CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp14A2-B : CodonNum = 338

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp14A2-B338I338II6263IsynatTatC6246130.98237219051-19053
ORF1ab/nsp14A2-B338I338II6263IsynatTatA624110.017628219051-19053
ORF1ab/nsp14A2-B338I338VI6263VnonsynAttGtt174174119051-19053
ORF1ab/nsp14A2-B338I338LI6263LnonsynAttCtt130130119051-19053
ORF1ab/nsp14A2-B338I338TI6263TnonsynaTtaCt84830.98809519051-19053
ORF1ab/nsp14A2-B338I338TI6263TnonsynaTTaCC8410.011904819051-19053
ORF1ab/nsp14A2-B338I338delI6263deldelATT---1919119051-19053
ORF1ab/nsp14A2-B338I338MI6263MnonsynatTatG44119051-19053
ORF1ab/nsp14A2-B338I338NI6263NnonsynaTtaAt11119051-19053
ORF1ab/nsp14A2-B338I338del1I6263del1delAtt-tt11119051-19053
ORF1ab/nsp14A2-B338I338PI6263PnonsynATtCCt11119051-19053

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp14A2-B338I338IatTatC613624All0.000117
ORF1ab/nsp14A2-B338I338IatTatA11624All0.000002
ORF1ab/nsp14A2-B338I338IatTatC206206AY.40.000321
ORF1ab/nsp14A2-B338I338VAttGtt174174All0.000033
ORF1ab/nsp14A2-B338I338IatTatC149149C.1.20.634043
ORF1ab/nsp14A2-B338I338LAttCtt130130All0.000025
ORF1ab/nsp14A2-B338I338LAttCtt119119B.1.1.70.000107
ORF1ab/nsp14A2-B338I338IatTatC106106AY.4.20.002299
ORF1ab/nsp14A2-B338I338TaTtaCt8384All0.000016
ORF1ab/nsp14A2-B338I338TaTTaCC184All0
ORF1ab/nsp14A2-B338I338VAttGtt7373AY.40.000114
ORF1ab/nsp14A2-B338I338TaTtaCt4747AY.30.000467
ORF1ab/nsp14A2-B338I338IatTatC3030B.1.36.80.03
ORF1ab/nsp14A2-B338I338IatTatC2323C.36.3.10.0625
ORF1ab/nsp14A2-B338I338delATT---1919All0.000004
ORF1ab/nsp14A2-B338I338IatTatC1919B.1.214.20.011391
ORF1ab/nsp14A2-B338I338IatTatC1818B.1.36.290.009312
ORF1ab/nsp14A2-B338I338VAttGtt1717AY.250.000102
ORF1ab/nsp14A2-B338I338VAttGtt1616B.1.5260.000376
ORF1ab/nsp14A2-B338I338IatTatC1314B.1.1.70.000012
ORF1ab/nsp14A2-B338I338IatTatA114B.1.1.70.000001
ORF1ab/nsp14A2-B338I338TaTtaCt1414B.1.5260.000329
ORF1ab/nsp14A2-B338I338VAttGtt1313B.1.1.70.000012
ORF1ab/nsp14A2-B338I338delATT---1212B.1.1.70.000011
ORF1ab/nsp14A2-B338I338LAttCtt99B.1.4090.007031
ORF1ab/nsp14A2-B338I338IatTatC88B.1.617.20.00003
ORF1ab/nsp14A2-B338I338VAttGtt77AY.90.000473
ORF1ab/nsp14A2-B338I338VAttGtt66AY.430.000027
ORF1ab/nsp14A2-B338I338VAttGtt66B.1.617.20.000023
ORF1ab/nsp14A2-B338I338IatTatC55B.1.10.000091
ORF1ab/nsp14A2-B338I338MatTatG44All0.000001
ORF1ab/nsp14A2-B338I338TaTtaCt44B.1.617.20.000015
ORF1ab/nsp14A2-B338I338IatTatA44P.10.000063
ORF1ab/nsp14A2-B338I338VAttGtt33AY.1020.00008
ORF1ab/nsp14A2-B338I338IatTatC33AY.1030.000019
ORF1ab/nsp14A2-B338I338VAttGtt33AY.1200.000112
ORF1ab/nsp14A2-B338I338IatTatC33AY.200.000117
ORF1ab/nsp14A2-B338I338IatTatC33AY.39.10.000119
ORF1ab/nsp14A2-B338I338TaTtaCt33AY.40.000005
ORF1ab/nsp14A2-B338I338IatTatA23AY.430.000009
ORF1ab/nsp14A2-B338I338IatTatC13AY.430.000004
ORF1ab/nsp14A2-B338I338IatTatC33AY.450.000365
ORF1ab/nsp14A2-B338I338MatTatG33B.1.1.2220.000612
ORF1ab/nsp14A2-B338I338IatTatC33B.1.4620.021739
ORF1ab/nsp14A2-B338I338IatTatC33B.1.5250.000339
ORF1ab/nsp14A2-B338I338IatTatC22AY.1020.000053
ORF1ab/nsp14A2-B338I338VAttGtt22AY.1060.00067
ORF1ab/nsp14A2-B338I338VAttGtt22AY.200.000078
ORF1ab/nsp14A2-B338I338VAttGtt22AY.470.000062
ORF1ab/nsp14A2-B338I338IatTatA22AY.50.000041
ORF1ab/nsp14A2-B338I338VAttGtt22B.1.10.000036
ORF1ab/nsp14A2-B338I338VAttGtt22B.1.1770.000026
ORF1ab/nsp14A2-B338I338IatTatC22B.1.1770.000026
ORF1ab/nsp14A2-B338I338TaTtaCt22B.1.2340.000264
ORF1ab/nsp14A2-B338I338VAttGtt22B.1.2670.037037
ORF1ab/nsp14A2-B338I338TaTtaCt22B.1.4290.000047
ORF1ab/nsp14A2-B338I338VAttGtt22B.1.5950.000522
ORF1ab/nsp14A2-B338I338IatTatC22C.370.000232
ORF1ab/nsp14A2-B338I338NaTtaAt110.055556
ORF1ab/nsp14A2-B338I338NaTtaAt11All0
ORF1ab/nsp14A2-B338I338del1Att-tt11All0
ORF1ab/nsp14A2-B338I338PATtCCt11All0
ORF1ab/nsp14A2-B338I338TaTtaCt11AY.1030.000006
ORF1ab/nsp14A2-B338I338IatTatC11AY.1050.000643
ORF1ab/nsp14A2-B338I338IatTatC11AY.1130.000142
ORF1ab/nsp14A2-B338I338VAttGtt11AY.1170.000085
ORF1ab/nsp14A2-B338I338VAttGtt11AY.230.00007
ORF1ab/nsp14A2-B338I338IatTatA11AY.250.000006
ORF1ab/nsp14A2-B338I338TaTtaCt11AY.250.000006
ORF1ab/nsp14A2-B338I338VAttGtt11AY.260.000028
ORF1ab/nsp14A2-B338I338VAttGtt11AY.270.000065
ORF1ab/nsp14A2-B338I338TaTtaCt11AY.3.10.000085
ORF1ab/nsp14A2-B338I338VAttGtt11AY.330.000067
ORF1ab/nsp14A2-B338I338LAttCtt11AY.370.000316
ORF1ab/nsp14A2-B338I338VAttGtt11AY.390.000025
ORF1ab/nsp14A2-B338I338delATT---11AY.40.000002
ORF1ab/nsp14A2-B338I338delATT---11AY.430.000004
ORF1ab/nsp14A2-B338I338IatTatC11AY.440.000006
ORF1ab/nsp14A2-B338I338TaTtaCt11AY.75.10.00018
ORF1ab/nsp14A2-B338I338VAttGtt11AY.75.10.00018
ORF1ab/nsp14A2-B338I338VAttGtt11AY.860.00083
ORF1ab/nsp14A2-B338I338VAttGtt11B.10.000009
ORF1ab/nsp14A2-B338I338IatTatC11B.10.000009
ORF1ab/nsp14A2-B338I338MatTatG11B.10.000009
ORF1ab/nsp14A2-B338I338IatTatC11B.1.1.10.000327
ORF1ab/nsp14A2-B338I338TaTtaCt11B.1.1.1070.032258
ORF1ab/nsp14A2-B338I338delATT---11B.1.1.3060.000438
ORF1ab/nsp14A2-B338I338IatTatC11B.1.1.3720.000689
ORF1ab/nsp14A2-B338I338TaTtaCt11B.1.1.70.000001
ORF1ab/nsp14A2-B338I338VAttGtt11B.1.1600.000031
ORF1ab/nsp14A2-B338I338delATT---11B.1.1770.000013
ORF1ab/nsp14A2-B338I338VAttGtt11B.1.177.40.000211
ORF1ab/nsp14A2-B338I338VAttGtt11B.1.177.440.000519
ORF1ab/nsp14A2-B338I338TaTtaCt11B.1.177.70.000165
ORF1ab/nsp14A2-B338I338VAttGtt11B.1.20.000009
ORF1ab/nsp14A2-B338I338IatTatC11B.1.20.000009
ORF1ab/nsp14A2-B338I338VAttGtt11B.1.2210.000071
ORF1ab/nsp14A2-B338I338TaTtaCt11B.1.2210.000071
ORF1ab/nsp14A2-B338I338TaTtaCt11B.1.2430.00007
ORF1ab/nsp14A2-B338I338IatTatC11B.1.3110.000275
ORF1ab/nsp14A2-B338I338IatTatC11B.1.360.000146
ORF1ab/nsp14A2-B338I338PATtCCt11B.1.36.10.00114
ORF1ab/nsp14A2-B338I338delATT---11B.1.4150.014286
ORF1ab/nsp14A2-B338I338del1Att-tt11B.1.5610.000397
ORF1ab/nsp14A2-B338I338TaTTaCC11B.1.5610.000397
ORF1ab/nsp14A2-B338I338IatTatC11B.1.564.10.001577
ORF1ab/nsp14A2-B338I338delATT---11B.1.617.20.000004
ORF1ab/nsp14A2-B338I338TaTtaCt11B.1.6280.000352
ORF1ab/nsp14A2-B338I338VAttGtt11B.1.6370.000073
ORF1ab/nsp14A2-B338I338VAttGtt11C.370.000116
ORF1ab/nsp14A2-B338I338IatTatC11D.20.000075
ORF1ab/nsp14A2-B338I338IatTatA11P.1.120.000484
ORF1ab/nsp14A2-B338I338delATT---11P.1.150.000232
ORF1ab/nsp14A2-B338I338TaTtaCt11P.1.170.000162
ORF1ab/nsp14A2-B338I338LAttCtt11Q.80.000165