CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp14A2-B : CodonNum = 35

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp14A2-B35T35TT5960TsynacTacC4804000.83333318142-18144
ORF1ab/nsp14A2-B35T35TT5960TsynacTacA480560.11666718142-18144
ORF1ab/nsp14A2-B35T35TT5960TsynacTacG480240.0518142-18144
ORF1ab/nsp14A2-B35T35IT5960InonsynaCtaTt98930.9489818142-18144
ORF1ab/nsp14A2-B35T35IT5960InonsynaCTaTC9830.030612218142-18144
ORF1ab/nsp14A2-B35T35IT5960InonsynaCTaTA9820.020408218142-18144
ORF1ab/nsp14A2-B35T35NT5960NnonsynaCtaAt49470.95918418142-18144
ORF1ab/nsp14A2-B35T35NT5960NnonsynaCTaAC4920.040816318142-18144
ORF1ab/nsp14A2-B35T35AT5960AnonsynActGct3737118142-18144
ORF1ab/nsp14A2-B35T35delT5960deldelACT---3535118142-18144
ORF1ab/nsp14A2-B35T35VT5960VnonsynACTGTC620.33333318142-18144
ORF1ab/nsp14A2-B35T35LT5960LnonsynACTCTA620.33333318142-18144
ORF1ab/nsp14A2-B35T35LT5960LnonsynACTCTC620.33333318142-18144
ORF1ab/nsp14A2-B35T35LT5960LnonsynACtCTt620.33333318142-18144
ORF1ab/nsp14A2-B35T35VT5960VnonsynACTGTA620.33333318142-18144
ORF1ab/nsp14A2-B35T35VT5960VnonsynACtGTt620.33333318142-18144
ORF1ab/nsp14A2-B35T35PT5960PnonsynActCct530.618142-18144
ORF1ab/nsp14A2-B35T35KT5960KnonsynaCTaAA530.618142-18144
ORF1ab/nsp14A2-B35T35PT5960PnonsynAcTCcC520.418142-18144
ORF1ab/nsp14A2-B35T35KT5960KnonsynaCTaAG520.418142-18144
ORF1ab/nsp14A2-B35T35del1T5960del1delaCta-t22118142-18144
ORF1ab/nsp14A2-B35T35ST5960SnonsynaCtaGt210.518142-18144
ORF1ab/nsp14A2-B35T35ST5960SnonsynActTct210.518142-18144

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp14A2-B35T35TacTacC400480All0.000077
ORF1ab/nsp14A2-B35T35TacTacA56480All0.000011
ORF1ab/nsp14A2-B35T35TacTacG24480All0.000005
ORF1ab/nsp14A2-B35T35TacTacC164164B.1.1.1380.993939
ORF1ab/nsp14A2-B35T35IaCtaTt9398All0.000018
ORF1ab/nsp14A2-B35T35IaCTaTC398All0.000001
ORF1ab/nsp14A2-B35T35IaCTaTA298All0
ORF1ab/nsp14A2-B35T35NaCtaAt4749All0.000009
ORF1ab/nsp14A2-B35T35NaCTaAC249All0
ORF1ab/nsp14A2-B35T35TacTacC4043B.1.1.70.000036
ORF1ab/nsp14A2-B35T35TacTacG343B.1.1.70.000003
ORF1ab/nsp14A2-B35T35AActGct3737All0.000007
ORF1ab/nsp14A2-B35T35delACT---3535All0.000007
ORF1ab/nsp14A2-B35T35TacTacC2932B.10.000266
ORF1ab/nsp14A2-B35T35TacTacA332B.10.000027
ORF1ab/nsp14A2-B35T35TacTacC2525AY.250.00015
ORF1ab/nsp14A2-B35T35TacTacA2020AY.3.10.001705
ORF1ab/nsp14A2-B35T35AActGct1919B.1.1.70.000017
ORF1ab/nsp14A2-B35T35TacTacC1616A0.006192
ORF1ab/nsp14A2-B35T35TacTacC915B.1.20.000079
ORF1ab/nsp14A2-B35T35TacTacA315B.1.20.000026
ORF1ab/nsp14A2-B35T35TacTacG315B.1.20.000026
ORF1ab/nsp14A2-B35T35NaCtaAt1414AY.1030.000087
ORF1ab/nsp14A2-B35T35TacTacC1114AY.440.000067
ORF1ab/nsp14A2-B35T35TacTacA314AY.440.000018
ORF1ab/nsp14A2-B35T35IaCtaTt1414B.1.1.70.000013
ORF1ab/nsp14A2-B35T35IaCtaTt1313AY.250.000078
ORF1ab/nsp14A2-B35T35TacTacC1012AY.40.000016
ORF1ab/nsp14A2-B35T35TacTacG112AY.40.000002
ORF1ab/nsp14A2-B35T35TacTacA112AY.40.000002
ORF1ab/nsp14A2-B35T35NaCtaAt1010AY.1210.001353
ORF1ab/nsp14A2-B35T35TacTacG99AY.470.00028
ORF1ab/nsp14A2-B35T35IaCtaTt99B.1.617.20.000034
ORF1ab/nsp14A2-B35T35TacTacC69B.1.617.20.000023
ORF1ab/nsp14A2-B35T35TacTacA29B.1.617.20.000008
ORF1ab/nsp14A2-B35T35TacTacG19B.1.617.20.000004
ORF1ab/nsp14A2-B35T35TacTacC89P.10.000126
ORF1ab/nsp14A2-B35T35TacTacA19P.10.000016
ORF1ab/nsp14A2-B35T35IaCtaTt88AY.40.000012
ORF1ab/nsp14A2-B35T35TacTacC88B.1.10.000145
ORF1ab/nsp14A2-B35T35delACT---88B.1.1.70.000007
ORF1ab/nsp14A2-B35T35VACtGTt260.111111
ORF1ab/nsp14A2-B35T35VACTGTA260.111111
ORF1ab/nsp14A2-B35T35VACTGTC260.111111
ORF1ab/nsp14A2-B35T35IaCtaTt260.111111
ORF1ab/nsp14A2-B35T35IaCTaTC260.111111
ORF1ab/nsp14A2-B35T35LACtCTt260.111111
ORF1ab/nsp14A2-B35T35IaCTaTA260.111111
ORF1ab/nsp14A2-B35T35LACTCTC260.111111
ORF1ab/nsp14A2-B35T35LACTCTA260.111111
ORF1ab/nsp14A2-B35T35VACTGTC26All0
ORF1ab/nsp14A2-B35T35LACTCTA26All0
ORF1ab/nsp14A2-B35T35LACtCTt26All0
ORF1ab/nsp14A2-B35T35VACtGTt26All0
ORF1ab/nsp14A2-B35T35LACTCTC26All0
ORF1ab/nsp14A2-B35T35VACTGTA26All0
ORF1ab/nsp14A2-B35T35TacTacC46B.1.1770.000053
ORF1ab/nsp14A2-B35T35TacTacA16B.1.1770.000013
ORF1ab/nsp14A2-B35T35TacTacG16B.1.1770.000013
ORF1ab/nsp14A2-B35T35TacTacA36C.370.000348
ORF1ab/nsp14A2-B35T35TacTacC36C.370.000348
ORF1ab/nsp14A2-B35T35KaCTaAA35All0.000001
ORF1ab/nsp14A2-B35T35PActCct35All0.000001
ORF1ab/nsp14A2-B35T35KaCTaAG25All0
ORF1ab/nsp14A2-B35T35PAcTCcC25All0
ORF1ab/nsp14A2-B35T35delACT---55AY.250.00003
ORF1ab/nsp14A2-B35T35TacTacC55AY.30.00005
ORF1ab/nsp14A2-B35T35TacTacG35AY.340.000291
ORF1ab/nsp14A2-B35T35TacTacC25AY.340.000194
ORF1ab/nsp14A2-B35T35IaCtaTt55B.1.20.000044
ORF1ab/nsp14A2-B35T35AActGct55B.1.20.000044
ORF1ab/nsp14A2-B35T35IaCtaTt55P.1.160.001871
ORF1ab/nsp14A2-B35T35KaCTaAA240.111111
ORF1ab/nsp14A2-B35T35NaCTaAC240.111111
ORF1ab/nsp14A2-B35T35KaCTaAG240.111111
ORF1ab/nsp14A2-B35T35NaCtaAt240.111111
ORF1ab/nsp14A2-B35T35TacTacC34AY.1030.000019
ORF1ab/nsp14A2-B35T35TacTacA14AY.1030.000006
ORF1ab/nsp14A2-B35T35NaCtaAt44AY.240.001724
ORF1ab/nsp14A2-B35T35delACT---44AY.430.000018
ORF1ab/nsp14A2-B35T35IaCtaTt33AY.1170.000254
ORF1ab/nsp14A2-B35T35TacTacC33AY.290.000047
ORF1ab/nsp14A2-B35T35IaCtaTt33AY.440.000018
ORF1ab/nsp14A2-B35T35NaCtaAt33AY.950.002283
ORF1ab/nsp14A2-B35T35TacTacC33B.1.4290.000071
ORF1ab/nsp14A2-B35T35NaCtaAt33B.1.617.20.000011
ORF1ab/nsp14A2-B35T35AActGct33P.10.000047
ORF1ab/nsp14A2-B35T35TacTacA33P.1.160.001122
ORF1ab/nsp14A2-B35T35del1aCta-t22All0
ORF1ab/nsp14A2-B35T35SActTct12All0
ORF1ab/nsp14A2-B35T35SaCtaGt12All0
ORF1ab/nsp14A2-B35T35TacTacC12AY.1020.000027
ORF1ab/nsp14A2-B35T35TacTacA12AY.1020.000027
ORF1ab/nsp14A2-B35T35IaCtaTt22AY.1030.000012
ORF1ab/nsp14A2-B35T35TacTacC12AY.1190.000035
ORF1ab/nsp14A2-B35T35TacTacA12AY.1190.000035
ORF1ab/nsp14A2-B35T35TacTacC22AY.230.000139
ORF1ab/nsp14A2-B35T35NaCtaAt22AY.250.000012
ORF1ab/nsp14A2-B35T35IaCtaTt22AY.30.00002
ORF1ab/nsp14A2-B35T35TacTacA22AY.330.000134
ORF1ab/nsp14A2-B35T35IaCtaTt22AY.390.000049
ORF1ab/nsp14A2-B35T35NaCtaAt22AY.40.000003
ORF1ab/nsp14A2-B35T35delACT---22AY.40.000003
ORF1ab/nsp14A2-B35T35delACT---22AY.4.50.000215
ORF1ab/nsp14A2-B35T35TacTacC22AY.430.000009
ORF1ab/nsp14A2-B35T35SActTct12AY.430.000004
ORF1ab/nsp14A2-B35T35SaCtaGt12AY.430.000004
ORF1ab/nsp14A2-B35T35NaCtaAt22AY.450.000243
ORF1ab/nsp14A2-B35T35AActGct22AY.540.000191
ORF1ab/nsp14A2-B35T35IaCtaTt22B.1.10.000036
ORF1ab/nsp14A2-B35T35TacTacC22B.1.1.280.000622
ORF1ab/nsp14A2-B35T35TacTacC22B.1.1.3060.000877
ORF1ab/nsp14A2-B35T35TacTacC12B.1.1.330.000421
ORF1ab/nsp14A2-B35T35TacTacA12B.1.1.330.000421
ORF1ab/nsp14A2-B35T35TacTacC22B.1.1.3720.001377
ORF1ab/nsp14A2-B35T35TacTacC22B.1.1.500.001358
ORF1ab/nsp14A2-B35T35TacTacC22B.1.2210.000142
ORF1ab/nsp14A2-B35T35TacTacA22B.1.2410.001623
ORF1ab/nsp14A2-B35T35TacTacC22B.1.3110.000549
ORF1ab/nsp14A2-B35T35TacTacG12B.1.5960.000087
ORF1ab/nsp14A2-B35T35TacTacC12B.1.5960.000087
ORF1ab/nsp14A2-B35T35AActGct22B.1.6370.000146
ORF1ab/nsp14A2-B35T35IaCtaTt11AY.1000.000046
ORF1ab/nsp14A2-B35T35TacTacC11AY.1200.000037
ORF1ab/nsp14A2-B35T35TacTacA11AY.130.000161
ORF1ab/nsp14A2-B35T35IaCtaTt11AY.16.10.00047
ORF1ab/nsp14A2-B35T35TacTacC11AY.200.000039
ORF1ab/nsp14A2-B35T35TacTacC11AY.23.10.000417
ORF1ab/nsp14A2-B35T35AActGct11AY.250.000006
ORF1ab/nsp14A2-B35T35KaCTaAA11AY.250.000006
ORF1ab/nsp14A2-B35T35TacTacA11AY.260.000028
ORF1ab/nsp14A2-B35T35NaCtaAt11AY.290.000016
ORF1ab/nsp14A2-B35T35IaCtaTt11AY.290.000016
ORF1ab/nsp14A2-B35T35TacTacC11AY.29.10.000221
ORF1ab/nsp14A2-B35T35delACT---11AY.340.000097
ORF1ab/nsp14A2-B35T35NaCtaAt11AY.340.000097
ORF1ab/nsp14A2-B35T35TacTacC11AY.360.000148
ORF1ab/nsp14A2-B35T35PActCct11AY.370.000316
ORF1ab/nsp14A2-B35T35PAcTCcC11AY.40.000002
ORF1ab/nsp14A2-B35T35TacTacC11AY.4.20.000022
ORF1ab/nsp14A2-B35T35IaCtaTt11AY.4.50.000107
ORF1ab/nsp14A2-B35T35TacTacC11AY.420.00004
ORF1ab/nsp14A2-B35T35IaCtaTt11AY.430.000004
ORF1ab/nsp14A2-B35T35AActGct11AY.440.000006
ORF1ab/nsp14A2-B35T35PActCct11AY.440.000006
ORF1ab/nsp14A2-B35T35TacTacC11AY.450.000122
ORF1ab/nsp14A2-B35T35TacTacC11AY.460.000104
ORF1ab/nsp14A2-B35T35IaCtaTt11AY.50.000021
ORF1ab/nsp14A2-B35T35TacTacA11AY.50.000021
ORF1ab/nsp14A2-B35T35delACT---11AY.520.000814
ORF1ab/nsp14A2-B35T35TacTacA11AY.580.000907
ORF1ab/nsp14A2-B35T35IaCtaTt11AY.610.000105
ORF1ab/nsp14A2-B35T35TacTacC11AY.750.000056
ORF1ab/nsp14A2-B35T35delACT---11AY.750.000056
ORF1ab/nsp14A2-B35T35TacTacC11AY.75.10.00018
ORF1ab/nsp14A2-B35T35TacTacC11AY.790.001211
ORF1ab/nsp14A2-B35T35TacTacC11AY.9.20.000037
ORF1ab/nsp14A2-B35T35TacTacC11AY.910.00073
ORF1ab/nsp14A2-B35T35TacTacG11AY.950.000761
ORF1ab/nsp14A2-B35T35IaCtaTt11AY.98.10.000048
ORF1ab/nsp14A2-B35T35TacTacC11AY.98.10.000048
ORF1ab/nsp14A2-B35T35IaCtaTt11AY.99.10.001553
ORF1ab/nsp14A2-B35T35IaCTaTC11B0.000128
ORF1ab/nsp14A2-B35T35NaCtaAt11B.10.000009
ORF1ab/nsp14A2-B35T35IaCtaTt11B.10.000009
ORF1ab/nsp14A2-B35T35AActGct11B.10.000009
ORF1ab/nsp14A2-B35T35PAcTCcC11B.1.10.000018
ORF1ab/nsp14A2-B35T35delACT---11B.1.10.000018
ORF1ab/nsp14A2-B35T35TacTacC11B.1.1.100.001115
ORF1ab/nsp14A2-B35T35TacTacC11B.1.1.2140.000055
ORF1ab/nsp14A2-B35T35TacTacC11B.1.1.2160.00089
ORF1ab/nsp14A2-B35T35IaCtaTt11B.1.1.2530.002506
ORF1ab/nsp14A2-B35T35delACT---11B.1.1.5190.00004
ORF1ab/nsp14A2-B35T35TacTacC11B.1.1.5190.00004
ORF1ab/nsp14A2-B35T35del1aCta-t11B.1.1.70.000001
ORF1ab/nsp14A2-B35T35IaCtaTt11B.1.1600.000031
ORF1ab/nsp14A2-B35T35NaCtaAt11B.1.160.160.000929
ORF1ab/nsp14A2-B35T35PActCct11B.1.1770.000013
ORF1ab/nsp14A2-B35T35delACT---11B.1.1770.000013
ORF1ab/nsp14A2-B35T35IaCtaTt11B.1.1770.000013
ORF1ab/nsp14A2-B35T35delACT---11B.1.177.190.001431
ORF1ab/nsp14A2-B35T35TacTacC11B.1.177.320.00135
ORF1ab/nsp14A2-B35T35delACT---11B.1.177.510.004566
ORF1ab/nsp14A2-B35T35delACT---11B.1.177.570.000281
ORF1ab/nsp14A2-B35T35IaCtaTt11B.1.177.580.001332
ORF1ab/nsp14A2-B35T35delACT---11B.1.177.680.015152
ORF1ab/nsp14A2-B35T35IaCtaTt11B.1.177.730.000566
ORF1ab/nsp14A2-B35T35TacTacA11B.1.177.750.001041
ORF1ab/nsp14A2-B35T35TacTacC11B.1.177.860.000183
ORF1ab/nsp14A2-B35T35IaCtaTt11B.1.1940.04
ORF1ab/nsp14A2-B35T35TacTacC11B.1.2230.002778
ORF1ab/nsp14A2-B35T35TacTacC11B.1.2580.000067
ORF1ab/nsp14A2-B35T35IaCtaTt11B.1.3510.00003
ORF1ab/nsp14A2-B35T35TacTacC11B.1.3510.00003
ORF1ab/nsp14A2-B35T35TacTacC11B.1.360.000146
ORF1ab/nsp14A2-B35T35TacTacC11B.1.36.290.000517
ORF1ab/nsp14A2-B35T35TacTacC11B.1.36.380.001642
ORF1ab/nsp14A2-B35T35TacTacG11B.1.36.390.002217
ORF1ab/nsp14A2-B35T35TacTacC11B.1.4270.00005
ORF1ab/nsp14A2-B35T35IaCtaTt11B.1.5260.000024
ORF1ab/nsp14A2-B35T35delACT---11B.1.5610.000397
ORF1ab/nsp14A2-B35T35TacTacC11B.1.5820.000491
ORF1ab/nsp14A2-B35T35AActGct11B.1.5960.000087
ORF1ab/nsp14A2-B35T35del1aCta-t11B.1.617.10.000129
ORF1ab/nsp14A2-B35T35IaCtaTt11B.1.617.10.000129
ORF1ab/nsp14A2-B35T35delACT---11B.1.617.20.000004
ORF1ab/nsp14A2-B35T35TacTacA11B.1.6180.004032
ORF1ab/nsp14A2-B35T35TacTacC11B.1.6210.000089
ORF1ab/nsp14A2-B35T35AActGct11B.1.621.10.000506
ORF1ab/nsp14A2-B35T35TacTacA11B.120.00641
ORF1ab/nsp14A2-B35T35IaCtaTt11C.370.000116
ORF1ab/nsp14A2-B35T35IaCtaTt11D.20.000075
ORF1ab/nsp14A2-B35T35NaCtaAt11P.10.000016
ORF1ab/nsp14A2-B35T35delACT---11P.10.000016
ORF1ab/nsp14A2-B35T35IaCtaTt11P.10.000016
ORF1ab/nsp14A2-B35T35AActGct11P.1.120.000484
ORF1ab/nsp14A2-B35T35TacTacC11P.1.150.000232
ORF1ab/nsp14A2-B35T35delACT---11Q.20.000613
ORF1ab/nsp14A2-B35T35IaCtaTt11R.10.00009
ORF1ab/nsp14A2-B35T35TacTacA11R.10.00009