CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp14A2-B : CodonNum = 326

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF1ab/nsp14A2-B	326	F326F	F6251F	syn	ttC	ttT	13524	13524	1	19015-19017
ORF1ab/nsp14A2-B	326	F326L	F6251L	nonsyn	Ttc	Ctc	266	227	0.853383	19015-19017
ORF1ab/nsp14A2-B	326	F326L	F6251L	nonsyn	ttC	ttA	266	36	0.135338	19015-19017
ORF1ab/nsp14A2-B	326	F326L	F6251L	nonsyn	ttC	ttG	266	3	0.0112782	19015-19017
ORF1ab/nsp14A2-B	326	F326S	F6251S	nonsyn	tTc	tCc	125	123	0.984	19015-19017
ORF1ab/nsp14A2-B	326	F326S	F6251S	nonsyn	tTC	tCT	125	1	0.008	19015-19017
ORF1ab/nsp14A2-B	326	F326S	F6251S	nonsyn	tTC	tCG	125	1	0.008	19015-19017
ORF1ab/nsp14A2-B	326	F326I	F6251I	nonsyn	Ttc	Atc	53	51	0.962264	19015-19017
ORF1ab/nsp14A2-B	326	F326I	F6251I	nonsyn	TtC	AtT	53	2	0.0377358	19015-19017
ORF1ab/nsp14A2-B	326	F326Y	F6251Y	nonsyn	tTc	tAc	33	33	1	19015-19017
ORF1ab/nsp14A2-B	326	F326del	F6251del	del	TTC	---	23	23	1	19015-19017
ORF1ab/nsp14A2-B	326	F326V	F6251V	nonsyn	Ttc	Gtc	8	7	0.875	19015-19017
ORF1ab/nsp14A2-B	326	F326V	F6251V	nonsyn	TtC	GtT	8	1	0.125	19015-19017
ORF1ab/nsp14A2-B	326	F326del1	F6251del1	del	Ttc	-tc	4	2	0.5	19015-19017
ORF1ab/nsp14A2-B	326	F326del1	F6251del1	del	ttC	tt-	4	1	0.25	19015-19017
ORF1ab/nsp14A2-B	326	F326del1	F6251del1	del	TtC	-tT	4	1	0.25	19015-19017
ORF1ab/nsp14A2-B	326	F326C	F6251C	nonsyn	tTc	tGc	3	3	1	19015-19017
ORF1ab/nsp14A2-B	326	F326del2	F6251del2	del	tTC	t--	1	1	1	19015-19017
ORF1ab/nsp14A2-B	326	F326T	F6251T	nonsyn	TTc	ACc	1	1	1	19015-19017

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	13524	13524	All	0.002587
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	1915	1915	AY.118	0.119972
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	1903	1903	B.1.1.176	0.836116
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	1676	1676	B.1.1.7	0.0015
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	1199	1199	B.1.1	0.021751
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	731	731	B.1.617.2	0.002753
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	682	682	B.1.177	0.00898
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	378	378	AY.100	0.017391
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	363	363	AY.4	0.000565
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	344	344	B.1.1.417	0.92973
ORF1ab/nsp14A2-B	326	F326L	Ttc	Ctc	227	266	All	0.000043
ORF1ab/nsp14A2-B	326	F326L	ttC	ttA	36	266	All	0.000007
ORF1ab/nsp14A2-B	326	F326L	ttC	ttG	3	266	All	0.000001
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	266	266	AY.43	0.001179
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	227	227	AY.109	0.167899
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	212	212	AY.34	0.020557
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	203	203	B.1.2	0.001787
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	198	198	AY.103	0.001229
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	179	179	B.1	0.00164
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	171	171	AY.3	0.001701
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	158	158	AY.25	0.00095
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	133	133	AY.44	0.00081
ORF1ab/nsp14A2-B	326	F326S	tTc	tCc	123	125	All	0.000024
ORF1ab/nsp14A2-B	326	F326S	tTC	tCG	1	125	All	0
ORF1ab/nsp14A2-B	326	F326S	tTC	tCT	1	125	All	0
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	122	122	P.1	0.001922
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	116	116	B.1.525	0.013127
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	95	95	B.1.526	0.002233
ORF1ab/nsp14A2-B	326	F326L	Ttc	Ctc	82	82	B.1.1.517	0.557823
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	79	79	C.1.2	0.33617
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	77	77	B.1.1.519	0.003058
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	76	76	B.1.1.302	0.157676
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	74	74	B.1.575	0.022451
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	71	71	AY.119	0.002507
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	70	70	B.1.1.317	0.028818
ORF1ab/nsp14A2-B	326	F326S	tTc	tCc	64	64	B.1.1.7	0.000057
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	54	54	B.1.351	0.001605
ORF1ab/nsp14A2-B	326	F326I	Ttc	Atc	51	53	All	0.00001
ORF1ab/nsp14A2-B	326	F326I	TtC	AtT	2	53	All	0
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	49	49	B.1.596	0.00427
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	47	47	B.1.429	0.001106
ORF1ab/nsp14A2-B	326	F326L	Ttc	Ctc	44	46	B.1.1.7	0.000039
ORF1ab/nsp14A2-B	326	F326L	ttC	ttA	2	46	B.1.1.7	0.000002
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	43	43	AY.102	0.00114
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	43	43	AY.46	0.004475
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	43	43	B.1.160	0.001341
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	42	42	B.1.1.70	0.014325
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	37	37	B.1.619	0.03223
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	35	35	AY.39.1	0.001386
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	34	34	AY.39	0.00084
ORF1ab/nsp14A2-B	326	F326Y	tTc	tAc	33	33	All	0.000006
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	33	33	AY.33	0.002204
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	31	31	B.1.1.352	0.96875
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	31	31	B.1.577	0.021306
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	30	30	AY.9.2	0.001102
ORF1ab/nsp14A2-B	326	F326L	Ttc	Ctc	30	30	B.1.1.39	0.015291
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	30	30	B.1.221	0.002131
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	26	26	B.1.234	0.003431
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	25	25	AD.2	0.005474
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	25	25	AY.117	0.002113
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	25	25	B.1.1.222	0.0051
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	24	24	AY.98	0.001896
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	24	24	AZ.1	0.020815
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	24	24	B.1.258	0.001597
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	24	24	B.1.611	0.96
ORF1ab/nsp14A2-B	326	F326del	TTC	---	23	23	All	0.000004
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	23	23	AY.3.1	0.001961
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	22	22	AY.75	0.001232
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	22	22	B.1.324	0.035313
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	21	21	AY.26	0.000595
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	21	21	AY.54	0.002002
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	21	21	B.1.243	0.001461
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	20	20	AY.92	0.005745
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	19	19	AY.108	0.020948
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	19	19	AY.5	0.000392
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	19	19	P.1.14	0.000908
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	18	18	AY.120	0.000669
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	18	18	B.1.621	0.001593
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	18	18	R.1	0.00162
ORF1ab/nsp14A2-B	326	F326L	Ttc	Ctc	17	17	B.1.1.222	0.003468
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	16	16	B.1.1.397	0.036036
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	15	15	AY.110	0.00169
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	15	15	AY.42	0.000603
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	14	14	AY.20	0.000544
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	14	14	AY.47	0.000435
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	14	14	AY.62	0.0061
ORF1ab/nsp14A2-B	326	F326Y	tTc	tAc	14	14	B.1.258.3	0.023451
ORF1ab/nsp14A2-B	326	F326L	Ttc	Ctc	12	13	AY.4	0.000019
ORF1ab/nsp14A2-B	326	F326L	ttC	ttA	1	13	AY.4	0.000002
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	13	13	B.1.1.33	0.005471
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	13	13	B.1.409	0.010156
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	12	12	AY.114	0.002773
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	12	12	AY.4.2	0.00026
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	12	12	AY.99.2	0.001106
ORF1ab/nsp14A2-B	326	F326S	tTc	tCc	12	12	B.1	0.00011
ORF1ab/nsp14A2-B	326	F326del	TTC	---	12	12	B.1.1.7	0.000011
ORF1ab/nsp14A2-B	326	F326L	ttC	ttA	12	12	B.1.177	0.000158
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	12	12	B.1.36	0.001751
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	12	12	B.1.427	0.000606
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	12	12	B.1.499	0.012605
ORF1ab/nsp14A2-B	326	F326S	tTc	tCc	11	12	D.2	0.000825
ORF1ab/nsp14A2-B	326	F326S	tTC	tCG	1	12	D.2	0.000075
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	11	11	AY.14	0.000968
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	11	11	B.1.617.1	0.001419
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	11	11	D.2	0.000825
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	10	10	AY.13	0.00161
ORF1ab/nsp14A2-B	326	F326I	Ttc	Atc	10	10	AY.4	0.000016
ORF1ab/nsp14A2-B	326	F326I	Ttc	Atc	10	10	B.1.499	0.010504
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	9	9	AY.29	0.000142
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	9	9	B.1.1.83	0.02439
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	9	9	C.36.3.1	0.024457
ORF1ab/nsp14A2-B	326	F326V	Ttc	Gtc	7	8	All	0.000001
ORF1ab/nsp14A2-B	326	F326V	TtC	GtT	1	8	All	0
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	8	8	AY.23	0.000558
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	8	8	AY.6	0.000329
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	8	8	B.1.1.318	0.002414
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	8	8	B.1.177.32	0.010796
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	7	7	AS.1	0.066667
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	7	7	AY.121	0.000947
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	7	7	AY.46.4	0.001152
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	7	7	AY.71	0.003325
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	7	7	B.1.177.43	0.01034
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	7	7	B.1.258.17	0.000728
ORF1ab/nsp14A2-B	326	F326L	Ttc	Ctc	7	7	B.1.429	0.000165
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	7	7	B.1.588	0.006369
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	7	7	P.2	0.001306
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	6	6	AY.27	0.000388
ORF1ab/nsp14A2-B	326	F326I	Ttc	Atc	6	6	AY.43	0.000027
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	6	6	AY.46.6	0.000433
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	6	6	AY.72	0.008163
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	6	6	AY.9	0.000406
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	6	6	B	0.000767
ORF1ab/nsp14A2-B	326	F326L	ttC	ttA	5	6	B.1	0.000046
ORF1ab/nsp14A2-B	326	F326L	Ttc	Ctc	1	6	B.1	0.000009
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	6	6	B.1.145	0.315789
ORF1ab/nsp14A2-B	326	F326I	Ttc	Atc	6	6	B.1.177.60	0.001311
ORF1ab/nsp14A2-B	326	F326Y	tTc	tAc	6	6	B.1.2	0.000053
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	6	6	B.1.36.17	0.002964
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	6	6	C.37	0.000696
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	6	6	P.1.17	0.000971
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	6	6	Q.1	0.000758
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	5	5	AY.35	0.001165
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	5	5	AY.5.1	0.018797
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	5	5	AY.79	0.006053
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	5	5	B.1.1.409	0.014164
ORF1ab/nsp14A2-B	326	F326S	tTc	tCc	5	5	B.1.160	0.000156
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	5	5	B.1.177.4	0.001055
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	5	5	B.1.177.80	0.00956
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	5	5	B.1.369	0.001426
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	5	5	B.1.509	0.004329
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	5	5	B.1.621.1	0.002529
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	5	5	C.1	0.011962
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	5	5	P.1.1	0.001588
ORF1ab/nsp14A2-B	326	F326del1	Ttc	-tc	2	4	All	0
ORF1ab/nsp14A2-B	326	F326del1	ttC	tt-	1	4	All	0
ORF1ab/nsp14A2-B	326	F326del1	TtC	-tT	1	4	All	0
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	4	4	AY.111	0.000733
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	4	4	AY.16	0.001519
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	4	4	AY.61	0.000419
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	4	4	AY.84	0.00175
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	4	4	AY.85	0.001709
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	4	4	AY.98.1	0.000194
ORF1ab/nsp14A2-B	326	F326I	Ttc	Atc	4	4	B.1.1.214	0.000222
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	4	4	B.1.1.37	0.000771
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	4	4	B.1.1.448	0.00813
ORF1ab/nsp14A2-B	326	F326I	Ttc	Atc	4	4	B.1.1.7	0.000004
ORF1ab/nsp14A2-B	326	F326L	Ttc	Ctc	4	4	B.1.177.12	0.000607
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	4	4	B.1.311	0.001098
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	4	4	B.1.361	0.005155
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	4	4	B.52	0.040404
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	4	4	P.1.10	0.001078
ORF1ab/nsp14A2-B	326	F326C	tTc	tGc	3	3	All	0.000001
ORF1ab/nsp14A2-B	326	F326L	Ttc	Ctc	3	3	AY.103	0.000019
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	3	3	AY.113	0.000427
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	3	3	AY.16.1	0.00141
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	3	3	AY.32	0.001597
ORF1ab/nsp14A2-B	326	F326L	ttC	ttA	3	3	AY.43	0.000013
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	3	3	AY.45	0.000365
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	3	3	AY.46.5	0.000595
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	3	3	AY.69	0.00056
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	3	3	AY.7.1	0.000338
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	3	3	AY.74	0.000347
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	3	3	B.1.1.141	0.006036
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	3	3	B.1.1.153	0.003286
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	3	3	B.1.1.284	0.000322
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	3	3	B.1.1.311	0.001074
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	3	3	B.1.1.416	0.002715
ORF1ab/nsp14A2-B	326	F326S	tTc	tCc	3	3	B.1.1.434	0.001046
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	3	3	B.1.147	0.002268
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	3	3	B.1.177.16	0.001993
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	3	3	B.1.177.60	0.000655
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	3	3	B.1.177.83	0.004444
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	3	3	B.1.214.2	0.001799
ORF1ab/nsp14A2-B	326	F326L	Ttc	Ctc	3	3	B.1.258	0.0002
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	3	3	B.1.36.29	0.001552
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	3	3	B.1.36.31	0.005254
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	3	3	B.1.36.8	0.003
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	3	3	B.1.404	0.003906
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	3	3	B.1.595	0.000783
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	3	3	B.1.595.1	0.017544
ORF1ab/nsp14A2-B	326	F326I	Ttc	Atc	2	3	B.1.617.2	0.000008
ORF1ab/nsp14A2-B	326	F326I	TtC	AtT	1	3	B.1.617.2	0.000004
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	3	3	B.1.637	0.000219
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	3	3	P.1.15	0.000697
ORF1ab/nsp14A2-B	326	F326L	Ttc	Ctc	3	3	Q.8	0.000495
ORF1ab/nsp14A2-B	326	F326Y	tTc	tAc	2	2		0.111111
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	2	2	A.1	0.000564
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	2	2	A.24	0.142857
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	2	2	AU.3	0.004219
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	2	2	AY.1	0.000791
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	2	2	AY.101	0.000981
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	2	2	AY.104	0.003968
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	2	2	AY.23.1	0.000835
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	2	2	AY.28	0.003781
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	2	2	AY.48	0.00093
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	2	2	AY.5.3	0.000675
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	2	2	AY.53	0.000575
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	2	2	AY.7	0.000392
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	2	2	AY.95	0.001522
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	2	2	B.1.1.170	0.002494
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	2	2	B.1.1.205	0.007435
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	2	2	B.1.1.39	0.001019
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	2	2	B.1.1.50	0.001358
ORF1ab/nsp14A2-B	326	F326L	ttC	ttA	1	2	B.1.1.519	0.00004
ORF1ab/nsp14A2-B	326	F326L	Ttc	Ctc	1	2	B.1.1.519	0.00004
ORF1ab/nsp14A2-B	326	F326V	Ttc	Gtc	2	2	B.1.1.7	0.000002
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	2	2	B.1.104	0.00738
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	2	2	B.1.110.3	0.001437
ORF1ab/nsp14A2-B	326	F326del	TTC	---	2	2	B.1.177	0.000026
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	2	2	B.1.177.50	0.00939
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	2	2	B.1.177.6	0.001953
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	2	2	B.1.177.69	0.002967
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	2	2	B.1.177.7	0.00033
ORF1ab/nsp14A2-B	326	F326L	Ttc	Ctc	2	2	B.1.177.75	0.002081
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	2	2	B.1.177.8	0.001505
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	2	2	B.1.177.86	0.000367
ORF1ab/nsp14A2-B	326	F326I	Ttc	Atc	2	2	B.1.2	0.000018
ORF1ab/nsp14A2-B	326	F326L	Ttc	Ctc	2	2	B.1.2	0.000018
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	2	2	B.1.240	0.000431
ORF1ab/nsp14A2-B	326	F326S	tTc	tCc	2	2	B.1.265	0.002541
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	2	2	B.1.332	0.006993
ORF1ab/nsp14A2-B	326	F326S	tTC	tCT	1	2	B.1.351	0.00003
ORF1ab/nsp14A2-B	326	F326S	tTc	tCc	1	2	B.1.351	0.00003
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	2	2	B.1.466.2	0.000782
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	2	2	B.1.469	0.00722
ORF1ab/nsp14A2-B	326	F326S	tTc	tCc	2	2	B.1.526	0.000047
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	2	2	B.1.545	0.028986
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	2	2	B.1.556	0.015038
ORF1ab/nsp14A2-B	326	F326L	Ttc	Ctc	2	2	B.1.587	0.003795
ORF1ab/nsp14A2-B	326	F326L	Ttc	Ctc	2	2	B.1.609	0.000959
ORF1ab/nsp14A2-B	326	F326del	TTC	---	2	2	B.1.617.2	0.000008
ORF1ab/nsp14A2-B	326	F326Y	tTc	tAc	2	2	B.1.617.2	0.000008
ORF1ab/nsp14A2-B	326	F326del1	Ttc	-tc	2	2	B.1.627	0.00404
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	2	2	B.1.628	0.000705
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	2	2	B.23	0.005848
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	2	2	C.35	0.001548
ORF1ab/nsp14A2-B	326	F326V	TtC	GtT	1	2	D.2	0.000075
ORF1ab/nsp14A2-B	326	F326V	Ttc	Gtc	1	2	D.2	0.000075
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	2	2	L.3	0.007092
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	2	2	Q.8	0.00033
ORF1ab/nsp14A2-B	326	F326L	ttC	ttA	1	1	A	0.000387
ORF1ab/nsp14A2-B	326	F326I	Ttc	Atc	1	1	A	0.000387
ORF1ab/nsp14A2-B	326	F326I	Ttc	Atc	1	1	A.1	0.000282
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	1	1	A.2.5	0.000499
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	1	1	A.3	0.002096
ORF1ab/nsp14A2-B	326	F326T	TTc	ACc	1	1	All	0
ORF1ab/nsp14A2-B	326	F326del2	tTC	t--	1	1	All	0
ORF1ab/nsp14A2-B	326	F326I	TtC	AtT	1	1	AU.3	0.00211
ORF1ab/nsp14A2-B	326	F326S	tTc	tCc	1	1	AY.1	0.000396
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	1	1	AY.105	0.000643
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	1	1	AY.106	0.000335
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	1	1	AY.116	0.000287
ORF1ab/nsp14A2-B	326	F326L	Ttc	Ctc	1	1	AY.12	0.000316
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	1	1	AY.19	0.00114
ORF1ab/nsp14A2-B	326	F326I	Ttc	Atc	1	1	AY.20	0.000039
ORF1ab/nsp14A2-B	326	F326L	Ttc	Ctc	1	1	AY.23	0.00007
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	1	1	AY.24	0.000431
ORF1ab/nsp14A2-B	326	F326V	Ttc	Gtc	1	1	AY.25	0.000006
ORF1ab/nsp14A2-B	326	F326S	tTc	tCc	1	1	AY.26	0.000028
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	1	1	AY.29.1	0.000221
ORF1ab/nsp14A2-B	326	F326V	Ttc	Gtc	1	1	AY.3	0.00001
ORF1ab/nsp14A2-B	326	F326I	Ttc	Atc	1	1	AY.3	0.00001
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	1	1	AY.30	0.000396
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	1	1	AY.34.1	0.00051
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	1	1	AY.36	0.000148
ORF1ab/nsp14A2-B	326	F326S	tTc	tCc	1	1	AY.39	0.000025
ORF1ab/nsp14A2-B	326	F326L	ttC	ttA	1	1	AY.39	0.000025
ORF1ab/nsp14A2-B	326	F326S	tTc	tCc	1	1	AY.39.1	0.00004
ORF1ab/nsp14A2-B	326	F326C	tTc	tGc	1	1	AY.4	0.000002
ORF1ab/nsp14A2-B	326	F326Y	tTc	tAc	1	1	AY.4	0.000002
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	1	1	AY.4.1	0.000737
ORF1ab/nsp14A2-B	326	F326Y	tTc	tAc	1	1	AY.4.2	0.000022
ORF1ab/nsp14A2-B	326	F326L	ttC	ttG	1	1	AY.4.5	0.000107
ORF1ab/nsp14A2-B	326	F326S	tTc	tCc	1	1	AY.4.5	0.000107
ORF1ab/nsp14A2-B	326	F326L	Ttc	Ctc	1	1	AY.42	0.00004
ORF1ab/nsp14A2-B	326	F326Y	tTc	tAc	1	1	AY.43	0.000004
ORF1ab/nsp14A2-B	326	F326S	tTc	tCc	1	1	AY.44	0.000006
ORF1ab/nsp14A2-B	326	F326Y	tTc	tAc	1	1	AY.44	0.000006
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	1	1	AY.46.3	0.000934
ORF1ab/nsp14A2-B	326	F326I	Ttc	Atc	1	1	AY.47	0.000031
ORF1ab/nsp14A2-B	326	F326del1	ttC	tt-	1	1	AY.48	0.000465
ORF1ab/nsp14A2-B	326	F326I	Ttc	Atc	1	1	AY.5	0.000021
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	1	1	AY.50	0.000799
ORF1ab/nsp14A2-B	326	F326L	ttC	ttA	1	1	AY.52	0.000814
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	1	1	AY.52	0.000814
ORF1ab/nsp14A2-B	326	F326S	tTc	tCc	1	1	AY.54	0.000095
ORF1ab/nsp14A2-B	326	F326L	Ttc	Ctc	1	1	AY.59	0.00053
ORF1ab/nsp14A2-B	326	F326S	tTc	tCc	1	1	AY.61	0.000105
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	1	1	AY.68	0.000274
ORF1ab/nsp14A2-B	326	F326L	ttC	ttA	1	1	AY.72	0.001361
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	1	1	AY.75.1	0.00018
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	1	1	AY.76	0.004831
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	1	1	AY.8	0.000606
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	1	1	AY.82	0.001357
ORF1ab/nsp14A2-B	326	F326L	ttC	ttA	1	1	AY.9	0.000068
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	1	1	AY.9.1	0.000084
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	1	1	AY.90	0.000684
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	1	1	AY.99.1	0.001553
ORF1ab/nsp14A2-B	326	F326V	Ttc	Gtc	1	1	B	0.000128
ORF1ab/nsp14A2-B	326	F326L	ttC	ttA	1	1	B	0.000128
ORF1ab/nsp14A2-B	326	F326V	Ttc	Gtc	1	1	B.1.1	0.000018
ORF1ab/nsp14A2-B	326	F326L	Ttc	Ctc	1	1	B.1.1.1	0.000327
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	1	1	B.1.1.1	0.000327
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	1	1	B.1.1.10	0.001115
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	1	1	B.1.1.138	0.006061
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	1	1	B.1.1.171	0.003676
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	1	1	B.1.1.172	0.018182
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	1	1	B.1.1.203	0.016949
ORF1ab/nsp14A2-B	326	F326L	ttC	ttG	1	1	B.1.1.214	0.000055
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	1	1	B.1.1.214	0.000055
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	1	1	B.1.1.216	0.00089
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	1	1	B.1.1.217	0.003636
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	1	1	B.1.1.228	0.003049
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	1	1	B.1.1.232	0.001815
ORF1ab/nsp14A2-B	326	F326S	tTc	tCc	1	1	B.1.1.25	0.000569
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	1	1	B.1.1.255	0.00303
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	1	1	B.1.1.263	0.001558
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	1	1	B.1.1.273	0.006757
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	1	1	B.1.1.277	0.000759
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	1	1	B.1.1.279	0.001121
ORF1ab/nsp14A2-B	326	F326S	tTc	tCc	1	1	B.1.1.28	0.000311
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	1	1	B.1.1.28	0.000311
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	1	1	B.1.1.291	0.000742
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	1	1	B.1.1.294	0.001266
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	1	1	B.1.1.305	0.003861
ORF1ab/nsp14A2-B	326	F326del	TTC	---	1	1	B.1.1.306	0.000438
ORF1ab/nsp14A2-B	326	F326del	TTC	---	1	1	B.1.1.311	0.000358
ORF1ab/nsp14A2-B	326	F326Y	tTc	tAc	1	1	B.1.1.326	0.001761
ORF1ab/nsp14A2-B	326	F326S	tTc	tCc	1	1	B.1.1.33	0.000421
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	1	1	B.1.1.348	0.000796
ORF1ab/nsp14A2-B	326	F326L	Ttc	Ctc	1	1	B.1.1.372	0.000689
ORF1ab/nsp14A2-B	326	F326L	Ttc	Ctc	1	1	B.1.1.397	0.002252
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	1	1	B.1.1.406	0.006494
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	1	1	B.1.1.420	0.001006
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	1	1	B.1.1.429	0.004608
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	1	1	B.1.1.432	0.001266
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	1	1	B.1.1.452	0.111111
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	1	1	B.1.1.464	0.001473
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	1	1	B.1.1.51	0.001718
ORF1ab/nsp14A2-B	326	F326C	tTc	tGc	1	1	B.1.1.519	0.00004
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	1	1	B.1.1.63	0.000386
ORF1ab/nsp14A2-B	326	F326T	TTc	ACc	1	1	B.1.1.7	0.000001
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	1	1	B.1.105	0.009615
ORF1ab/nsp14A2-B	326	F326S	tTc	tCc	1	1	B.1.111	0.001175
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	1	1	B.1.12	0.008
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	1	1	B.1.14	0.017544
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	1	1	B.1.143	0.021277
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	1	1	B.1.160.15	0.00495
ORF1ab/nsp14A2-B	326	F326S	tTc	tCc	1	1	B.1.177	0.000013
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	1	1	B.1.177.12	0.000152
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	1	1	B.1.177.18	0.00116
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	1	1	B.1.177.21	0.000076
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	1	1	B.1.177.35	0.000691
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	1	1	B.1.177.42	0.000894
ORF1ab/nsp14A2-B	326	F326L	Ttc	Ctc	1	1	B.1.177.71	0.010101
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	1	1	B.1.177.75	0.001041
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	1	1	B.1.177.78	0.009709
ORF1ab/nsp14A2-B	326	F326Y	tTc	tAc	1	1	B.1.177.8	0.000752
ORF1ab/nsp14A2-B	326	F326Y	tTc	tAc	1	1	B.1.177.80	0.001912
ORF1ab/nsp14A2-B	326	F326Y	tTc	tAc	1	1	B.1.177.81	0.000189
ORF1ab/nsp14A2-B	326	F326del	TTC	---	1	1	B.1.177.83	0.001481
ORF1ab/nsp14A2-B	326	F326L	ttC	ttA	1	1	B.1.194	0.04
ORF1ab/nsp14A2-B	326	F326S	tTc	tCc	1	1	B.1.2	0.000009
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	1	1	B.1.222	0.001692
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	1	1	B.1.236	0.002053
ORF1ab/nsp14A2-B	326	F326S	tTc	tCc	1	1	B.1.243	0.00007
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	1	1	B.1.256	0.017241
ORF1ab/nsp14A2-B	326	F326S	tTc	tCc	1	1	B.1.258	0.000067
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	1	1	B.1.264	0.012346
ORF1ab/nsp14A2-B	326	F326S	tTc	tCc	1	1	B.1.289	0.00266
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	1	1	B.1.3	0.002618
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	1	1	B.1.305	0.002151
ORF1ab/nsp14A2-B	326	F326L	Ttc	Ctc	1	1	B.1.351	0.00003
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	1	1	B.1.351.3	0.000876
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	1	1	B.1.36.1	0.00114
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	1	1	B.1.36.27	0.000763
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	1	1	B.1.36.28	0.005747
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	1	1	B.1.36.36	0.000602
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	1	1	B.1.36.39	0.002217
ORF1ab/nsp14A2-B	326	F326S	tTc	tCc	1	1	B.1.360	0.012658
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	1	1	B.1.362	0.001541
ORF1ab/nsp14A2-B	326	F326L	ttC	ttA	1	1	B.1.369	0.000285
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	1	1	B.1.375	0.00082
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	1	1	B.1.389	0.001002
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	1	1	B.1.391	0.001127
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	1	1	B.1.399	0.001934
ORF1ab/nsp14A2-B	326	F326L	ttC	ttA	1	1	B.1.400	0.000429
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	1	1	B.1.400	0.000429
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	1	1	B.1.405	0.012346
ORF1ab/nsp14A2-B	326	F326del2	tTC	t--	1	1	B.1.415	0.014286
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	1	1	B.1.416.1	0.001563
ORF1ab/nsp14A2-B	326	F326S	tTc	tCc	1	1	B.1.429	0.000024
ORF1ab/nsp14A2-B	326	F326C	tTc	tGc	1	1	B.1.438.1	0.000107
ORF1ab/nsp14A2-B	326	F326L	Ttc	Ctc	1	1	B.1.503	0.002488
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	1	1	B.1.517	0.000427
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	1	1	B.1.523	0.002451
ORF1ab/nsp14A2-B	326	F326L	Ttc	Ctc	1	1	B.1.525	0.000113
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	1	1	B.1.549	0.007194
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	1	1	B.1.551	0.00129
ORF1ab/nsp14A2-B	326	F326del	TTC	---	1	1	B.1.561	0.000397
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	1	1	B.1.567	0.003333
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	1	1	B.1.570	0.002941
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	1	1	B.1.575.1	0.002439
ORF1ab/nsp14A2-B	326	F326L	ttC	ttA	1	1	B.1.596	0.000087
ORF1ab/nsp14A2-B	326	F326L	Ttc	Ctc	1	1	B.1.617.2	0.000004
ORF1ab/nsp14A2-B	326	F326del1	TtC	-tT	1	1	B.1.617.2	0.000004
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	1	1	B.1.623	0.000536
ORF1ab/nsp14A2-B	326	F326L	ttC	ttA	1	1	B.1.623	0.000536
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	1	1	B.1.634	0.003425
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	1	1	B.1.93	0.000934
ORF1ab/nsp14A2-B	326	F326S	tTc	tCc	1	1	B.3	0.000831
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	1	1	B.39	0.002331
ORF1ab/nsp14A2-B	326	F326del	TTC	---	1	1	C.17	0.055556
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	1	1	C.26	0.007353
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	1	1	C.36	0.000911
ORF1ab/nsp14A2-B	326	F326Y	tTc	tAc	1	1	C.36	0.000911
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	1	1	C.36.3	0.000567
ORF1ab/nsp14A2-B	326	F326S	tTc	tCc	1	1	C.37	0.000116
ORF1ab/nsp14A2-B	326	F326L	ttC	ttG	1	1	D.2	0.000075
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	1	1	M.2	0.083333
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	1	1	N.1	0.016949
ORF1ab/nsp14A2-B	326	F326S	tTc	tCc	1	1	N.2	0.038462
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	1	1	N.3	0.005814
ORF1ab/nsp14A2-B	326	F326S	tTc	tCc	1	1	P.1	0.000016
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	1	1	P.1.12	0.000484
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	1	1	P.1.13	0.000898
ORF1ab/nsp14A2-B	326	F326I	Ttc	Atc	1	1	P.1.15	0.000232
ORF1ab/nsp14A2-B	326	F326del	TTC	---	1	1	P.1.15	0.000232
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	1	1	P.1.2	0.001156
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	1	1	P.1.9	0.004808
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	1	1	P.3	0.001595
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	1	1	P.7	0.004367
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	1	1	Q.4	0.000455
ORF1ab/nsp14A2-B	326	F326F	ttC	ttT	1	1	Q.7	0.001111
ORF1ab/nsp14A2-B	326	F326del	TTC	---	1	1	Q.8	0.000165
ORF1ab/nsp14A2-B	326	F326L	ttC	ttA	1	1	W.3	0.005263

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.