CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp14A2-B | 331 | D331D | D6256D | syn | gaC | gaT | 6413 | 6413 | 1 | 19030-19032 |
ORF1ab/nsp14A2-B | 331 | D331del | D6256del | del | GAC | --- | 25 | 25 | 1 | 19030-19032 |
ORF1ab/nsp14A2-B | 331 | D331Y | D6256Y | nonsyn | Gac | Tac | 18 | 18 | 1 | 19030-19032 |
ORF1ab/nsp14A2-B | 331 | D331E | D6256E | nonsyn | gaC | gaA | 9 | 7 | 0.777778 | 19030-19032 |
ORF1ab/nsp14A2-B | 331 | D331E | D6256E | nonsyn | gaC | gaG | 9 | 2 | 0.222222 | 19030-19032 |
ORF1ab/nsp14A2-B | 331 | D331H | D6256H | nonsyn | Gac | Cac | 7 | 7 | 1 | 19030-19032 |
ORF1ab/nsp14A2-B | 331 | D331G | D6256G | nonsyn | gAc | gGc | 6 | 5 | 0.833333 | 19030-19032 |
ORF1ab/nsp14A2-B | 331 | D331G | D6256G | nonsyn | gAC | gGT | 6 | 1 | 0.166667 | 19030-19032 |
ORF1ab/nsp14A2-B | 331 | D331V | D6256V | nonsyn | gAc | gTc | 2 | 2 | 1 | 19030-19032 |
ORF1ab/nsp14A2-B | 331 | D331L | D6256L | nonsyn | GAc | CTc | 2 | 2 | 1 | 19030-19032 |
ORF1ab/nsp14A2-B | 331 | D331del1 | D6256del1 | del | gaC | ga- | 1 | 1 | 1 | 19030-19032 |
ORF1ab/nsp14A2-B | 331 | D331A | D6256A | nonsyn | gAC | gCA | 1 | 1 | 1 | 19030-19032 |
ORF1ab/nsp14A2-B | 331 | D331N | D6256N | nonsyn | Gac | Aac | 1 | 1 | 1 | 19030-19032 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 6413 | 6413 | All | 0.001227 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 1173 | 1173 | B.1.258 | 0.078059 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 1052 | 1052 | B.1.623 | 0.564378 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 869 | 869 | AY.4 | 0.001353 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 777 | 777 | B.1.1.7 | 0.000696 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 201 | 201 | P.1.14 | 0.009608 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 194 | 194 | B.1.2 | 0.001708 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 162 | 162 | B.1.617.2 | 0.00061 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 117 | 117 | AY.103 | 0.000726 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 105 | 105 | AY.43 | 0.000465 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 99 | 99 | B.1 | 0.000907 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 91 | 91 | B.1.177 | 0.001198 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 90 | 90 | P.1 | 0.001418 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 86 | 86 | AY.16 | 0.03265 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 68 | 68 | AY.25 | 0.000409 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 59 | 59 | B.1.1 | 0.00107 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 57 | 57 | B.1.567 | 0.19 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 53 | 53 | B.1.427 | 0.002676 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 47 | 47 | B.1.36.34 | 1 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 45 | 45 | AY.44 | 0.000274 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 45 | 45 | B.1.160 | 0.001403 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 40 | 40 | B.1.36.8 | 0.04 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 35 | 35 | AY.118 | 0.002193 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 33 | 33 | B.1.1.519 | 0.00131 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 32 | 32 | AY.20 | 0.001244 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 32 | 32 | B.1.324 | 0.051364 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 30 | 30 | B.1.243 | 0.002088 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 29 | 29 | AY.3 | 0.000288 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 28 | 28 | AY.102 | 0.000742 |
ORF1ab/nsp14A2-B | 331 | D331del | GAC | --- | 25 | 25 | All | 0.000005 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 23 | 23 | B.1.1.214 | 0.001276 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 23 | 23 | B.1.1.318 | 0.00694 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 23 | 23 | B.1.221 | 0.001634 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 23 | 23 | B.1.628 | 0.008104 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 22 | 22 | P.1.10 | 0.005928 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 21 | 21 | B.1.1.170 | 0.026185 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 20 | 20 | B.1.351 | 0.000595 |
ORF1ab/nsp14A2-B | 331 | D331Y | Gac | Tac | 18 | 18 | All | 0.000003 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 17 | 17 | B.1.177.19 | 0.02432 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 17 | 17 | B.1.438.1 | 0.001823 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 16 | 16 | AY.47 | 0.000498 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 16 | 16 | B.1.429 | 0.000376 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 15 | 15 | B.1.621 | 0.001328 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 15 | 15 | C.37 | 0.001741 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 14 | 14 | AY.5 | 0.000289 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 12 | 12 | AY.23 | 0.000837 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 12 | 12 | AY.26 | 0.00034 |
ORF1ab/nsp14A2-B | 331 | D331del | GAC | --- | 12 | 12 | B.1.1.7 | 0.000011 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 11 | 11 | AY.54 | 0.001049 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 11 | 11 | AY.61 | 0.001153 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 10 | 10 | AY.39 | 0.000247 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 10 | 10 | B.1.177.79 | 0.023419 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 10 | 10 | B.1.497 | 0.003148 |
ORF1ab/nsp14A2-B | 331 | D331E | gaC | gaA | 7 | 9 | All | 0.000001 |
ORF1ab/nsp14A2-B | 331 | D331E | gaC | gaG | 2 | 9 | All | 0 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 9 | 9 | AS.2 | 0.140625 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 9 | 9 | AY.119 | 0.000318 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 9 | 9 | AY.29 | 0.000142 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 9 | 9 | AY.42 | 0.000362 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 9 | 9 | AY.73 | 0.005988 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 9 | 9 | AY.99.2 | 0.000829 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 9 | 9 | B.1.258.24 | 0.096774 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 9 | 9 | B.1.367 | 0.007132 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 9 | 9 | B.1.526 | 0.000212 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 9 | 9 | B.1.595 | 0.002349 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 9 | 9 | B.1.620 | 0.008515 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 8 | 8 | AY.86 | 0.006639 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 8 | 8 | B.1.525 | 0.000905 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 8 | 8 | B.1.596 | 0.000697 |
ORF1ab/nsp14A2-B | 331 | D331H | Gac | Cac | 7 | 7 | All | 0.000001 |
ORF1ab/nsp14A2-B | 331 | D331Y | Gac | Tac | 7 | 7 | B.1 | 0.000064 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 7 | 7 | B.1.1.222 | 0.001428 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 7 | 7 | B.1.470 | 0.009831 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 7 | 7 | B.1.568 | 0.007778 |
ORF1ab/nsp14A2-B | 331 | D331G | gAc | gGc | 5 | 6 | All | 0.000001 |
ORF1ab/nsp14A2-B | 331 | D331G | gAC | gGT | 1 | 6 | All | 0 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 6 | 6 | AY.100 | 0.000276 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 6 | 6 | AY.120 | 0.000223 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 6 | 6 | B.1.1.311 | 0.002149 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 6 | 6 | B.1.177.81 | 0.001136 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 6 | 6 | B.1.241 | 0.00487 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 5 | 5 | AY.14 | 0.00044 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 5 | 5 | AY.46 | 0.00052 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 5 | 5 | P.2 | 0.000933 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 4 | 4 | AY.33 | 0.000267 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 4 | 4 | AY.5.3 | 0.00135 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 4 | 4 | AY.98.1 | 0.000194 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 4 | 4 | B.1.1.220 | 0.007435 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 4 | 4 | B.1.1.25 | 0.002274 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 4 | 4 | B.1.1.28 | 0.001245 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 4 | 4 | B.1.1.294 | 0.005063 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 4 | 4 | B.1.234 | 0.000528 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 4 | 4 | B.1.617.1 | 0.000516 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 4 | 4 | B.1.637 | 0.000292 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 3 | 3 | AE.8 | 0.001467 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 3 | 3 | AU.1 | 0.003797 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 3 | 3 | AY.3.1 | 0.000256 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 3 | 3 | AY.30 | 0.001187 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 3 | 3 | AY.46.4 | 0.000494 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 3 | 3 | AY.6 | 0.000123 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 3 | 3 | AY.9 | 0.000203 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 3 | 3 | AY.9.2 | 0.00011 |
ORF1ab/nsp14A2-B | 331 | D331E | gaC | gaA | 2 | 3 | B.1 | 0.000018 |
ORF1ab/nsp14A2-B | 331 | D331E | gaC | gaG | 1 | 3 | B.1 | 0.000009 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 3 | 3 | B.1.1.171 | 0.011029 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 3 | 3 | B.1.311 | 0.000824 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 3 | 3 | B.1.36.29 | 0.001552 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 3 | 3 | B.1.462 | 0.021739 |
ORF1ab/nsp14A2-B | 331 | D331del | GAC | --- | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 3 | 3 | P.1.15 | 0.000697 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 3 | 3 | Q.4 | 0.001364 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 2 | 2 | AD.2 | 0.000438 |
ORF1ab/nsp14A2-B | 331 | D331V | gAc | gTc | 2 | 2 | All | 0 |
ORF1ab/nsp14A2-B | 331 | D331L | GAc | CTc | 2 | 2 | All | 0 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 2 | 2 | AY.106 | 0.00067 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 2 | 2 | AY.117 | 0.000169 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 2 | 2 | AY.2 | 0.000712 |
ORF1ab/nsp14A2-B | 331 | D331Y | Gac | Tac | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 2 | 2 | AY.34 | 0.000194 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 2 | 2 | AY.36 | 0.000296 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 2 | 2 | AY.37 | 0.000632 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 2 | 2 | AY.39.1 | 0.000079 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 2 | 2 | AY.4.2 | 0.000043 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 2 | 2 | AY.5.4 | 0.000553 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 2 | 2 | AY.68 | 0.000547 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 2 | 2 | B | 0.000256 |
ORF1ab/nsp14A2-B | 331 | D331G | gAc | gGc | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 2 | 2 | B.1.1.141 | 0.004024 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 2 | 2 | B.1.1.416 | 0.00181 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 2 | 2 | B.1.1.486 | 0.003155 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 2 | 2 | B.1.1.50 | 0.001358 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 2 | 2 | B.1.1.63 | 0.000772 |
ORF1ab/nsp14A2-B | 331 | D331H | Gac | Cac | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp14A2-B | 331 | D331G | gAc | gGc | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 2 | 2 | B.1.177.4 | 0.000422 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 2 | 2 | B.1.177.45 | 0.000762 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 2 | 2 | B.1.177.73 | 0.001133 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 2 | 2 | B.1.177.86 | 0.000367 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 2 | 2 | B.1.177.9 | 0.002663 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 2 | 2 | B.1.258.11 | 0.000793 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 2 | 2 | B.1.349 | 0.00143 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 2 | 2 | B.1.351.3 | 0.001753 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 2 | 2 | B.1.36.17 | 0.000988 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 2 | 2 | B.1.369 | 0.00057 |
ORF1ab/nsp14A2-B | 331 | D331L | GAc | CTc | 2 | 2 | B.1.416 | 0.002538 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 2 | 2 | B.1.561 | 0.000794 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 2 | 2 | B.1.562 | 0.037037 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 2 | 2 | B.1.574 | 0.004301 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 2 | 2 | B.1.605 | 0.011905 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 2 | 2 | B.1.609 | 0.000959 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 2 | 2 | C.8 | 0.008929 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 2 | 2 | Q.3 | 0.00029 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 2 | 2 | Q.8 | 0.00033 |
ORF1ab/nsp14A2-B | 331 | D331V | gAc | gTc | 1 | 1 | A | 0.000387 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 1 | 1 | A.21 | 0.00277 |
ORF1ab/nsp14A2-B | 331 | D331A | gAC | gCA | 1 | 1 | All | 0 |
ORF1ab/nsp14A2-B | 331 | D331N | Gac | Aac | 1 | 1 | All | 0 |
ORF1ab/nsp14A2-B | 331 | D331del1 | gaC | ga- | 1 | 1 | All | 0 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp14A2-B | 331 | D331H | Gac | Cac | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 1 | 1 | AY.120.2 | 0.001285 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp14A2-B | 331 | D331E | gaC | gaG | 1 | 1 | AY.2 | 0.000356 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 1 | 1 | AY.21 | 0.001898 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp14A2-B | 331 | D331del | GAC | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp14A2-B | 331 | D331G | gAC | gGT | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp14A2-B | 331 | D331G | gAc | gGc | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 1 | 1 | AY.41 | 0.000294 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp14A2-B | 331 | D331Y | Gac | Tac | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp14A2-B | 331 | D331Y | Gac | Tac | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp14A2-B | 331 | D331Y | Gac | Tac | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 1 | 1 | AY.90 | 0.000684 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 1 | 1 | AY.96 | 0.002075 |
ORF1ab/nsp14A2-B | 331 | D331Y | Gac | Tac | 1 | 1 | B | 0.000128 |
ORF1ab/nsp14A2-B | 331 | D331E | gaC | gaA | 1 | 1 | B | 0.000128 |
ORF1ab/nsp14A2-B | 331 | D331H | Gac | Cac | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp14A2-B | 331 | D331H | Gac | Cac | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp14A2-B | 331 | D331del1 | gaC | ga- | 1 | 1 | B.1.1.137 | 0.0125 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 1 | 1 | B.1.1.240 | 0.004695 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 1 | 1 | B.1.1.241 | 0.00207 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 1 | 1 | B.1.1.304 | 0.002809 |
ORF1ab/nsp14A2-B | 331 | D331del | GAC | --- | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp14A2-B | 331 | D331del | GAC | --- | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 1 | 1 | B.1.1.354 | 0.004386 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 1 | 1 | B.1.1.370 | 0.012658 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 1 | 1 | B.1.1.371 | 0.010417 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 1 | 1 | B.1.1.403 | 0.025641 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 1 | 1 | B.1.1.432 | 0.001266 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp14A2-B | 331 | D331N | Gac | Aac | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp14A2-B | 331 | D331Y | Gac | Tac | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp14A2-B | 331 | D331E | gaC | gaA | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 1 | 1 | B.1.126 | 0.001276 |
ORF1ab/nsp14A2-B | 331 | D331del | GAC | --- | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 1 | 1 | B.1.177.33 | 0.001645 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp14A2-B | 331 | D331del | GAC | --- | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp14A2-B | 331 | D331H | Gac | Cac | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 1 | 1 | B.1.233 | 0.014085 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 1 | 1 | B.1.239 | 0.001221 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 1 | 1 | B.1.265 | 0.001271 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 1 | 1 | B.1.279 | 0.000514 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 1 | 1 | B.1.332 | 0.003497 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 1 | 1 | B.1.338 | 0.008621 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp14A2-B | 331 | D331A | gAC | gCA | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 1 | 1 | B.1.382 | 0.008929 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 1 | 1 | B.1.398 | 0.002976 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 1 | 1 | B.1.413 | 0.004255 |
ORF1ab/nsp14A2-B | 331 | D331del | GAC | --- | 1 | 1 | B.1.415 | 0.014286 |
ORF1ab/nsp14A2-B | 331 | D331H | Gac | Cac | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp14A2-B | 331 | D331V | gAc | gTc | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 1 | 1 | B.1.422 | 0.000812 |
ORF1ab/nsp14A2-B | 331 | D331Y | Gac | Tac | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 1 | 1 | B.1.466.1 | 0.007194 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 1 | 1 | B.1.468 | 0.005714 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 1 | 1 | B.1.487 | 0.019608 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 1 | 1 | B.1.537 | 0.02 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 1 | 1 | B.1.543 | 0.01 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 1 | 1 | B.1.560 | 0.00463 |
ORF1ab/nsp14A2-B | 331 | D331del | GAC | --- | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 1 | 1 | B.1.6 | 0.017241 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 1 | 1 | B.1.600 | 0.005848 |
ORF1ab/nsp14A2-B | 331 | D331Y | Gac | Tac | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 1 | 1 | B.1.618 | 0.004032 |
ORF1ab/nsp14A2-B | 331 | D331Y | Gac | Tac | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 1 | 1 | B.23 | 0.002924 |
ORF1ab/nsp14A2-B | 331 | D331E | gaC | gaA | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp14A2-B | 331 | D331del | GAC | --- | 1 | 1 | C.17 | 0.055556 |
ORF1ab/nsp14A2-B | 331 | D331Y | Gac | Tac | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp14A2-B | 331 | D331E | gaC | gaA | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp14A2-B | 331 | D331del | GAC | --- | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 1 | 1 | P.1.8 | 0.004785 |
ORF1ab/nsp14A2-B | 331 | D331E | gaC | gaA | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp14A2-B | 331 | D331D | gaC | gaT | 1 | 1 | P.6 | 0.003145 |
ORF1ab/nsp14A2-B | 331 | D331del | GAC | --- | 1 | 1 | Q.8 | 0.000165 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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