CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp14A2-B | 35 | T35T | T5960T | syn | acT | acC | 480 | 400 | 0.833333 | 18142-18144 |
ORF1ab/nsp14A2-B | 35 | T35T | T5960T | syn | acT | acA | 480 | 56 | 0.116667 | 18142-18144 |
ORF1ab/nsp14A2-B | 35 | T35T | T5960T | syn | acT | acG | 480 | 24 | 0.05 | 18142-18144 |
ORF1ab/nsp14A2-B | 35 | T35I | T5960I | nonsyn | aCt | aTt | 98 | 93 | 0.94898 | 18142-18144 |
ORF1ab/nsp14A2-B | 35 | T35I | T5960I | nonsyn | aCT | aTC | 98 | 3 | 0.0306122 | 18142-18144 |
ORF1ab/nsp14A2-B | 35 | T35I | T5960I | nonsyn | aCT | aTA | 98 | 2 | 0.0204082 | 18142-18144 |
ORF1ab/nsp14A2-B | 35 | T35N | T5960N | nonsyn | aCt | aAt | 49 | 47 | 0.959184 | 18142-18144 |
ORF1ab/nsp14A2-B | 35 | T35N | T5960N | nonsyn | aCT | aAC | 49 | 2 | 0.0408163 | 18142-18144 |
ORF1ab/nsp14A2-B | 35 | T35A | T5960A | nonsyn | Act | Gct | 37 | 37 | 1 | 18142-18144 |
ORF1ab/nsp14A2-B | 35 | T35del | T5960del | del | ACT | --- | 35 | 35 | 1 | 18142-18144 |
ORF1ab/nsp14A2-B | 35 | T35V | T5960V | nonsyn | ACT | GTC | 6 | 2 | 0.333333 | 18142-18144 |
ORF1ab/nsp14A2-B | 35 | T35L | T5960L | nonsyn | ACT | CTA | 6 | 2 | 0.333333 | 18142-18144 |
ORF1ab/nsp14A2-B | 35 | T35L | T5960L | nonsyn | ACT | CTC | 6 | 2 | 0.333333 | 18142-18144 |
ORF1ab/nsp14A2-B | 35 | T35L | T5960L | nonsyn | ACt | CTt | 6 | 2 | 0.333333 | 18142-18144 |
ORF1ab/nsp14A2-B | 35 | T35V | T5960V | nonsyn | ACT | GTA | 6 | 2 | 0.333333 | 18142-18144 |
ORF1ab/nsp14A2-B | 35 | T35V | T5960V | nonsyn | ACt | GTt | 6 | 2 | 0.333333 | 18142-18144 |
ORF1ab/nsp14A2-B | 35 | T35P | T5960P | nonsyn | Act | Cct | 5 | 3 | 0.6 | 18142-18144 |
ORF1ab/nsp14A2-B | 35 | T35K | T5960K | nonsyn | aCT | aAA | 5 | 3 | 0.6 | 18142-18144 |
ORF1ab/nsp14A2-B | 35 | T35P | T5960P | nonsyn | AcT | CcC | 5 | 2 | 0.4 | 18142-18144 |
ORF1ab/nsp14A2-B | 35 | T35K | T5960K | nonsyn | aCT | aAG | 5 | 2 | 0.4 | 18142-18144 |
ORF1ab/nsp14A2-B | 35 | T35del1 | T5960del1 | del | aCt | a-t | 2 | 2 | 1 | 18142-18144 |
ORF1ab/nsp14A2-B | 35 | T35S | T5960S | nonsyn | aCt | aGt | 2 | 1 | 0.5 | 18142-18144 |
ORF1ab/nsp14A2-B | 35 | T35S | T5960S | nonsyn | Act | Tct | 2 | 1 | 0.5 | 18142-18144 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp14A2-B | 35 | T35T | acT | acC | 400 | 480 | All | 0.000077 |
ORF1ab/nsp14A2-B | 35 | T35T | acT | acA | 56 | 480 | All | 0.000011 |
ORF1ab/nsp14A2-B | 35 | T35T | acT | acG | 24 | 480 | All | 0.000005 |
ORF1ab/nsp14A2-B | 35 | T35T | acT | acC | 164 | 164 | B.1.1.138 | 0.993939 |
ORF1ab/nsp14A2-B | 35 | T35I | aCt | aTt | 93 | 98 | All | 0.000018 |
ORF1ab/nsp14A2-B | 35 | T35I | aCT | aTC | 3 | 98 | All | 0.000001 |
ORF1ab/nsp14A2-B | 35 | T35I | aCT | aTA | 2 | 98 | All | 0 |
ORF1ab/nsp14A2-B | 35 | T35N | aCt | aAt | 47 | 49 | All | 0.000009 |
ORF1ab/nsp14A2-B | 35 | T35N | aCT | aAC | 2 | 49 | All | 0 |
ORF1ab/nsp14A2-B | 35 | T35T | acT | acC | 40 | 43 | B.1.1.7 | 0.000036 |
ORF1ab/nsp14A2-B | 35 | T35T | acT | acG | 3 | 43 | B.1.1.7 | 0.000003 |
ORF1ab/nsp14A2-B | 35 | T35A | Act | Gct | 37 | 37 | All | 0.000007 |
ORF1ab/nsp14A2-B | 35 | T35del | ACT | --- | 35 | 35 | All | 0.000007 |
ORF1ab/nsp14A2-B | 35 | T35T | acT | acC | 29 | 32 | B.1 | 0.000266 |
ORF1ab/nsp14A2-B | 35 | T35T | acT | acA | 3 | 32 | B.1 | 0.000027 |
ORF1ab/nsp14A2-B | 35 | T35T | acT | acC | 25 | 25 | AY.25 | 0.00015 |
ORF1ab/nsp14A2-B | 35 | T35T | acT | acA | 20 | 20 | AY.3.1 | 0.001705 |
ORF1ab/nsp14A2-B | 35 | T35A | Act | Gct | 19 | 19 | B.1.1.7 | 0.000017 |
ORF1ab/nsp14A2-B | 35 | T35T | acT | acC | 16 | 16 | A | 0.006192 |
ORF1ab/nsp14A2-B | 35 | T35T | acT | acC | 9 | 15 | B.1.2 | 0.000079 |
ORF1ab/nsp14A2-B | 35 | T35T | acT | acA | 3 | 15 | B.1.2 | 0.000026 |
ORF1ab/nsp14A2-B | 35 | T35T | acT | acG | 3 | 15 | B.1.2 | 0.000026 |
ORF1ab/nsp14A2-B | 35 | T35N | aCt | aAt | 14 | 14 | AY.103 | 0.000087 |
ORF1ab/nsp14A2-B | 35 | T35T | acT | acC | 11 | 14 | AY.44 | 0.000067 |
ORF1ab/nsp14A2-B | 35 | T35T | acT | acA | 3 | 14 | AY.44 | 0.000018 |
ORF1ab/nsp14A2-B | 35 | T35I | aCt | aTt | 14 | 14 | B.1.1.7 | 0.000013 |
ORF1ab/nsp14A2-B | 35 | T35I | aCt | aTt | 13 | 13 | AY.25 | 0.000078 |
ORF1ab/nsp14A2-B | 35 | T35T | acT | acC | 10 | 12 | AY.4 | 0.000016 |
ORF1ab/nsp14A2-B | 35 | T35T | acT | acG | 1 | 12 | AY.4 | 0.000002 |
ORF1ab/nsp14A2-B | 35 | T35T | acT | acA | 1 | 12 | AY.4 | 0.000002 |
ORF1ab/nsp14A2-B | 35 | T35N | aCt | aAt | 10 | 10 | AY.121 | 0.001353 |
ORF1ab/nsp14A2-B | 35 | T35T | acT | acG | 9 | 9 | AY.47 | 0.00028 |
ORF1ab/nsp14A2-B | 35 | T35I | aCt | aTt | 9 | 9 | B.1.617.2 | 0.000034 |
ORF1ab/nsp14A2-B | 35 | T35T | acT | acC | 6 | 9 | B.1.617.2 | 0.000023 |
ORF1ab/nsp14A2-B | 35 | T35T | acT | acA | 2 | 9 | B.1.617.2 | 0.000008 |
ORF1ab/nsp14A2-B | 35 | T35T | acT | acG | 1 | 9 | B.1.617.2 | 0.000004 |
ORF1ab/nsp14A2-B | 35 | T35T | acT | acC | 8 | 9 | P.1 | 0.000126 |
ORF1ab/nsp14A2-B | 35 | T35T | acT | acA | 1 | 9 | P.1 | 0.000016 |
ORF1ab/nsp14A2-B | 35 | T35I | aCt | aTt | 8 | 8 | AY.4 | 0.000012 |
ORF1ab/nsp14A2-B | 35 | T35T | acT | acC | 8 | 8 | B.1.1 | 0.000145 |
ORF1ab/nsp14A2-B | 35 | T35del | ACT | --- | 8 | 8 | B.1.1.7 | 0.000007 |
ORF1ab/nsp14A2-B | 35 | T35V | ACt | GTt | 2 | 6 | 0.111111 | |
ORF1ab/nsp14A2-B | 35 | T35V | ACT | GTA | 2 | 6 | 0.111111 | |
ORF1ab/nsp14A2-B | 35 | T35V | ACT | GTC | 2 | 6 | 0.111111 | |
ORF1ab/nsp14A2-B | 35 | T35I | aCt | aTt | 2 | 6 | 0.111111 | |
ORF1ab/nsp14A2-B | 35 | T35I | aCT | aTC | 2 | 6 | 0.111111 | |
ORF1ab/nsp14A2-B | 35 | T35L | ACt | CTt | 2 | 6 | 0.111111 | |
ORF1ab/nsp14A2-B | 35 | T35I | aCT | aTA | 2 | 6 | 0.111111 | |
ORF1ab/nsp14A2-B | 35 | T35L | ACT | CTC | 2 | 6 | 0.111111 | |
ORF1ab/nsp14A2-B | 35 | T35L | ACT | CTA | 2 | 6 | 0.111111 | |
ORF1ab/nsp14A2-B | 35 | T35V | ACT | GTC | 2 | 6 | All | 0 |
ORF1ab/nsp14A2-B | 35 | T35L | ACT | CTA | 2 | 6 | All | 0 |
ORF1ab/nsp14A2-B | 35 | T35L | ACt | CTt | 2 | 6 | All | 0 |
ORF1ab/nsp14A2-B | 35 | T35V | ACt | GTt | 2 | 6 | All | 0 |
ORF1ab/nsp14A2-B | 35 | T35L | ACT | CTC | 2 | 6 | All | 0 |
ORF1ab/nsp14A2-B | 35 | T35V | ACT | GTA | 2 | 6 | All | 0 |
ORF1ab/nsp14A2-B | 35 | T35T | acT | acC | 4 | 6 | B.1.177 | 0.000053 |
ORF1ab/nsp14A2-B | 35 | T35T | acT | acA | 1 | 6 | B.1.177 | 0.000013 |
ORF1ab/nsp14A2-B | 35 | T35T | acT | acG | 1 | 6 | B.1.177 | 0.000013 |
ORF1ab/nsp14A2-B | 35 | T35T | acT | acA | 3 | 6 | C.37 | 0.000348 |
ORF1ab/nsp14A2-B | 35 | T35T | acT | acC | 3 | 6 | C.37 | 0.000348 |
ORF1ab/nsp14A2-B | 35 | T35K | aCT | aAA | 3 | 5 | All | 0.000001 |
ORF1ab/nsp14A2-B | 35 | T35P | Act | Cct | 3 | 5 | All | 0.000001 |
ORF1ab/nsp14A2-B | 35 | T35K | aCT | aAG | 2 | 5 | All | 0 |
ORF1ab/nsp14A2-B | 35 | T35P | AcT | CcC | 2 | 5 | All | 0 |
ORF1ab/nsp14A2-B | 35 | T35del | ACT | --- | 5 | 5 | AY.25 | 0.00003 |
ORF1ab/nsp14A2-B | 35 | T35T | acT | acC | 5 | 5 | AY.3 | 0.00005 |
ORF1ab/nsp14A2-B | 35 | T35T | acT | acG | 3 | 5 | AY.34 | 0.000291 |
ORF1ab/nsp14A2-B | 35 | T35T | acT | acC | 2 | 5 | AY.34 | 0.000194 |
ORF1ab/nsp14A2-B | 35 | T35I | aCt | aTt | 5 | 5 | B.1.2 | 0.000044 |
ORF1ab/nsp14A2-B | 35 | T35A | Act | Gct | 5 | 5 | B.1.2 | 0.000044 |
ORF1ab/nsp14A2-B | 35 | T35I | aCt | aTt | 5 | 5 | P.1.16 | 0.001871 |
ORF1ab/nsp14A2-B | 35 | T35K | aCT | aAA | 2 | 4 | 0.111111 | |
ORF1ab/nsp14A2-B | 35 | T35N | aCT | aAC | 2 | 4 | 0.111111 | |
ORF1ab/nsp14A2-B | 35 | T35K | aCT | aAG | 2 | 4 | 0.111111 | |
ORF1ab/nsp14A2-B | 35 | T35N | aCt | aAt | 2 | 4 | 0.111111 | |
ORF1ab/nsp14A2-B | 35 | T35T | acT | acC | 3 | 4 | AY.103 | 0.000019 |
ORF1ab/nsp14A2-B | 35 | T35T | acT | acA | 1 | 4 | AY.103 | 0.000006 |
ORF1ab/nsp14A2-B | 35 | T35N | aCt | aAt | 4 | 4 | AY.24 | 0.001724 |
ORF1ab/nsp14A2-B | 35 | T35del | ACT | --- | 4 | 4 | AY.43 | 0.000018 |
ORF1ab/nsp14A2-B | 35 | T35I | aCt | aTt | 3 | 3 | AY.117 | 0.000254 |
ORF1ab/nsp14A2-B | 35 | T35T | acT | acC | 3 | 3 | AY.29 | 0.000047 |
ORF1ab/nsp14A2-B | 35 | T35I | aCt | aTt | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp14A2-B | 35 | T35N | aCt | aAt | 3 | 3 | AY.95 | 0.002283 |
ORF1ab/nsp14A2-B | 35 | T35T | acT | acC | 3 | 3 | B.1.429 | 0.000071 |
ORF1ab/nsp14A2-B | 35 | T35N | aCt | aAt | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp14A2-B | 35 | T35A | Act | Gct | 3 | 3 | P.1 | 0.000047 |
ORF1ab/nsp14A2-B | 35 | T35T | acT | acA | 3 | 3 | P.1.16 | 0.001122 |
ORF1ab/nsp14A2-B | 35 | T35del1 | aCt | a-t | 2 | 2 | All | 0 |
ORF1ab/nsp14A2-B | 35 | T35S | Act | Tct | 1 | 2 | All | 0 |
ORF1ab/nsp14A2-B | 35 | T35S | aCt | aGt | 1 | 2 | All | 0 |
ORF1ab/nsp14A2-B | 35 | T35T | acT | acC | 1 | 2 | AY.102 | 0.000027 |
ORF1ab/nsp14A2-B | 35 | T35T | acT | acA | 1 | 2 | AY.102 | 0.000027 |
ORF1ab/nsp14A2-B | 35 | T35I | aCt | aTt | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp14A2-B | 35 | T35T | acT | acC | 1 | 2 | AY.119 | 0.000035 |
ORF1ab/nsp14A2-B | 35 | T35T | acT | acA | 1 | 2 | AY.119 | 0.000035 |
ORF1ab/nsp14A2-B | 35 | T35T | acT | acC | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp14A2-B | 35 | T35N | aCt | aAt | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp14A2-B | 35 | T35I | aCt | aTt | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp14A2-B | 35 | T35T | acT | acA | 2 | 2 | AY.33 | 0.000134 |
ORF1ab/nsp14A2-B | 35 | T35I | aCt | aTt | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp14A2-B | 35 | T35N | aCt | aAt | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp14A2-B | 35 | T35del | ACT | --- | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp14A2-B | 35 | T35del | ACT | --- | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp14A2-B | 35 | T35T | acT | acC | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp14A2-B | 35 | T35S | Act | Tct | 1 | 2 | AY.43 | 0.000004 |
ORF1ab/nsp14A2-B | 35 | T35S | aCt | aGt | 1 | 2 | AY.43 | 0.000004 |
ORF1ab/nsp14A2-B | 35 | T35N | aCt | aAt | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp14A2-B | 35 | T35A | Act | Gct | 2 | 2 | AY.54 | 0.000191 |
ORF1ab/nsp14A2-B | 35 | T35I | aCt | aTt | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp14A2-B | 35 | T35T | acT | acC | 2 | 2 | B.1.1.28 | 0.000622 |
ORF1ab/nsp14A2-B | 35 | T35T | acT | acC | 2 | 2 | B.1.1.306 | 0.000877 |
ORF1ab/nsp14A2-B | 35 | T35T | acT | acC | 1 | 2 | B.1.1.33 | 0.000421 |
ORF1ab/nsp14A2-B | 35 | T35T | acT | acA | 1 | 2 | B.1.1.33 | 0.000421 |
ORF1ab/nsp14A2-B | 35 | T35T | acT | acC | 2 | 2 | B.1.1.372 | 0.001377 |
ORF1ab/nsp14A2-B | 35 | T35T | acT | acC | 2 | 2 | B.1.1.50 | 0.001358 |
ORF1ab/nsp14A2-B | 35 | T35T | acT | acC | 2 | 2 | B.1.221 | 0.000142 |
ORF1ab/nsp14A2-B | 35 | T35T | acT | acA | 2 | 2 | B.1.241 | 0.001623 |
ORF1ab/nsp14A2-B | 35 | T35T | acT | acC | 2 | 2 | B.1.311 | 0.000549 |
ORF1ab/nsp14A2-B | 35 | T35T | acT | acG | 1 | 2 | B.1.596 | 0.000087 |
ORF1ab/nsp14A2-B | 35 | T35T | acT | acC | 1 | 2 | B.1.596 | 0.000087 |
ORF1ab/nsp14A2-B | 35 | T35A | Act | Gct | 2 | 2 | B.1.637 | 0.000146 |
ORF1ab/nsp14A2-B | 35 | T35I | aCt | aTt | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp14A2-B | 35 | T35T | acT | acC | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp14A2-B | 35 | T35T | acT | acA | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp14A2-B | 35 | T35I | aCt | aTt | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp14A2-B | 35 | T35T | acT | acC | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp14A2-B | 35 | T35T | acT | acC | 1 | 1 | AY.23.1 | 0.000417 |
ORF1ab/nsp14A2-B | 35 | T35A | Act | Gct | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp14A2-B | 35 | T35K | aCT | aAA | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp14A2-B | 35 | T35T | acT | acA | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp14A2-B | 35 | T35N | aCt | aAt | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp14A2-B | 35 | T35I | aCt | aTt | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp14A2-B | 35 | T35T | acT | acC | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp14A2-B | 35 | T35del | ACT | --- | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp14A2-B | 35 | T35N | aCt | aAt | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp14A2-B | 35 | T35T | acT | acC | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp14A2-B | 35 | T35P | Act | Cct | 1 | 1 | AY.37 | 0.000316 |
ORF1ab/nsp14A2-B | 35 | T35P | AcT | CcC | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp14A2-B | 35 | T35T | acT | acC | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp14A2-B | 35 | T35I | aCt | aTt | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp14A2-B | 35 | T35T | acT | acC | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp14A2-B | 35 | T35I | aCt | aTt | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp14A2-B | 35 | T35A | Act | Gct | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp14A2-B | 35 | T35P | Act | Cct | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp14A2-B | 35 | T35T | acT | acC | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp14A2-B | 35 | T35T | acT | acC | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp14A2-B | 35 | T35I | aCt | aTt | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp14A2-B | 35 | T35T | acT | acA | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp14A2-B | 35 | T35del | ACT | --- | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp14A2-B | 35 | T35T | acT | acA | 1 | 1 | AY.58 | 0.000907 |
ORF1ab/nsp14A2-B | 35 | T35I | aCt | aTt | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp14A2-B | 35 | T35T | acT | acC | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp14A2-B | 35 | T35del | ACT | --- | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp14A2-B | 35 | T35T | acT | acC | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp14A2-B | 35 | T35T | acT | acC | 1 | 1 | AY.79 | 0.001211 |
ORF1ab/nsp14A2-B | 35 | T35T | acT | acC | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp14A2-B | 35 | T35T | acT | acC | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp14A2-B | 35 | T35T | acT | acG | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp14A2-B | 35 | T35I | aCt | aTt | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp14A2-B | 35 | T35T | acT | acC | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp14A2-B | 35 | T35I | aCt | aTt | 1 | 1 | AY.99.1 | 0.001553 |
ORF1ab/nsp14A2-B | 35 | T35I | aCT | aTC | 1 | 1 | B | 0.000128 |
ORF1ab/nsp14A2-B | 35 | T35N | aCt | aAt | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp14A2-B | 35 | T35I | aCt | aTt | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp14A2-B | 35 | T35A | Act | Gct | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp14A2-B | 35 | T35P | AcT | CcC | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp14A2-B | 35 | T35del | ACT | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp14A2-B | 35 | T35T | acT | acC | 1 | 1 | B.1.1.10 | 0.001115 |
ORF1ab/nsp14A2-B | 35 | T35T | acT | acC | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp14A2-B | 35 | T35T | acT | acC | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp14A2-B | 35 | T35I | aCt | aTt | 1 | 1 | B.1.1.253 | 0.002506 |
ORF1ab/nsp14A2-B | 35 | T35del | ACT | --- | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp14A2-B | 35 | T35T | acT | acC | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp14A2-B | 35 | T35del1 | aCt | a-t | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp14A2-B | 35 | T35I | aCt | aTt | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp14A2-B | 35 | T35N | aCt | aAt | 1 | 1 | B.1.160.16 | 0.000929 |
ORF1ab/nsp14A2-B | 35 | T35P | Act | Cct | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp14A2-B | 35 | T35del | ACT | --- | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp14A2-B | 35 | T35I | aCt | aTt | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp14A2-B | 35 | T35del | ACT | --- | 1 | 1 | B.1.177.19 | 0.001431 |
ORF1ab/nsp14A2-B | 35 | T35T | acT | acC | 1 | 1 | B.1.177.32 | 0.00135 |
ORF1ab/nsp14A2-B | 35 | T35del | ACT | --- | 1 | 1 | B.1.177.51 | 0.004566 |
ORF1ab/nsp14A2-B | 35 | T35del | ACT | --- | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp14A2-B | 35 | T35I | aCt | aTt | 1 | 1 | B.1.177.58 | 0.001332 |
ORF1ab/nsp14A2-B | 35 | T35del | ACT | --- | 1 | 1 | B.1.177.68 | 0.015152 |
ORF1ab/nsp14A2-B | 35 | T35I | aCt | aTt | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp14A2-B | 35 | T35T | acT | acA | 1 | 1 | B.1.177.75 | 0.001041 |
ORF1ab/nsp14A2-B | 35 | T35T | acT | acC | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp14A2-B | 35 | T35I | aCt | aTt | 1 | 1 | B.1.194 | 0.04 |
ORF1ab/nsp14A2-B | 35 | T35T | acT | acC | 1 | 1 | B.1.223 | 0.002778 |
ORF1ab/nsp14A2-B | 35 | T35T | acT | acC | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp14A2-B | 35 | T35I | aCt | aTt | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp14A2-B | 35 | T35T | acT | acC | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp14A2-B | 35 | T35T | acT | acC | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp14A2-B | 35 | T35T | acT | acC | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp14A2-B | 35 | T35T | acT | acC | 1 | 1 | B.1.36.38 | 0.001642 |
ORF1ab/nsp14A2-B | 35 | T35T | acT | acG | 1 | 1 | B.1.36.39 | 0.002217 |
ORF1ab/nsp14A2-B | 35 | T35T | acT | acC | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp14A2-B | 35 | T35I | aCt | aTt | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp14A2-B | 35 | T35del | ACT | --- | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp14A2-B | 35 | T35T | acT | acC | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp14A2-B | 35 | T35A | Act | Gct | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp14A2-B | 35 | T35del1 | aCt | a-t | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp14A2-B | 35 | T35I | aCt | aTt | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp14A2-B | 35 | T35del | ACT | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp14A2-B | 35 | T35T | acT | acA | 1 | 1 | B.1.618 | 0.004032 |
ORF1ab/nsp14A2-B | 35 | T35T | acT | acC | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp14A2-B | 35 | T35A | Act | Gct | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp14A2-B | 35 | T35T | acT | acA | 1 | 1 | B.12 | 0.00641 |
ORF1ab/nsp14A2-B | 35 | T35I | aCt | aTt | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp14A2-B | 35 | T35I | aCt | aTt | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp14A2-B | 35 | T35N | aCt | aAt | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp14A2-B | 35 | T35del | ACT | --- | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp14A2-B | 35 | T35I | aCt | aTt | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp14A2-B | 35 | T35A | Act | Gct | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp14A2-B | 35 | T35T | acT | acC | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp14A2-B | 35 | T35del | ACT | --- | 1 | 1 | Q.2 | 0.000613 |
ORF1ab/nsp14A2-B | 35 | T35I | aCt | aTt | 1 | 1 | R.1 | 0.00009 |
ORF1ab/nsp14A2-B | 35 | T35T | acT | acA | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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