1.617.2 | 0.00006 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 15 | 15 | AY.3 | 0.000149 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 14 | 14 | AY.100 | 0.000644 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 14 | 14 | AY.120 | 0.000521 |
| ORF1ab/nsp14A2-B | 357 | S357R | Agt | Cgt | 14 | 14 | AY.39.1 | 0.000555 |
| ORF1ab/nsp14A2-B | 357 | S357S | agT | agC | 14 | 14 | B.1.1.7 | 0.000013 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 13 | 13 | AY.102 | 0.000345 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 13 | 13 | AY.39.1 | 0.000515 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 13 | 13 | AY.5 | 0.000268 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 13 | 13 | B.1.429 | 0.000306 |
| ORF1ab/nsp14A2-B | 357 | S357S | agT | agC | 13 | 13 | B.1.617.2 | 0.000049 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 12 | 12 | AY.98 | 0.000948 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 12 | 12 | B.1.1 | 0.000218 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 12 | 12 | B.1.351 | 0.000357 |
| ORF1ab/nsp14A2-B | 357 | S357G | Agt | Ggt | 12 | 12 | B.1.617.2 | 0.000045 |
| ORF1ab/nsp14A2-B | 357 | S357G | Agt | Ggt | 11 | 11 | AY.46.6 | 0.000794 |
| ORF1ab/nsp14A2-B | 357 | S357G | Agt | Ggt | 10 | 10 | AY.44 | 0.000061 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 10 | 10 | AY.47 | 0.000311 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 10 | 10 | B.1.1.512 | 0.285714 |
| ORF1ab/nsp14A2-B | 357 | S357del | AGT | --- | 10 | 10 | B.1.1.7 | 0.000009 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 10 | 10 | B.1.2 | 0.000088 |
| ORF1ab/nsp14A2-B | 357 | S357T | aGt | aCt | 9 | 9 | All | 0.000002 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 9 | 9 | AY.25 | 0.000054 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 8 | 8 | AY.39 | 0.000198 |
| ORF1ab/nsp14A2-B | 357 | S357N | aGt | aAt | 8 | 8 | AY.44 | 0.000049 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 8 | 8 | B.1.160.28 | 0.023392 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 7 | 7 | AY.20 | 0.000272 |
| ORF1ab/nsp14A2-B | 357 | S357C | Agt | Tgt | 7 | 7 | AY.25 | 0.000042 |
| ORF1ab/nsp14A2-B | 357 | S357del | AGT | --- | 7 | 7 | AY.4 | 0.000011 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 7 | 7 | AY.6 | 0.000288 |
| ORF1ab/nsp14A2-B | 357 | S357N | aGt | aAt | 7 | 7 | B.1.1.1 | 0.002287 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 6 | 6 | AY.29 | 0.000095 |
| ORF1ab/nsp14A2-B | 357 | S357G | Agt | Ggt | 6 | 6 | AY.3 | 0.00006 |
| ORF1ab/nsp14A2-B | 357 | S357S | agT | agC | 6 | 6 | AY.44 | 0.000037 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 6 | 6 | AY.99.2 | 0.000553 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 6 | 6 | B.1.36 | 0.000875 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 6 | 6 | B.1.427 | 0.000303 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 5 | 5 | AY.26 | 0.000142 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 5 | 5 | AY.42 | 0.000201 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 5 | 5 | AZ.2 | 0.004105 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 5 | 5 | B.1.1.519 | 0.000199 |
| ORF1ab/nsp14A2-B | 357 | S357G | Agt | Ggt | 5 | 5 | B.1.1.7 | 0.000004 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 5 | 5 | B.1.617.1 | 0.000645 |
| ORF1ab/nsp14A2-B | 357 | S357C | Agt | Tgt | 5 | 5 | B.1.617.2 | 0.000019 |
| ORF1ab/nsp14A2-B | 357 | S357G | Agt | Ggt | 4 | 4 | AY.103 | 0.000025 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 4 | 4 | AY.107 | 0.001864 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 4 | 4 | AY.114 | 0.000924 |
| ORF1ab/nsp14A2-B | 357 | S357G | Agt | Ggt | 4 | 4 | AY.25 | 0.000024 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 4 | 4 | AY.4.2 | 0.000087 |
| ORF1ab/nsp14A2-B | 357 | S357G | Agt | Ggt | 4 | 4 | AY.4.5 | 0.00043 |
| ORF1ab/nsp14A2-B | 357 | S357G | Agt | Ggt | 4 | 4 | AY.46 | 0.000416 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 4 | 4 | AY.61 | 0.000419 |
| ORF1ab/nsp14A2-B | 357 | S357del1 | agT | ag- | 2 | 3 | All | 0 |
| ORF1ab/nsp14A2-B | 357 | S357del1 | Agt | -gt | 1 | 3 | All | 0 |
| ORF1ab/nsp14A2-B | 357 | S357G | Agt | Ggt | 3 | 3 | AY.102 | 0.00008 |
| ORF1ab/nsp14A2-B | 357 | S357S | agT | agC | 3 | 3 | AY.103 | 0.000019 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 3 | 3 | AY.14 | 0.000264 |
| ORF1ab/nsp14A2-B | 357 | S357N | aGt | aAt | 3 | 3 | AY.26 | 0.000085 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 3 | 3 | AY.32 | 0.001597 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 3 | 3 | AY.33 | 0.0002 |
| ORF1ab/nsp14A2-B | 357 | S357T | aGt | aCt | 3 | 3 | AY.4 | 0.000005 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 3 | 3 | AY.4.5 | 0.000322 |
| ORF1ab/nsp14A2-B | 357 | S357N | aGt | aAt | 3 | 3 | AY.43 | 0.000013 |
| ORF1ab/nsp14A2-B | 357 | S357T | aGt | aCt | 3 | 3 | AY.5 | 0.000062 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 3 | 3 | AY.9.2 | 0.00011 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 3 | 3 | AY.98.1 | 0.000145 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 3 | 3 | B.1.1.28 | 0.000934 |
| ORF1ab/nsp14A2-B | 357 | S357G | Agt | Ggt | 3 | 3 | B.1.160 | 0.000094 |
| ORF1ab/nsp14A2-B | 357 | S357N | aGt | aAt | 3 | 3 | B.1.177 | 0.00004 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 3 | 3 | B.1.177.7 | 0.000495 |
| ORF1ab/nsp14A2-B | 357 | S357N | aGt | aAt | 3 | 3 | B.1.2 | 0.000026 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 3 | 3 | B.1.234 | 0.000396 |
| ORF1ab/nsp14A2-B | 357 | S357S | agT | agC | 3 | 3 | B.1.427 | 0.000151 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 3 | 3 | B.1.565 | 0.002431 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 3 | 3 | B.1.582 | 0.001472 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 3 | 3 | B.1.595 | 0.000783 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 3 | 3 | B.1.596 | 0.000261 |
| ORF1ab/nsp14A2-B | 357 | S357del | AGT | --- | 3 | 3 | B.1.617.2 | 0.000011 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 3 | 3 | B.1.637 | 0.000219 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 3 | 3 | C.37 | 0.000348 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 3 | 3 | D.2 | 0.000225 |
| ORF1ab/nsp14A2-B | 357 | S357S | agT | agC | 3 | 3 | P.1.1 | 0.000953 |
| ORF1ab/nsp14A2-B | 357 | S357N | aGt | aAt | 2 | 2 | 0.111111 | |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 2 | 2 | A.1 | 0.000564 |
| ORF1ab/nsp14A2-B | 357 | S357K | aGT | aAA | 1 | 2 | All | 0 |
| ORF1ab/nsp14A2-B | 357 | S357K | aGT | aAG | 1 | 2 | All | 0 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 2 | 2 | AY.117 | 0.000169 |
| ORF1ab/nsp14A2-B | 357 | S357G | Agt | Ggt | 2 | 2 | AY.119 | 0.000071 |
| ORF1ab/nsp14A2-B | 357 | S357del | AGT | --- | 2 | 2 | AY.14 | 0.000176 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 2 | 2 | AY.16 | 0.000759 |
| ORF1ab/nsp14A2-B | 357 | S357G | Agt | Ggt | 2 | 2 | AY.23 | 0.000139 |
| ORF1ab/nsp14A2-B | 357 | S357S | agT | agC | 2 | 2 | AY.26 | 0.000057 |
| ORF1ab/nsp14A2-B | 357 | S357R | agT | agA | 2 | 2 | AY.26 | 0.000057 |
| ORF1ab/nsp14A2-B | 357 | S357del | AGT | --- | 2 | 2 | AY.39 | 0.000049 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 2 | 2 | AY.4.4 | 0.000818 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 2 | 2 | AY.46.4 | 0.000329 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 2 | 2 | AY.70 | 0.000417 |
| ORF1ab/nsp14A2-B | 357 | S357G | Agt | Ggt | 2 | 2 | AY.9 | 0.000135 |
| ORF1ab/nsp14A2-B | 357 | S357R | agT | agG | 1 | 2 | B.1 | 0.000009 |
| ORF1ab/nsp14A2-B | 357 | S357R | Agt | Cgt | 1 | 2 | B.1 | 0.000009 |
| ORF1ab/nsp14A2-B | 357 | S357del | AGT | --- | 2 | 2 | B.1.1.294 | 0.002532 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 2 | 2 | B.1.111 | 0.00235 |
| ORF1ab/nsp14A2-B | 357 | S357del | AGT | --- | 2 | 2 | B.1.177 | 0.000026 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 2 | 2 | B.1.221 | 0.000142 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 2 | 2 | B.1.243 | 0.000139 |
| ORF1ab/nsp14A2-B | 357 | S357S | agT | agC | 2 | 2 | B.1.311 | 0.000549 |
| ORF1ab/nsp14A2-B | 357 | S357G | Agt | Ggt | 2 | 2 | B.1.526 | 0.000047 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 2 | 2 | B.1.597 | 0.009259 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 2 | 2 | B.1.620 | 0.001892 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 2 | 2 | P.1.17 | 0.000324 |
| ORF1ab/nsp14A2-B | 357 | S357K | aGT | aAG | 1 | 1 | 0.055556 | |
| ORF1ab/nsp14A2-B | 357 | S357R | agT | agG | 1 | 1 | 0.055556 | |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 1 | 1 | AE.8 | 0.000489 |
| ORF1ab/nsp14A2-B | 357 | S357A | AGt | GCt | 1 | 1 | All | 0 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 1 | 1 | AP.1 | 0.001502 |
| ORF1ab/nsp14A2-B | 357 | S357N | aGt | aAt | 1 | 1 | AY.10 | 0.00053 |
| ORF1ab/nsp14A2-B | 357 | S357S | agT | agC | 1 | 1 | AY.100 | 0.000046 |
| ORF1ab/nsp14A2-B | 357 | S357T | aGt | aCt | 1 | 1 | AY.100 | 0.000046 |
| ORF1ab/nsp14A2-B | 357 | S357del | AGT | --- | 1 | 1 | AY.102 | 0.000027 |
| ORF1ab/nsp14A2-B | 357 | S357N | aGt | aAt | 1 | 1 | AY.103 | 0.000006 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 1 | 1 | AY.106 | 0.000335 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 1 | 1 | AY.118 | 0.000063 |
| ORF1ab/nsp14A2-B | 357 | S357N | aGt | aAt | 1 | 1 | AY.119 | 0.000035 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 1 | 1 | AY.121 | 0.000135 |
| ORF1ab/nsp14A2-B | 357 | S357N | aGt | aAt | 1 | 1 | AY.13 | 0.000161 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 1 | 1 | AY.13 | 0.000161 |
| ORF1ab/nsp14A2-B | 357 | S357G | Agt | Ggt | 1 | 1 | AY.14 | 0.000088 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 1 | 1 | AY.19 | 0.00114 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 1 | 1 | AY.23 | 0.00007 |
| ORF1ab/nsp14A2-B | 357 | S357S | agT | agC | 1 | 1 | AY.25 | 0.000006 |
| ORF1ab/nsp14A2-B | 357 | S357C | Agt | Tgt | 1 | 1 | AY.26 | 0.000028 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 1 | 1 | AY.29.1 | 0.000221 |
| ORF1ab/nsp14A2-B | 357 | S357N | aGt | aAt | 1 | 1 | AY.3 | 0.00001 |
| ORF1ab/nsp14A2-B | 357 | S357del | AGT | --- | 1 | 1 | AY.3 | 0.00001 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 1 | 1 | AY.34.1 | 0.00051 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 1 | 1 | AY.36 | 0.000148 |
| ORF1ab/nsp14A2-B | 357 | S357N | aGt | aAt | 1 | 1 | AY.39 | 0.000025 |
| ORF1ab/nsp14A2-B | 357 | S357S | agT | agC | 1 | 1 | AY.39 | 0.000025 |
| ORF1ab/nsp14A2-B | 357 | S357G | Agt | Ggt | 1 | 1 | AY.39 | 0.000025 |
| ORF1ab/nsp14A2-B | 357 | S357R | Agt | Cgt | 1 | 1 | AY.4 | 0.000002 |
| ORF1ab/nsp14A2-B | 357 | S357T | aGt | aCt | 1 | 1 | AY.4.1 | 0.000737 |
| ORF1ab/nsp14A2-B | 357 | S357N | aGt | aAt | 1 | 1 | AY.4.2 | 0.000022 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 1 | 1 | AY.4.2.1 | 0.000149 |
| ORF1ab/nsp14A2-B | 357 | S357S | agT | agC | 1 | 1 | AY.43 | 0.000004 |
| ORF1ab/nsp14A2-B | 357 | S357del | AGT | --- | 1 | 1 | AY.43 | 0.000004 |
| ORF1ab/nsp14A2-B | 357 | S357S | agT | agC | 1 | 1 | AY.45 | 0.000122 |
| ORF1ab/nsp14A2-B | 357 | S357N | aGt | aAt | 1 | 1 | AY.45 | 0.000122 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 1 | 1 | AY.45 | 0.000122 |
| ORF1ab/nsp14A2-B | 357 | S357N | aGt | aAt | 1 | 1 | AY.46 | 0.000104 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 1 | 1 | AY.46 | 0.000104 |
| ORF1ab/nsp14A2-B | 357 | S357N | aGt | aAt | 1 | 1 | AY.46.6 | 0.000072 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 1 | 1 | AY.46.6 | 0.000072 |
| ORF1ab/nsp14A2-B | 357 | S357S | agT | agC | 1 | 1 | AY.46.6 | 0.000072 |
| ORF1ab/nsp14A2-B | 357 | S357K | aGT | aAA | 1 | 1 | AY.48 | 0.000465 |
| ORF1ab/nsp14A2-B | 357 | S357del | AGT | --- | 1 | 1 | AY.5 | 0.000021 |
| ORF1ab/nsp14A2-B | 357 | S357S | agT | agC | 1 | 1 | AY.5 | 0.000021 |
| ORF1ab/nsp14A2-B | 357 | S357G | Agt | Ggt | 1 | 1 | AY.5 | 0.000021 |
| ORF1ab/nsp14A2-B | 357 | S357S | agT | agC | 1 | 1 | AY.5.3 | 0.000337 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 1 | 1 | AY.53 | 0.000288 |
| ORF1ab/nsp14A2-B | 357 | S357del | AGT | --- | 1 | 1 | AY.54 | 0.000095 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 1 | 1 | AY.54 | 0.000095 |
| ORF1ab/nsp14A2-B | 357 | S357N | aGt | aAt | 1 | 1 | AY.59 | 0.00053 |
| ORF1ab/nsp14A2-B | 357 | S357N | aGt | aAt | 1 | 1 | AY.61 | 0.000105 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 1 | 1 | AY.68 | 0.000274 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 1 | 1 | AY.69 | 0.000187 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 1 | 1 | AY.71 | 0.000475 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 1 | 1 | AY.74 | 0.000116 |
| ORF1ab/nsp14A2-B | 357 | S357C | Agt | Tgt | 1 | 1 | AY.75 | 0.000056 |
| ORF1ab/nsp14A2-B | 357 | S357N | aGt | aAt | 1 | 1 | AY.75.1 | 0.00018 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 1 | 1 | AY.75.1 | 0.00018 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 1 | 1 | AY.77 | 0.001127 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 1 | 1 | AY.8 | 0.000606 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 1 | 1 | AY.84 | 0.000437 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 1 | 1 | AY.9 | 0.000068 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 1 | 1 | AY.93 | 0.000273 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 1 | 1 | AY.94 | 0.000443 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 1 | 1 | AY.99.1 | 0.001553 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 1 | 1 | AZ.1 | 0.000867 |
| ORF1ab/nsp14A2-B | 357 | S357T | aGt | aCt | 1 | 1 | B.1 | 0.000009 |
| ORF1ab/nsp14A2-B | 357 | S357G | Agt | Ggt | 1 | 1 | B.1 | 0.000009 |
| ORF1ab/nsp14A2-B | 357 | S357S | agT | agC | 1 | 1 | B.1 | 0.000009 |
| ORF1ab/nsp14A2-B | 357 | S357G | Agt | Ggt | 1 | 1 | B.1.1 | 0.000018 |
| ORF1ab/nsp14A2-B | 357 | S357C | Agt | Tgt | 1 | 1 | B.1.1.1 | 0.000327 |
| ORF1ab/nsp14A2-B | 357 | S357G | Agt | Ggt | 1 | 1 | B.1.1.176 | 0.000439 |
| ORF1ab/nsp14A2-B | 357 | S357N | aGt | aAt | 1 | 1 | B.1.1.176 | 0.000439 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 1 | 1 | B.1.1.189 | 0.001513 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 1 | 1 | B.1.1.254 | 0.011236 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 1 | 1 | B.1.1.258 | 0.003257 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 1 | 1 | B.1.1.284 | 0.000107 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 1 | 1 | B.1.1.305 | 0.003861 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 1 | 1 | B.1.1.306 | 0.000438 |
| ORF1ab/nsp14A2-B | 357 | S357del | AGT | --- | 1 | 1 | B.1.1.306 | 0.000438 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 1 | 1 | B.1.1.311 | 0.000358 |
| ORF1ab/nsp14A2-B | 357 | S357del1 | agT | ag- | 1 | 1 | B.1.1.311 | 0.000358 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 1 | 1 | B.1.1.317 | 0.000412 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 1 | 1 | B.1.1.33 | 0.000421 |
| ORF1ab/nsp14A2-B | 357 | S357G | Agt | Ggt | 1 | 1 | B.1.1.336 | 0.016667 |
| ORF1ab/nsp14A2-B | 357 | S357G | Agt | Ggt | 1 | 1 | B.1.1.37 | 0.000193 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 1 | 1 | B.1.1.39 | 0.00051 |
| ORF1ab/nsp14A2-B | 357 | S357G | Agt | Ggt | 1 | 1 | B.1.1.420 | 0.001006 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 1 | 1 | B.1.1.434 | 0.000349 |
| ORF1ab/nsp14A2-B | 357 | S357G | Agt | Ggt | 1 | 1 | B.1.1.523 | 0.001563 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 1 | 1 | B.1.1.57 | 0.011494 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 1 | 1 | B.1.1.63 | 0.000386 |
| ORF1ab/nsp14A2-B | 357 | S357N | aGt | aAt | 1 | 1 | B.1.1.63 | 0.000386 |
| ORF1ab/nsp14A2-B | 357 | S357R | agT | agG | 1 | 1 | B.1.1.7 | 0.000001 |
| ORF1ab/nsp14A2-B | 357 | S357C | Agt | Tgt | 1 | 1 | B.1.1.7 | 0.000001 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 1 | 1 | B.1.128 | 0.000635 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 1 | 1 | B.1.160 | 0.000031 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 1 | 1 | B.1.177 | 0.000013 |
| ORF1ab/nsp14A2-B | 357 | S357G | Agt | Ggt | 1 | 1 | B.1.177 | 0.000013 |
| ORF1ab/nsp14A2-B | 357 | S357R | agT | agG | 1 | 1 | B.1.177 | 0.000013 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 1 | 1 | B.1.177.19 | 0.001431 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 1 | 1 | B.1.177.4 | 0.000211 |
| ORF1ab/nsp14A2-B | 357 | S357del | AGT | --- | 1 | 1 | B.1.177.51 | 0.004566 |
| ORF1ab/nsp14A2-B | 357 | S357del | AGT | --- | 1 | 1 | B.1.177.6 | 0.000977 |
| ORF1ab/nsp14A2-B | 357 | S357S | agT | agC | 1 | 1 | B.1.177.73 | 0.000566 |
| ORF1ab/nsp14A2-B | 357 | S357S | agT | agC | 1 | 1 | B.1.177.86 | 0.000183 |
| ORF1ab/nsp14A2-B | 357 | S357del | AGT | --- | 1 | 1 | B.1.2 | 0.000009 |
| ORF1ab/nsp14A2-B | 357 | S357del1 | Agt | -gt | 1 | 1 | B.1.2 | 0.000009 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 1 | 1 | B.1.221.4 | 0.004167 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 1 | 1 | B.1.224 | 0.025 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 1 | 1 | B.1.232 | 0.000537 |
| ORF1ab/nsp14A2-B | 357 | S357S | agT | agC | 1 | 1 | B.1.236 | 0.002053 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 1 | 1 | B.1.241 | 0.000812 |
| ORF1ab/nsp14A2-B | 357 | S357N | aGt | aAt | 1 | 1 | B.1.243 | 0.00007 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 1 | 1 | B.1.258 | 0.000067 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 1 | 1 | B.1.258.3 | 0.001675 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 1 | 1 | B.1.311 | 0.000275 |
| ORF1ab/nsp14A2-B | 357 | S357del1 | agT | ag- | 1 | 1 | B.1.329 | 0.000608 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 1 | 1 | B.1.337 | 0.005587 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 1 | 1 | B.1.351.3 | 0.000876 |
| ORF1ab/nsp14A2-B | 357 | S357G | Agt | Ggt | 1 | 1 | B.1.36 | 0.000146 |
| ORF1ab/nsp14A2-B | 357 | S357A | AGt | GCt | 1 | 1 | B.1.36.1 | 0.00114 |
| ORF1ab/nsp14A2-B | 357 | S357del | AGT | --- | 1 | 1 | B.1.36.16 | 0.001425 |
| ORF1ab/nsp14A2-B | 357 | S357N | aGt | aAt | 1 | 1 | B.1.36.29 | 0.000517 |
| ORF1ab/nsp14A2-B | 357 | S357S | agT | agC | 1 | 1 | B.1.36.29 | 0.000517 |
| ORF1ab/nsp14A2-B | 357 | S357R | agT | agG | 1 | 1 | B.1.362 | 0.001541 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 1 | 1 | B.1.367 | 0.000792 |
| ORF1ab/nsp14A2-B | 357 | S357del | AGT | --- | 1 | 1 | B.1.415 | 0.014286 |
| ORF1ab/nsp14A2-B | 357 | S357N | aGt | aAt | 1 | 1 | B.1.427 | 0.00005 |
| ORF1ab/nsp14A2-B | 357 | S357del | AGT | --- | 1 | 1 | B.1.468 | 0.005714 |
| ORF1ab/nsp14A2-B | 357 | S357R | agT | agG | 1 | 1 | B.1.526 | 0.000024 |
| ORF1ab/nsp14A2-B | 357 | S357N | aGt | aAt | 1 | 1 | B.1.561 | 0.000397 |
| ORF1ab/nsp14A2-B | 357 | S357C | Agt | Tgt | 1 | 1 | B.1.590 | 0.004545 |
| ORF1ab/nsp14A2-B | 357 | S357R | agT | agA | 1 | 1 | B.1.609 | 0.000479 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 1 | 1 | B.1.619 | 0.000871 |
| ORF1ab/nsp14A2-B | 357 | S357C | Agt | Tgt | 1 | 1 | B.1.620 | 0.000946 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 1 | 1 | B.1.621 | 0.000089 |
| ORF1ab/nsp14A2-B | 357 | S357S | agT | agC | 1 | 1 | B.1.621.1 | 0.000506 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 1 | 1 | B.1.623 | 0.000536 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 1 | 1 | B.1.627 | 0.00202 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 1 | 1 | B.40 | 0.000364 |
| ORF1ab/nsp14A2-B | 357 | S357G | Agt | Ggt | 1 | 1 | C.35 | 0.000774 |
| ORF1ab/nsp14A2-B | 357 | S357G | Agt | Ggt | 1 | 1 | C.37 | 0.000116 |
| ORF1ab/nsp14A2-B | 357 | S357N | aGt | aAt | 1 | 1 | L.3 | 0.003546 |
| ORF1ab/nsp14A2-B | 357 | S357S | agT | agC | 1 | 1 | P.1 | 0.000016 |
| ORF1ab/nsp14A2-B | 357 | S357N | aGt | aAt | 1 | 1 | P.1 | 0.000016 |
| ORF1ab/nsp14A2-B | 357 | S357G | Agt | Ggt | 1 | 1 | P.1 | 0.000016 |
| ORF1ab/nsp14A2-B | 357 | S357R | agT | agG | 1 | 1 | P.1 | 0.000016 |
| ORF1ab/nsp14A2-B | 357 | S357G | Agt | Ggt | 1 | 1 | P.1.10 | 0.000269 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 1 | 1 | P.1.10 | 0.000269 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 1 | 1 | P.1.14 | 0.000048 |
| ORF1ab/nsp14A2-B | 357 | S357G | Agt | Ggt | 1 | 1 | P.1.7 | 0.000319 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 1 | 1 | P.1.8 | 0.004785 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 1 | 1 | Q.1 | 0.000126 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 1 | 1 | Q.8 | 0.000165 |
| ORF1ab/nsp14A2-B | 357 | S357N | aGt | aAt | 1 | 1 | R.1 | 0.00009 |
| ORF1ab/nsp14A2-B | 357 | S357I | aGt | aTt | 1 | 1 | R.1 | 0.00009 |
 |
 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
|