CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp14A2-B | 330 | H330H | H6255H | syn | caC | caT | 3255 | 3255 | 1 | 19027-19029 |
ORF1ab/nsp14A2-B | 330 | H330Y | H6255Y | nonsyn | Cac | Tac | 382 | 382 | 1 | 19027-19029 |
ORF1ab/nsp14A2-B | 330 | H330R | H6255R | nonsyn | cAc | cGc | 33 | 32 | 0.969697 | 19027-19029 |
ORF1ab/nsp14A2-B | 330 | H330R | H6255R | nonsyn | cAC | cGT | 33 | 1 | 0.030303 | 19027-19029 |
ORF1ab/nsp14A2-B | 330 | H330del | H6255del | del | CAC | --- | 26 | 26 | 1 | 19027-19029 |
ORF1ab/nsp14A2-B | 330 | H330P | H6255P | nonsyn | cAC | cCA | 17 | 16 | 0.941176 | 19027-19029 |
ORF1ab/nsp14A2-B | 330 | H330P | H6255P | nonsyn | cAc | cCc | 17 | 1 | 0.0588235 | 19027-19029 |
ORF1ab/nsp14A2-B | 330 | H330N | H6255N | nonsyn | Cac | Aac | 15 | 15 | 1 | 19027-19029 |
ORF1ab/nsp14A2-B | 330 | H330Q | H6255Q | nonsyn | caC | caA | 6 | 5 | 0.833333 | 19027-19029 |
ORF1ab/nsp14A2-B | 330 | H330Q | H6255Q | nonsyn | caC | caG | 6 | 1 | 0.166667 | 19027-19029 |
ORF1ab/nsp14A2-B | 330 | H330L | H6255L | nonsyn | cAc | cTc | 3 | 2 | 0.666667 | 19027-19029 |
ORF1ab/nsp14A2-B | 330 | H330L | H6255L | nonsyn | CAC | TTG | 3 | 1 | 0.333333 | 19027-19029 |
ORF1ab/nsp14A2-B | 330 | H330del1 | H6255del1 | del | Cac | -ac | 1 | 1 | 1 | 19027-19029 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 3255 | 3255 | All | 0.000623 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 634 | 634 | B.1.241 | 0.51461 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 556 | 556 | B.1.1.7 | 0.000498 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 522 | 522 | AY.4 | 0.000812 |
ORF1ab/nsp14A2-B | 330 | H330Y | Cac | Tac | 382 | 382 | All | 0.000073 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 200 | 200 | AY.120 | 0.007436 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 159 | 159 | AY.4.2 | 0.003449 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 138 | 138 | AY.103 | 0.000857 |
ORF1ab/nsp14A2-B | 330 | H330Y | Cac | Tac | 92 | 92 | B.1.1.7 | 0.000082 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 71 | 71 | AY.43 | 0.000315 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 53 | 53 | B.1.2 | 0.000467 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 50 | 50 | B.1.1.1 | 0.016335 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 50 | 50 | B.1.617.2 | 0.000188 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 47 | 47 | B.1.609 | 0.022531 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 45 | 45 | AY.44 | 0.000274 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 40 | 40 | B.1.1.39 | 0.020387 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 39 | 39 | AY.118 | 0.002443 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 37 | 37 | B.1 | 0.000339 |
ORF1ab/nsp14A2-B | 330 | H330Y | Cac | Tac | 34 | 34 | B.1.617.2 | 0.000128 |
ORF1ab/nsp14A2-B | 330 | H330R | cAc | cGc | 32 | 33 | All | 0.000006 |
ORF1ab/nsp14A2-B | 330 | H330R | cAC | cGT | 1 | 33 | All | 0 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 33 | 33 | AY.119 | 0.001165 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 33 | 33 | P.1 | 0.00052 |
ORF1ab/nsp14A2-B | 330 | H330Y | Cac | Tac | 32 | 32 | AY.4 | 0.00005 |
ORF1ab/nsp14A2-B | 330 | H330Y | Cac | Tac | 31 | 31 | B.1.221 | 0.002202 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 27 | 27 | B.1.1.307 | 0.068354 |
ORF1ab/nsp14A2-B | 330 | H330del | CAC | --- | 26 | 26 | All | 0.000005 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 25 | 25 | AY.3 | 0.000249 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 24 | 24 | B.1.429 | 0.000565 |
ORF1ab/nsp14A2-B | 330 | H330Y | Cac | Tac | 23 | 23 | AY.43 | 0.000102 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 21 | 21 | B.1.36.17 | 0.010375 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 20 | 20 | B.1.351 | 0.000595 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 18 | 18 | AY.9.2 | 0.000661 |
ORF1ab/nsp14A2-B | 330 | H330P | cAC | cCA | 16 | 17 | All | 0.000003 |
ORF1ab/nsp14A2-B | 330 | H330P | cAc | cCc | 1 | 17 | All | 0 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 17 | 17 | AY.102 | 0.000451 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 17 | 17 | B.1.1 | 0.000308 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 17 | 17 | B.1.177 | 0.000224 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 16 | 16 | AY.25 | 0.000096 |
ORF1ab/nsp14A2-B | 330 | H330Y | Cac | Tac | 16 | 16 | AY.29 | 0.000252 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 16 | 16 | B.1.243 | 0.001113 |
ORF1ab/nsp14A2-B | 330 | H330N | Cac | Aac | 15 | 15 | All | 0.000003 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 14 | 14 | AY.39 | 0.000346 |
ORF1ab/nsp14A2-B | 330 | H330Y | Cac | Tac | 14 | 14 | AY.61 | 0.001467 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 13 | 13 | B.1.371 | 0.01459 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 13 | 13 | P.1.14 | 0.000621 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 12 | 12 | AY.46 | 0.001249 |
ORF1ab/nsp14A2-B | 330 | H330del | CAC | --- | 12 | 12 | B.1.1.7 | 0.000011 |
ORF1ab/nsp14A2-B | 330 | H330Y | Cac | Tac | 12 | 12 | P.1 | 0.000189 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 10 | 10 | AY.91 | 0.007305 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 9 | 9 | AY.47 | 0.00028 |
ORF1ab/nsp14A2-B | 330 | H330Y | Cac | Tac | 9 | 9 | B.1.1.70 | 0.00307 |
ORF1ab/nsp14A2-B | 330 | H330Y | Cac | Tac | 9 | 9 | B.1.160 | 0.000281 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 9 | 9 | B.1.221 | 0.000639 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 9 | 9 | B.1.621 | 0.000797 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 9 | 9 | B.30 | 0.132353 |
ORF1ab/nsp14A2-B | 330 | H330Y | Cac | Tac | 8 | 8 | AY.25 | 0.000048 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 8 | 8 | AY.34 | 0.000776 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 8 | 8 | B.1.1.282 | 0.093023 |
ORF1ab/nsp14A2-B | 330 | H330R | cAc | cGc | 7 | 8 | B.1.1.7 | 0.000006 |
ORF1ab/nsp14A2-B | 330 | H330R | cAC | cGT | 1 | 8 | B.1.1.7 | 0.000001 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 7 | 7 | AY.29 | 0.00011 |
ORF1ab/nsp14A2-B | 330 | H330Q | caC | caA | 5 | 6 | All | 0.000001 |
ORF1ab/nsp14A2-B | 330 | H330Q | caC | caG | 1 | 6 | All | 0 |
ORF1ab/nsp14A2-B | 330 | H330Y | Cac | Tac | 6 | 6 | AY.103 | 0.000037 |
ORF1ab/nsp14A2-B | 330 | H330Y | Cac | Tac | 6 | 6 | B.1 | 0.000055 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 6 | 6 | B.1.525 | 0.000679 |
ORF1ab/nsp14A2-B | 330 | H330P | cAC | cCA | 6 | 6 | P.1.14 | 0.000287 |
ORF1ab/nsp14A2-B | 330 | H330P | cAC | cCA | 6 | 6 | P.2 | 0.00112 |
ORF1ab/nsp14A2-B | 330 | H330Y | Cac | Tac | 5 | 5 | AY.117 | 0.000423 |
ORF1ab/nsp14A2-B | 330 | H330Y | Cac | Tac | 5 | 5 | AY.119 | 0.000177 |
ORF1ab/nsp14A2-B | 330 | H330Y | Cac | Tac | 5 | 5 | AY.3 | 0.00005 |
ORF1ab/nsp14A2-B | 330 | H330Y | Cac | Tac | 5 | 5 | AY.42 | 0.000201 |
ORF1ab/nsp14A2-B | 330 | H330N | Cac | Aac | 5 | 5 | B.1.1.7 | 0.000004 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 5 | 5 | B.1.160 | 0.000156 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 5 | 5 | B.1.36 | 0.00073 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 5 | 5 | B.1.427 | 0.000252 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 4 | 4 | AY.100 | 0.000184 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 4 | 4 | AY.33 | 0.000267 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 4 | 4 | B | 0.000511 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 4 | 4 | B.1.258 | 0.000266 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 4 | 4 | B.1.369 | 0.001141 |
ORF1ab/nsp14A2-B | 330 | H330Y | Cac | Tac | 4 | 4 | C.36.3 | 0.002269 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 4 | 4 | Q.8 | 0.00066 |
ORF1ab/nsp14A2-B | 330 | H330L | cAc | cTc | 2 | 3 | All | 0 |
ORF1ab/nsp14A2-B | 330 | H330L | CAC | TTG | 1 | 3 | All | 0 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 3 | 3 | AY.109 | 0.002219 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 3 | 3 | AY.110 | 0.000338 |
ORF1ab/nsp14A2-B | 330 | H330Y | Cac | Tac | 3 | 3 | AY.12 | 0.000948 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 3 | 3 | AY.20 | 0.000117 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 3 | 3 | AY.36 | 0.000445 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 3 | 3 | AY.5.4 | 0.00083 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 3 | 3 | AY.6 | 0.000123 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 3 | 3 | AY.61 | 0.000314 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 3 | 3 | AY.73 | 0.001996 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 3 | 3 | AY.75 | 0.000168 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 3 | 3 | AY.9.1 | 0.000251 |
ORF1ab/nsp14A2-B | 330 | H330R | cAc | cGc | 3 | 3 | AY.9.2 | 0.00011 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 3 | 3 | AY.98.1 | 0.000145 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 3 | 3 | AY.99.2 | 0.000276 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 3 | 3 | B.1.1.25 | 0.001706 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 3 | 3 | B.1.1.519 | 0.000119 |
ORF1ab/nsp14A2-B | 330 | H330Y | Cac | Tac | 3 | 3 | B.1.177.19 | 0.004292 |
ORF1ab/nsp14A2-B | 330 | H330Y | Cac | Tac | 3 | 3 | B.1.2 | 0.000026 |
ORF1ab/nsp14A2-B | 330 | H330Y | Cac | Tac | 3 | 3 | B.1.526 | 0.000071 |
ORF1ab/nsp14A2-B | 330 | H330del | CAC | --- | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp14A2-B | 330 | H330N | Cac | Aac | 3 | 3 | B.1.623 | 0.001609 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 3 | 3 | D.2 | 0.000225 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 2 | 2 | A.2.5 | 0.000998 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 2 | 2 | AY.106 | 0.00067 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 2 | 2 | AY.107 | 0.000932 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 2 | 2 | AY.113 | 0.000285 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 2 | 2 | AY.116 | 0.000574 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 2 | 2 | AY.116.1 | 0.000623 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 2 | 2 | AY.121 | 0.000271 |
ORF1ab/nsp14A2-B | 330 | H330del | CAC | --- | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 2 | 2 | AY.26 | 0.000057 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 2 | 2 | AY.27 | 0.000129 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp14A2-B | 330 | H330Y | Cac | Tac | 2 | 2 | AY.71 | 0.00095 |
ORF1ab/nsp14A2-B | 330 | H330Y | Cac | Tac | 2 | 2 | AY.99.2 | 0.000184 |
ORF1ab/nsp14A2-B | 330 | H330R | cAc | cGc | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp14A2-B | 330 | H330Q | caC | caA | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp14A2-B | 330 | H330R | cAc | cGc | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp14A2-B | 330 | H330Y | Cac | Tac | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 2 | 2 | B.1.1.214 | 0.000111 |
ORF1ab/nsp14A2-B | 330 | H330R | cAc | cGc | 2 | 2 | B.1.1.398 | 0.006452 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 2 | 2 | B.1.1.432 | 0.002532 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 2 | 2 | B.1.1.52 | 0.02439 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 2 | 2 | B.1.111 | 0.00235 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 2 | 2 | B.1.126 | 0.002551 |
ORF1ab/nsp14A2-B | 330 | H330Y | Cac | Tac | 2 | 2 | B.1.234 | 0.000264 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 2 | 2 | B.1.234 | 0.000264 |
ORF1ab/nsp14A2-B | 330 | H330Y | Cac | Tac | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 2 | 2 | B.1.351.2 | 0.000605 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 2 | 2 | B.1.36.18 | 0.00084 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 2 | 2 | B.1.509 | 0.001732 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 2 | 2 | B.1.511 | 0.068966 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 2 | 2 | B.1.526 | 0.000047 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 2 | 2 | B.1.530 | 0.014286 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 2 | 2 | B.1.558 | 0.009132 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 2 | 2 | B.1.575.1 | 0.004878 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 2 | 2 | B.1.595 | 0.000522 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 2 | 2 | B.1.596 | 0.000174 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 2 | 2 | B.1.621.1 | 0.001012 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 2 | 2 | C.14 | 0.008658 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 2 | 2 | C.16 | 0.002121 |
ORF1ab/nsp14A2-B | 330 | H330P | cAC | cCA | 2 | 2 | N.9 | 0.011905 |
ORF1ab/nsp14A2-B | 330 | H330P | cAC | cCA | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 2 | 2 | Q.3 | 0.00029 |
ORF1ab/nsp14A2-B | 330 | H330Y | Cac | Tac | 2 | 2 | Q.8 | 0.00033 |
ORF1ab/nsp14A2-B | 330 | H330N | Cac | Aac | 1 | 1 | A | 0.000387 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 1 | 1 | A | 0.000387 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 1 | 1 | A.3 | 0.002096 |
ORF1ab/nsp14A2-B | 330 | H330Y | Cac | Tac | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 1 | 1 | AE.8 | 0.000489 |
ORF1ab/nsp14A2-B | 330 | H330del1 | Cac | -ac | 1 | 1 | All | 0 |
ORF1ab/nsp14A2-B | 330 | H330Y | Cac | Tac | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp14A2-B | 330 | H330Y | Cac | Tac | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp14A2-B | 330 | H330Y | Cac | Tac | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp14A2-B | 330 | H330R | cAc | cGc | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp14A2-B | 330 | H330Y | Cac | Tac | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp14A2-B | 330 | H330R | cAc | cGc | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp14A2-B | 330 | H330Y | Cac | Tac | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp14A2-B | 330 | H330R | cAc | cGc | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp14A2-B | 330 | H330Y | Cac | Tac | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp14A2-B | 330 | H330Y | Cac | Tac | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp14A2-B | 330 | H330Y | Cac | Tac | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp14A2-B | 330 | H330Y | Cac | Tac | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp14A2-B | 330 | H330Y | Cac | Tac | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp14A2-B | 330 | H330Q | caC | caG | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp14A2-B | 330 | H330R | cAc | cGc | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp14A2-B | 330 | H330Y | Cac | Tac | 1 | 1 | AY.40 | 0.000964 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp14A2-B | 330 | H330Y | Cac | Tac | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp14A2-B | 330 | H330Y | Cac | Tac | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp14A2-B | 330 | H330Y | Cac | Tac | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp14A2-B | 330 | H330Y | Cac | Tac | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp14A2-B | 330 | H330Y | Cac | Tac | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp14A2-B | 330 | H330Y | Cac | Tac | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp14A2-B | 330 | H330Y | Cac | Tac | 1 | 1 | AY.73 | 0.000665 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 1 | 1 | AY.77 | 0.001127 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 1 | 1 | AY.90 | 0.000684 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 1 | 1 | AY.94 | 0.000443 |
ORF1ab/nsp14A2-B | 330 | H330Y | Cac | Tac | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 1 | 1 | AZ.2 | 0.000821 |
ORF1ab/nsp14A2-B | 330 | H330L | cAc | cTc | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp14A2-B | 330 | H330N | Cac | Aac | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp14A2-B | 330 | H330P | cAc | cCc | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 1 | 1 | B.1.1.153 | 0.001095 |
ORF1ab/nsp14A2-B | 330 | H330Y | Cac | Tac | 1 | 1 | B.1.1.157 | 0.000913 |
ORF1ab/nsp14A2-B | 330 | H330Y | Cac | Tac | 1 | 1 | B.1.1.176 | 0.000439 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 1 | 1 | B.1.1.176 | 0.000439 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 1 | 1 | B.1.1.255 | 0.00303 |
ORF1ab/nsp14A2-B | 330 | H330Y | Cac | Tac | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp14A2-B | 330 | H330Y | Cac | Tac | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 1 | 1 | B.1.1.303 | 0.002762 |
ORF1ab/nsp14A2-B | 330 | H330del | CAC | --- | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp14A2-B | 330 | H330del | CAC | --- | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp14A2-B | 330 | H330N | Cac | Aac | 1 | 1 | B.1.1.354 | 0.004386 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 1 | 1 | B.1.1.376 | 0.005952 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 1 | 1 | B.1.1.44 | 0.00241 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 1 | 1 | B.1.1.482 | 0.023256 |
ORF1ab/nsp14A2-B | 330 | H330Y | Cac | Tac | 1 | 1 | B.1.1.50 | 0.000679 |
ORF1ab/nsp14A2-B | 330 | H330Y | Cac | Tac | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 1 | 1 | B.1.1.57 | 0.011494 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp14A2-B | 330 | H330Y | Cac | Tac | 1 | 1 | B.1.126 | 0.001276 |
ORF1ab/nsp14A2-B | 330 | H330R | cAc | cGc | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp14A2-B | 330 | H330L | cAc | cTc | 1 | 1 | B.1.160.22 | 0.006757 |
ORF1ab/nsp14A2-B | 330 | H330R | cAc | cGc | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp14A2-B | 330 | H330del | CAC | --- | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp14A2-B | 330 | H330N | Cac | Aac | 1 | 1 | B.1.177.43 | 0.001477 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 1 | 1 | B.1.177.62 | 0.001192 |
ORF1ab/nsp14A2-B | 330 | H330del | CAC | --- | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp14A2-B | 330 | H330Y | Cac | Tac | 1 | 1 | B.1.177.9 | 0.001332 |
ORF1ab/nsp14A2-B | 330 | H330R | cAc | cGc | 1 | 1 | B.1.189 | 0.004292 |
ORF1ab/nsp14A2-B | 330 | H330N | Cac | Aac | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp14A2-B | 330 | H330del1 | Cac | -ac | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp14A2-B | 330 | H330Q | caC | caA | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp14A2-B | 330 | H330Y | Cac | Tac | 1 | 1 | B.1.223 | 0.002778 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 1 | 1 | B.1.232 | 0.000537 |
ORF1ab/nsp14A2-B | 330 | H330Y | Cac | Tac | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp14A2-B | 330 | H330Y | Cac | Tac | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp14A2-B | 330 | H330R | cAc | cGc | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 1 | 1 | B.1.258.7 | 0.001912 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 1 | 1 | B.1.301 | 0.005917 |
ORF1ab/nsp14A2-B | 330 | H330R | cAc | cGc | 1 | 1 | B.1.346 | 0.001311 |
ORF1ab/nsp14A2-B | 330 | H330Y | Cac | Tac | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 1 | 1 | B.1.36.16 | 0.001425 |
ORF1ab/nsp14A2-B | 330 | H330Y | Cac | Tac | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 1 | 1 | B.1.36.19 | 0.009259 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp14A2-B | 330 | H330L | CAC | TTG | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 1 | 1 | B.1.36.8 | 0.001 |
ORF1ab/nsp14A2-B | 330 | H330Q | caC | caA | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp14A2-B | 330 | H330del | CAC | --- | 1 | 1 | B.1.415 | 0.014286 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 1 | 1 | B.1.422 | 0.000812 |
ORF1ab/nsp14A2-B | 330 | H330Y | Cac | Tac | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp14A2-B | 330 | H330R | cAc | cGc | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 1 | 1 | B.1.459 | 0.004082 |
ORF1ab/nsp14A2-B | 330 | H330R | cAc | cGc | 1 | 1 | B.1.462 | 0.007246 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 1 | 1 | B.1.469 | 0.00361 |
ORF1ab/nsp14A2-B | 330 | H330R | cAc | cGc | 1 | 1 | B.1.499 | 0.00105 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 1 | 1 | B.1.524 | 0.001406 |
ORF1ab/nsp14A2-B | 330 | H330Q | caC | caA | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp14A2-B | 330 | H330N | Cac | Aac | 1 | 1 | B.1.560 | 0.00463 |
ORF1ab/nsp14A2-B | 330 | H330del | CAC | --- | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp14A2-B | 330 | H330R | cAc | cGc | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp14A2-B | 330 | H330Y | Cac | Tac | 1 | 1 | B.1.588 | 0.00091 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 1 | 1 | B.1.590 | 0.004545 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 1 | 1 | B.1.597 | 0.00463 |
ORF1ab/nsp14A2-B | 330 | H330Y | Cac | Tac | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp14A2-B | 330 | H330R | cAc | cGc | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp14A2-B | 330 | H330Y | Cac | Tac | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp14A2-B | 330 | H330Y | Cac | Tac | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp14A2-B | 330 | H330Y | Cac | Tac | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 1 | 1 | B.1.93 | 0.000934 |
ORF1ab/nsp14A2-B | 330 | H330Y | Cac | Tac | 1 | 1 | B.3 | 0.000831 |
ORF1ab/nsp14A2-B | 330 | H330R | cAc | cGc | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp14A2-B | 330 | H330Y | Cac | Tac | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp14A2-B | 330 | H330N | Cac | Aac | 1 | 1 | B.6.6 | 0.000889 |
ORF1ab/nsp14A2-B | 330 | H330R | cAc | cGc | 1 | 1 | B.6.6 | 0.000889 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 1 | 1 | B.60 | 0.015873 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 1 | 1 | C.1.2 | 0.004255 |
ORF1ab/nsp14A2-B | 330 | H330del | CAC | --- | 1 | 1 | C.17 | 0.055556 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 1 | 1 | C.36.3.1 | 0.002717 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp14A2-B | 330 | H330del | CAC | --- | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 1 | 1 | P.3 | 0.001595 |
ORF1ab/nsp14A2-B | 330 | H330Y | Cac | Tac | 1 | 1 | Q.3 | 0.000145 |
ORF1ab/nsp14A2-B | 330 | H330del | CAC | --- | 1 | 1 | Q.8 | 0.000165 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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