CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp14A2-B : CodonNum = 324

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF1ab/nsp14A2-B	324	D324D	D6249D	syn	gaC	gaT	8056	8056	1	19009-19011
ORF1ab/nsp14A2-B	324	D324Y	D6249Y	nonsyn	Gac	Tac	7932	7928	0.999496	19009-19011
ORF1ab/nsp14A2-B	324	D324Y	D6249Y	nonsyn	GaC	TaT	7932	4	0.000504286	19009-19011
ORF1ab/nsp14A2-B	324	D324N	D6249N	nonsyn	Gac	Aac	4578	4578	1	19009-19011
ORF1ab/nsp14A2-B	324	D324E	D6249E	nonsyn	gaC	gaA	1218	1214	0.996716	19009-19011
ORF1ab/nsp14A2-B	324	D324E	D6249E	nonsyn	gaC	gaG	1218	4	0.00328407	19009-19011
ORF1ab/nsp14A2-B	324	D324G	D6249G	nonsyn	gAc	gGc	124	122	0.983871	19009-19011
ORF1ab/nsp14A2-B	324	D324G	D6249G	nonsyn	gAC	gGT	124	2	0.016129	19009-19011
ORF1ab/nsp14A2-B	324	D324del	D6249del	del	GAC	---	25	25	1	19009-19011
ORF1ab/nsp14A2-B	324	D324S	D6249S	nonsyn	GAc	AGc	15	15	1	19009-19011
ORF1ab/nsp14A2-B	324	D324A	D6249A	nonsyn	gAc	gCc	12	11	0.916667	19009-19011
ORF1ab/nsp14A2-B	324	D324A	D6249A	nonsyn	gAC	gCA	12	1	0.0833333	19009-19011
ORF1ab/nsp14A2-B	324	D324H	D6249H	nonsyn	Gac	Cac	11	11	1	19009-19011
ORF1ab/nsp14A2-B	324	D324del1	D6249del1	del	Gac	-ac	4	2	0.5	19009-19011
ORF1ab/nsp14A2-B	324	D324C	D6249C	nonsyn	GAC	TGT	4	2	0.5	19009-19011
ORF1ab/nsp14A2-B	324	D324C	D6249C	nonsyn	GAc	TGc	4	2	0.5	19009-19011
ORF1ab/nsp14A2-B	324	D324del1	D6249del1	del	gaC	ga-	4	1	0.25	19009-19011
ORF1ab/nsp14A2-B	324	D324del1	D6249del1	del	GaC	Aa-	4	1	0.25	19009-19011
ORF1ab/nsp14A2-B	324	D324del2	D6249del2	del	gAC	g--	2	2	1	19009-19011
ORF1ab/nsp14A2-B	324	D324T	D6249T	nonsyn	GAc	ACc	1	1	1	19009-19011
ORF1ab/nsp14A2-B	324	D324I	D6249I	nonsyn	GAC	ATT	1	1	1	19009-19011

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	8056	8056	All	0.001541
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	7928	7932	All	0.001516
ORF1ab/nsp14A2-B	324	D324Y	GaC	TaT	4	7932	All	0.000001
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	4759	4761	AY.9	0.321684
ORF1ab/nsp14A2-B	324	D324Y	GaC	TaT	2	4761	AY.9	0.000135
ORF1ab/nsp14A2-B	324	D324N	Gac	Aac	4578	4578	All	0.000876
ORF1ab/nsp14A2-B	324	D324N	Gac	Aac	4172	4172	AY.4	0.006493
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	2429	2429	B.1.1.7	0.002174
ORF1ab/nsp14A2-B	324	D324E	gaC	gaA	1214	1218	All	0.000232
ORF1ab/nsp14A2-B	324	D324E	gaC	gaG	4	1218	All	0.000001
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	988	988	AY.4	0.001538
ORF1ab/nsp14A2-B	324	D324E	gaC	gaA	515	515	B.1.1.222	0.105059
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	360	360	B.1.617.2	0.001356
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	338	338	B.1.1.7	0.000303
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	303	303	B.1.1.258	0.986971
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	273	273	AY.44	0.001662
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	263	263	B.1.1	0.004771
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	230	230	B.1.617.2	0.000866
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	220	220	AY.71	0.104513
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	210	210	B.1.527	0.777778
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	205	205	AY.65	0.109275
ORF1ab/nsp14A2-B	324	D324E	gaC	gaA	192	192	B.1.177	0.002528
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	181	181	AY.4	0.000282
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	172	172	AY.65	0.091684
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	153	153	P.1	0.00241
ORF1ab/nsp14A2-B	324	D324E	gaC	gaA	140	140	B.1.617.2	0.000527
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	133	133	AY.26	0.003765
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	131	131	B.1	0.0012
ORF1ab/nsp14A2-B	324	D324G	gAc	gGc	122	124	All	0.000023
ORF1ab/nsp14A2-B	324	D324G	gAC	gGT	2	124	All	0
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	107	107	B.1.2	0.000942
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	101	101	AY.25	0.000607
ORF1ab/nsp14A2-B	324	D324E	gaC	gaA	99	100	AY.43	0.000439
ORF1ab/nsp14A2-B	324	D324E	gaC	gaG	1	100	AY.43	0.000004
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	97	97	B.1	0.000888
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	97	97	B.1.1.356	0.82906
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	96	96	AY.43	0.000425
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	96	96	B.1.177.4	0.020262
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	94	94	AY.20	0.003653
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	91	91	Q.3	0.013198
ORF1ab/nsp14A2-B	324	D324N	Gac	Aac	90	90	B.1.1.207	0.106383
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	89	89	AY.103	0.000553
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	89	89	AY.7.1	0.01003
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	84	84	AY.46	0.008743
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	84	84	B.1.240	0.018107
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	79	79	B.1.311	0.021691
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	78	78	B.1.429	0.001835
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	76	76	B.1.523	0.186275
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	75	75	B.1.177.12	0.011377
ORF1ab/nsp14A2-B	324	D324N	Gac	Aac	74	74	B.1.1.222	0.015096
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	70	70	B.1.36	0.010213
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	69	69	B.1.243	0.004801
ORF1ab/nsp14A2-B	324	D324N	Gac	Aac	68	68	B.1.1.7	0.000061
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	63	63	B.1.1.222	0.012852
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	59	59	AZ.3	0.089666
ORF1ab/nsp14A2-B	324	D324N	Gac	Aac	57	57	B.1.617.2	0.000215
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	57	57	C.37	0.006616
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	56	56	B.1.221	0.003978
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	55	55	B.1.596	0.004793
ORF1ab/nsp14A2-B	324	D324E	gaC	gaA	53	53	AY.4	0.000082
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	50	50	AY.25	0.000301
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	50	50	AY.43	0.000222
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	50	50	B.1.1.311	0.017908
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	45	45	AY.29	0.00071
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	44	44	AY.75.1	0.007934
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	44	44	D.2	0.003302
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	43	43	AY.61	0.004505
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	43	43	B.1.1	0.00078
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	41	41	AY.33	0.002738
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	41	41	B.1.1.222	0.008364
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	40	40	B.1.623	0.021459
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	39	39	B.1.2	0.000343
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	38	38	B.1.177	0.0005
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	36	36	AY.26	0.001019
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	36	36	AY.4.2	0.000781
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	36	36	AY.47	0.00112
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	36	36	B.1.160	0.001123
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	32	32	AY.101	0.015694
ORF1ab/nsp14A2-B	324	D324N	Gac	Aac	32	32	AY.39	0.000791
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	32	32	AY.73	0.021291
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	32	32	P.1	0.000504
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	30	30	AY.102	0.000795
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	30	30	B.1.1.1	0.009801
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	30	30	B.1.1.519	0.001191
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	29	29	B.1.1.291	0.021529
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	28	28	AY.33	0.00187
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	27	27	AY.39	0.000667
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	27	27	B.1.453	0.087379
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	27	27	B.1.637	0.001973
ORF1ab/nsp14A2-B	324	D324G	gAc	gGc	26	26	B.1.1.7	0.000023
ORF1ab/nsp14A2-B	324	D324del	GAC	---	25	25	All	0.000005
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	25	25	AY.103	0.000155
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	25	25	AY.23	0.001744
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	24	24	B.1.526	0.000564
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	23	23	AY.3	0.000229
ORF1ab/nsp14A2-B	324	D324E	gaC	gaA	23	23	AY.44	0.00014
ORF1ab/nsp14A2-B	324	D324G	gAc	gGc	23	23	AY.81	0.045817
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	23	23	B.1.351	0.000684
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	23	23	B.1.595	0.006002
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	22	22	AK.2	1
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	22	22	AY.102	0.000583
ORF1ab/nsp14A2-B	324	D324E	gaC	gaA	22	22	AY.34.1	0.011219
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	22	22	B.1.621	0.001947
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	21	21	B.1.177.8	0.015801
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	20	20	B.1.177.81	0.003786
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	19	19	AY.13	0.003059
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	19	19	AY.47	0.000591
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	19	19	B.1.595	0.004958
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	19	19	B.1.609	0.009108
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	19	19	Q.8	0.003133
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	18	18	B.1.1.519	0.000715
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	18	18	B.1.340	0.077253
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	18	18	B.1.526	0.000423
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	17	17	B.1.1.306	0.007453
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	17	17	B.1.1.367	0.944444
ORF1ab/nsp14A2-B	324	D324E	gaC	gaA	17	17	B.1.179	0.06391
ORF1ab/nsp14A2-B	324	D324E	gaC	gaA	16	16	AY.102	0.000424
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	16	16	AY.3	0.000159
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	16	16	AY.9.2	0.000588
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	16	16	B.1.160	0.000499
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	16	16	B.1.409	0.0125
ORF1ab/nsp14A2-B	324	D324S	GAc	AGc	15	15	All	0.000003
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	15	15	AY.119	0.00053
ORF1ab/nsp14A2-B	324	D324S	GAc	AGc	15	15	AY.4	0.000023
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	15	15	AY.54	0.00143
ORF1ab/nsp14A2-B	324	D324G	gAc	gGc	15	15	B.1.2	0.000132
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	15	15	B.1.36	0.002189
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	15	15	P.1.13	0.013477
ORF1ab/nsp14A2-B	324	D324E	gaC	gaA	13	14	B.1	0.000119
ORF1ab/nsp14A2-B	324	D324E	gaC	gaG	1	14	B.1	0.000009
ORF1ab/nsp14A2-B	324	D324E	gaC	gaA	12	14	B.1.1.7	0.000011
ORF1ab/nsp14A2-B	324	D324E	gaC	gaG	2	14	B.1.1.7	0.000002
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	14	14	B.1.426	0.014127
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	14	14	B.1.619	0.012195
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	13	13	AY.113	0.001851
ORF1ab/nsp14A2-B	324	D324G	gAc	gGc	13	13	AY.34	0.001261
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	13	13	AY.4.2.1	0.001937
ORF1ab/nsp14A2-B	324	D324N	Gac	Aac	13	13	AY.43	0.000058
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	13	13	B.1.1.270	0.134021
ORF1ab/nsp14A2-B	324	D324del	GAC	---	13	13	B.1.1.7	0.000012
ORF1ab/nsp14A2-B	324	D324A	gAc	gCc	11	12	All	0.000002
ORF1ab/nsp14A2-B	324	D324A	gAC	gCA	1	12	All	0
ORF1ab/nsp14A2-B	324	D324N	Gac	Aac	12	12	AY.4.5	0.00129
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	12	12	AY.4.5	0.00129
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	12	12	AY.5	0.000248
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	12	12	B.1.126	0.015306
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	12	12	P.1.14	0.000574
ORF1ab/nsp14A2-B	324	D324H	Gac	Cac	11	11	All	0.000002
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	11	11	AY.111	0.002015
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	11	11	AY.75	0.000616
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	11	11	AY.92	0.00316
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	11	11	B.1.177	0.000145
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	10	10	AY.120	0.000372
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	10	10	AY.5	0.000206
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	10	10	AY.5.4	0.002767
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	10	10	B.1.1.153	0.010953
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	10	10	B.1.1.37	0.001929
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	10	10	B.1.1.54	0.030211
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	9	9	AY.118	0.000564
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	9	9	AY.28	0.017013
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	9	9	AY.4.2	0.000195
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	9	9	AY.61	0.000943
ORF1ab/nsp14A2-B	324	D324E	gaC	gaA	9	9	B.1.1	0.000163
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	9	9	B.1.1.432	0.011392
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	9	9	B.1.1.434	0.003137
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	9	9	B.1.177.60	0.001966
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	9	9	C.36	0.008197
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	9	9	P.1.14	0.00043
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	9	9	Q.1	0.001137
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	8	8	AY.29	0.000126
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	8	8	AY.3.1	0.000682
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	8	8	AY.32	0.00426
ORF1ab/nsp14A2-B	324	D324N	Gac	Aac	8	8	AY.42	0.000322
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	8	8	AY.46.2	0.005083
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	8	8	B	0.001022
ORF1ab/nsp14A2-B	324	D324N	Gac	Aac	8	8	B.1	0.000073
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	8	8	B.1.177.41	0.02
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	8	8	B.1.36.29	0.004139
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	8	8	B.1.617.1	0.001032
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	7	7	AY.10	0.00371
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	7	7	AY.106	0.002344
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	7	7	AY.27	0.000453
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	7	7	AY.35	0.001631
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	7	7	AY.42	0.000282
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	7	7	AY.44	0.000043
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	7	7	AY.75	0.000392
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	7	7	AY.99.2	0.000645
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	7	7	AY.99.2	0.000645
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	7	7	B.1.1.153	0.007667
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	7	7	B.1.1.446	0.538462
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	7	7	B.1.234	0.000924
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	7	7	B.1.429	0.000165
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	7	7	B.1.595.1	0.040936
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	7	7	D.2	0.000525
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	6	6	AY.100	0.000276
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	6	6	AY.19	0.006842
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	6	6	AY.38	0.002996
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	6	6	AY.39	0.000148
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	6	6	AY.46.6	0.000433
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	6	6	AY.67	0.002786
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	6	6	AY.7	0.001176
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	6	6	AY.75.1	0.001082
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	6	6	B.1.1.28	0.001867
ORF1ab/nsp14A2-B	324	D324N	Gac	Aac	6	6	B.1.1.397	0.013514
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	6	6	B.1.177.73	0.003398
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	6	6	B.1.258.17	0.000624
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	6	6	B.1.293	0.075
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	6	6	B.1.427	0.000303
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	6	6	P.1.7	0.001916
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	5	5	AY.117	0.000423
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	5	5	AY.12	0.00158
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	5	5	AY.23	0.000349
ORF1ab/nsp14A2-B	324	D324E	gaC	gaA	5	5	AY.25	0.00003
ORF1ab/nsp14A2-B	324	D324E	gaC	gaA	5	5	AY.3	0.00005
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	5	5	AY.34	0.000485
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	5	5	AY.42	0.000201
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	5	5	AY.49	0.015974
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	5	5	AY.59	0.002648
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	5	5	AY.7.2	0.002796
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	5	5	AY.98	0.000395
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	5	5	AY.98.1	0.000242
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	5	5	B.1.1.294	0.006329
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	5	5	B.1.139	0.003666
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	5	5	B.1.234	0.00066
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	5	5	B.1.258	0.000333
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	5	5	B.1.351	0.000149
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	5	5	B.1.391	0.005637
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	5	5	B.1.396	0.003529
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	5	5	B.1.575	0.001517
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	5	5	P.1.10	0.001347
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	5	5	Q.1	0.000632
ORF1ab/nsp14A2-B	324	D324G	gAC	gGT	2	4		0.111111
ORF1ab/nsp14A2-B	324	D324C	GAc	TGc	2	4		0.111111
ORF1ab/nsp14A2-B	324	D324Y	GaC	TaT	2	4		0.111111
ORF1ab/nsp14A2-B	324	D324C	GAC	TGT	2	4		0.111111
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	2	4		0.111111
ORF1ab/nsp14A2-B	324	D324G	gAc	gGc	2	4		0.111111
ORF1ab/nsp14A2-B	324	D324C	GAC	TGT	2	4	All	0
ORF1ab/nsp14A2-B	324	D324C	GAc	TGc	2	4	All	0
ORF1ab/nsp14A2-B	324	D324del1	Gac	-ac	2	4	All	0
ORF1ab/nsp14A2-B	324	D324del1	gaC	ga-	1	4	All	0
ORF1ab/nsp14A2-B	324	D324del1	GaC	Aa-	1	4	All	0
ORF1ab/nsp14A2-B	324	D324E	gaC	gaA	4	4	AY.118	0.000251
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	4	4	AY.120	0.000149
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	4	4	AY.14	0.000352
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	4	4	AY.16	0.001519
ORF1ab/nsp14A2-B	324	D324E	gaC	gaA	4	4	AY.20	0.000155
ORF1ab/nsp14A2-B	324	D324E	gaC	gaA	4	4	AY.29	0.000063
ORF1ab/nsp14A2-B	324	D324E	gaC	gaA	4	4	AY.34	0.000388
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	4	4	AY.4.5	0.00043
ORF1ab/nsp14A2-B	324	D324G	gAc	gGc	4	4	AY.4.5	0.00043
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	4	4	AY.51	0.003636
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	4	4	AY.7	0.000784
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	4	4	AY.9.2	0.000147
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	4	4	B.1.1.306	0.001754
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	4	4	B.1.1.63	0.001543
ORF1ab/nsp14A2-B	324	D324A	gAc	gCc	4	4	B.1.1.7	0.000004
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	4	4	B.1.160.16	0.003717
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	4	4	B.1.177.5	0.004969
ORF1ab/nsp14A2-B	324	D324E	gaC	gaA	4	4	B.1.2	0.000035
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	4	4	B.1.232	0.002149
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	4	4	B.1.232	0.002149
ORF1ab/nsp14A2-B	324	D324E	gaC	gaA	4	4	B.1.36	0.000584
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	4	4	B.1.36.22	0.004831
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	4	4	B.1.36.29	0.002069
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	4	4	B.1.39	0.015625
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	4	4	B.1.398	0.011905
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	4	4	B.1.400	0.001716
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	4	4	B.27	0.061538
ORF1ab/nsp14A2-B	324	D324H	Gac	Cac	4	4	C.30	0.006908
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	4	4	C.37.1	0.010471
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	4	4	N.6	0.028369
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	4	4	P.1.15	0.000929
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	4	4	P.1.15	0.000929
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	4	4	P.3	0.00638
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	4	4	R.1	0.00036
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	3	3	AY.10	0.00159
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	3	3	AY.116.1	0.000934
ORF1ab/nsp14A2-B	324	D324G	gAc	gGc	3	3	AY.119	0.000106
ORF1ab/nsp14A2-B	324	D324E	gaC	gaA	3	3	AY.12	0.000948
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	3	3	AY.13	0.000483
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	3	3	AY.24	0.001293
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	3	3	AY.3.1	0.000256
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	3	3	AY.35	0.000699
ORF1ab/nsp14A2-B	324	D324G	gAc	gGc	3	3	AY.4	0.000005
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	3	3	AY.46	0.000312
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	3	3	AY.46.4	0.000494
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	3	3	AY.46.4	0.000494
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	3	3	AY.48	0.001395
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	3	3	AY.6	0.000123
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	3	3	AY.74	0.000347
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	3	3	AY.9.1	0.000251
ORF1ab/nsp14A2-B	324	D324E	gaC	gaA	3	3	AY.92	0.000862
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	3	3	AY.98.1	0.000145
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	3	3	B.1.1.189	0.004539
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	3	3	B.1.1.214	0.000166
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	3	3	B.1.1.216	0.002671
ORF1ab/nsp14A2-B	324	D324E	gaC	gaA	3	3	B.1.1.216	0.002671
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	3	3	B.1.1.225	0.021583
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	3	3	B.1.1.274	0.015152
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	3	3	B.1.1.277	0.002276
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	3	3	B.1.1.317	0.001235
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	3	3	B.1.1.318	0.000905
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	3	3	B.1.1.398	0.009677
ORF1ab/nsp14A2-B	324	D324E	gaC	gaA	3	3	B.1.1.519	0.000119
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	3	3	B.1.1.70	0.001023
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	3	3	B.1.149	0.010274
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	3	3	B.1.177.33	0.004934
ORF1ab/nsp14A2-B	324	D324H	Gac	Cac	3	3	B.1.177.57	0.000843
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	3	3	B.1.221.1	0.008721
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	3	3	B.1.243	0.000209
ORF1ab/nsp14A2-B	324	D324G	gAc	gGc	3	3	B.1.351	0.000089
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	3	3	B.1.438.1	0.000322
ORF1ab/nsp14A2-B	324	D324E	gaC	gaA	3	3	B.1.565	0.002431
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	3	3	B.1.576	0.00272
ORF1ab/nsp14A2-B	324	D324G	gAc	gGc	3	3	B.1.596	0.000261
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	3	3	B.1.596	0.000261
ORF1ab/nsp14A2-B	324	D324G	gAc	gGc	3	3	B.1.617.2	0.000011
ORF1ab/nsp14A2-B	324	D324A	gAc	gCc	3	3	B.1.617.2	0.000011
ORF1ab/nsp14A2-B	324	D324E	gaC	gaA	3	3	B.1.637	0.000219
ORF1ab/nsp14A2-B	324	D324N	Gac	Aac	3	3	P.1.15	0.000697
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	3	3	P.2	0.00056
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	2	2		0.111111
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	2	2	AD.2	0.000438
ORF1ab/nsp14A2-B	324	D324del2	gAC	g--	2	2	All	0
ORF1ab/nsp14A2-B	324	D324E	gaC	gaA	2	2	AY.100	0.000092
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	2	2	AY.106	0.00067
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	2	2	AY.107	0.000932
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	2	2	AY.107	0.000932
ORF1ab/nsp14A2-B	324	D324E	gaC	gaA	2	2	AY.108	0.002205
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	2	2	AY.110	0.000225
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	2	2	AY.116	0.000574
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	2	2	AY.118	0.000125
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	2	2	AY.120.2	0.002571
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	2	2	AY.121	0.000271
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	2	2	AY.121	0.000271
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	2	2	AY.16	0.000759
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	2	2	AY.16.1	0.00094
ORF1ab/nsp14A2-B	324	D324N	Gac	Aac	2	2	AY.33	0.000134
ORF1ab/nsp14A2-B	324	D324E	gaC	gaA	2	2	AY.39	0.000049
ORF1ab/nsp14A2-B	324	D324E	gaC	gaA	2	2	AY.39.1	0.000079
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	2	2	AY.39.1	0.000079
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	2	2	AY.41	0.000588
ORF1ab/nsp14A2-B	324	D324N	Gac	Aac	2	2	AY.44	0.000012
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	2	2	AY.45	0.000243
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	2	2	AY.46.5	0.000397
ORF1ab/nsp14A2-B	324	D324N	Gac	Aac	2	2	AY.53	0.000575
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	2	2	AY.55	0.001835
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	2	2	AY.55	0.001835
ORF1ab/nsp14A2-B	324	D324N	Gac	Aac	2	2	AY.58	0.001815
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	2	2	AY.6	0.000082
ORF1ab/nsp14A2-B	324	D324E	gaC	gaA	2	2	AY.61	0.00021
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	2	2	AY.68	0.000547
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	2	2	AY.68	0.000547
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	2	2	AY.69	0.000373
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	2	2	AY.71	0.00095
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	2	2	AY.84	0.000875
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	2	2	AY.85	0.000854
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	2	2	AY.85	0.000854
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	2	2	AY.88	0.001768
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	2	2	AY.91	0.001461
ORF1ab/nsp14A2-B	324	D324E	gaC	gaA	2	2	AY.98.1	0.000097
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	2	2	B	0.000256
ORF1ab/nsp14A2-B	324	D324E	gaC	gaA	2	2	B	0.000256
ORF1ab/nsp14A2-B	324	D324A	gAC	gCA	1	2	B	0.000128
ORF1ab/nsp14A2-B	324	D324A	gAc	gCc	1	2	B	0.000128
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	2	2	B.1.1.189	0.003026
ORF1ab/nsp14A2-B	324	D324G	gAc	gGc	2	2	B.1.1.222	0.000408
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	2	2	B.1.1.241	0.004141
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	2	2	B.1.1.265	0.006309
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	2	2	B.1.1.27	0.011299
ORF1ab/nsp14A2-B	324	D324E	gaC	gaA	2	2	B.1.1.274	0.010101
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	2	2	B.1.1.284	0.000215
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	2	2	B.1.1.303	0.005525
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	2	2	B.1.1.318	0.000604
ORF1ab/nsp14A2-B	324	D324G	gAc	gGc	2	2	B.1.1.320	0.036364
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	2	2	B.1.1.326	0.003521
ORF1ab/nsp14A2-B	324	D324E	gaC	gaA	2	2	B.1.1.343	0.041667
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	2	2	B.1.1.372	0.001377
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	2	2	B.1.1.39	0.001019
ORF1ab/nsp14A2-B	324	D324G	gAc	gGc	2	2	B.1.1.39	0.001019
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	2	2	B.1.1.398	0.006452
ORF1ab/nsp14A2-B	324	D324E	gaC	gaA	2	2	B.1.1.412	0.015267
ORF1ab/nsp14A2-B	324	D324G	gAc	gGc	2	2	B.1.1.70	0.000682
ORF1ab/nsp14A2-B	324	D324del	GAC	---	2	2	B.1.177	0.000026
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	2	2	B.1.177.17	0.001642
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	2	2	B.1.177.21	0.000153
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	2	2	B.1.177.62	0.002384
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	2	2	B.1.177.75	0.002081
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	2	2	B.1.177.82	0.000955
ORF1ab/nsp14A2-B	324	D324E	gaC	gaA	2	2	B.1.177.87	0.001456
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	2	2	B.1.179	0.007519
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	2	2	B.1.188	0.033333
ORF1ab/nsp14A2-B	324	D324N	Gac	Aac	2	2	B.1.2	0.000018
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	2	2	B.1.221	0.000142
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	2	2	B.1.237	0.00995
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	2	2	B.1.258	0.000133
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	2	2	B.1.258.11	0.000793
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	2	2	B.1.316	0.222222
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	2	2	B.1.319	0.006098
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	2	2	B.1.36.22	0.002415
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	2	2	B.1.36.8	0.002
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	2	2	B.1.366	0.009756
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	2	2	B.1.369	0.00057
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	2	2	B.1.40	0.039216
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	2	2	B.1.427	0.000101
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	2	2	B.1.468	0.011429
ORF1ab/nsp14A2-B	324	D324G	gAc	gGc	2	2	B.1.526	0.000047
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	2	2	B.1.565	0.001621
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	2	2	B.1.582	0.000981
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	2	2	B.1.595.3	0.052632
ORF1ab/nsp14A2-B	324	D324H	Gac	Cac	2	2	B.1.617.2	0.000008
ORF1ab/nsp14A2-B	324	D324del2	gAC	g--	2	2	B.1.617.2	0.000008
ORF1ab/nsp14A2-B	324	D324E	gaC	gaA	2	2	B.1.619	0.001742
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	2	2	B.1.619.1	0.001283
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	2	2	B.1.637	0.000146
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	2	2	B.40	0.000729
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	2	2	C.35	0.001548
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	2	2	C.36.3	0.001134
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	2	2	C.37	0.000232
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	2	2	P.1.12	0.000968
ORF1ab/nsp14A2-B	324	D324E	gaC	gaA	1	1	A.1	0.000282
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	1	1	A.2	0.000662
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	1	1	A.2	0.000662
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	1	1	A.2.5	0.000499
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	1	1	A.2.5.1	0.004808
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	1	1	A.2.5.2	0.001572
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	1	1	A.3	0.002096
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	1	1	A.5	0.001923
ORF1ab/nsp14A2-B	324	D324E	gaC	gaA	1	1	A.5	0.001923
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	1	1	AE.4	0.043478
ORF1ab/nsp14A2-B	324	D324I	GAC	ATT	1	1	All	0
ORF1ab/nsp14A2-B	324	D324T	GAc	ACc	1	1	All	0
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	1	1	AU.3	0.00211
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	1	1	AY.1	0.000396
ORF1ab/nsp14A2-B	324	D324N	Gac	Aac	1	1	AY.100	0.000046
ORF1ab/nsp14A2-B	324	D324E	gaC	gaA	1	1	AY.101	0.00049
ORF1ab/nsp14A2-B	324	D324G	gAc	gGc	1	1	AY.103	0.000006
ORF1ab/nsp14A2-B	324	D324E	gaC	gaA	1	1	AY.103	0.000006
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	1	1	AY.104	0.001984
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	1	1	AY.105	0.000643
ORF1ab/nsp14A2-B	324	D324N	Gac	Aac	1	1	AY.106	0.000335
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	1	1	AY.108	0.001103
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	1	1	AY.109	0.00074
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	1	1	AY.110	0.000113
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	1	1	AY.113	0.000142
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	1	1	AY.117	0.000085
ORF1ab/nsp14A2-B	324	D324E	gaC	gaA	1	1	AY.117	0.000085
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	1	1	AY.120.1	0.000321
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	1	1	AY.120.2.1	0.000498
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	1	1	AY.14	0.000088
ORF1ab/nsp14A2-B	324	D324N	Gac	Aac	1	1	AY.2	0.000356
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	1	1	AY.20	0.000039
ORF1ab/nsp14A2-B	324	D324del	GAC	---	1	1	AY.23	0.00007
ORF1ab/nsp14A2-B	324	D324N	Gac	Aac	1	1	AY.23	0.00007
ORF1ab/nsp14A2-B	324	D324G	gAc	gGc	1	1	AY.23	0.00007
ORF1ab/nsp14A2-B	324	D324N	Gac	Aac	1	1	AY.25	0.000006
ORF1ab/nsp14A2-B	324	D324G	gAc	gGc	1	1	AY.26	0.000028
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	1	1	AY.27	0.000065
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	1	1	AY.29.1	0.000221
ORF1ab/nsp14A2-B	324	D324N	Gac	Aac	1	1	AY.3	0.00001
ORF1ab/nsp14A2-B	324	D324N	Gac	Aac	1	1	AY.3.1	0.000085
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	1	1	AY.30	0.000396
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	1	1	AY.30	0.000396
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	1	1	AY.32	0.000532
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	1	1	AY.34	0.000097
ORF1ab/nsp14A2-B	324	D324del	GAC	---	1	1	AY.35	0.000233
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	1	1	AY.36	0.000148
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	1	1	AY.36	0.000148
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	1	1	AY.37	0.000316
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	1	1	AY.39.1	0.00004
ORF1ab/nsp14A2-B	324	D324del	GAC	---	1	1	AY.4	0.000002
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	1	1	AY.4.2.1	0.000149
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	1	1	AY.4.3	0.000842
ORF1ab/nsp14A2-B	324	D324N	Gac	Aac	1	1	AY.4.4	0.000409
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	1	1	AY.4.4	0.000409
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	1	1	AY.40	0.000964
ORF1ab/nsp14A2-B	324	D324N	Gac	Aac	1	1	AY.45	0.000122
ORF1ab/nsp14A2-B	324	D324E	gaC	gaA	1	1	AY.46	0.000104
ORF1ab/nsp14A2-B	324	D324N	Gac	Aac	1	1	AY.46.1	0.001027
ORF1ab/nsp14A2-B	324	D324E	gaC	gaA	1	1	AY.46.6	0.000072
ORF1ab/nsp14A2-B	324	D324G	gAc	gGc	1	1	AY.47	0.000031
ORF1ab/nsp14A2-B	324	D324E	gaC	gaA	1	1	AY.47	0.000031
ORF1ab/nsp14A2-B	324	D324N	Gac	Aac	1	1	AY.47	0.000031
ORF1ab/nsp14A2-B	324	D324N	Gac	Aac	1	1	AY.5	0.000021
ORF1ab/nsp14A2-B	324	D324E	gaC	gaA	1	1	AY.5.3	0.000337
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	1	1	AY.51	0.000909
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	1	1	AY.52	0.000814
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	1	1	AY.53	0.000288
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	1	1	AY.60	0.000938
ORF1ab/nsp14A2-B	324	D324N	Gac	Aac	1	1	AY.61	0.000105
ORF1ab/nsp14A2-B	324	D324G	gAc	gGc	1	1	AY.61	0.000105
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	1	1	AY.63	0.000387
ORF1ab/nsp14A2-B	324	D324E	gaC	gaA	1	1	AY.65	0.000533
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	1	1	AY.69	0.000187
ORF1ab/nsp14A2-B	324	D324N	Gac	Aac	1	1	AY.69	0.000187
ORF1ab/nsp14A2-B	324	D324E	gaC	gaA	1	1	AY.7.1	0.000113
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	1	1	AY.72	0.001361
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	1	1	AY.73	0.000665
ORF1ab/nsp14A2-B	324	D324E	gaC	gaA	1	1	AY.74	0.000116
ORF1ab/nsp14A2-B	324	D324E	gaC	gaA	1	1	AY.75	0.000056
ORF1ab/nsp14A2-B	324	D324del1	GaC	Aa-	1	1	AY.75.1	0.00018
ORF1ab/nsp14A2-B	324	D324E	gaC	gaA	1	1	AY.75.1	0.00018
ORF1ab/nsp14A2-B	324	D324del	GAC	---	1	1	AY.75.1	0.00018
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	1	1	AY.76	0.004831
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	1	1	AY.9	0.000068
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	1	1	AY.9.2.1	0.001976
ORF1ab/nsp14A2-B	324	D324E	gaC	gaA	1	1	AY.93	0.000273
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	1	1	AY.94	0.000443
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	1	1	AY.94	0.000443
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	1	1	AY.95	0.000761
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	1	1	AY.96	0.002075
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	1	1	AY.98	0.000079
ORF1ab/nsp14A2-B	324	D324N	Gac	Aac	1	1	AY.98	0.000079
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	1	1	AY.99	0.001049
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	1	1	AZ.2	0.000821
ORF1ab/nsp14A2-B	324	D324N	Gac	Aac	1	1	B	0.000128
ORF1ab/nsp14A2-B	324	D324H	Gac	Cac	1	1	B.1	0.000009
ORF1ab/nsp14A2-B	324	D324G	gAc	gGc	1	1	B.1	0.000009
ORF1ab/nsp14A2-B	324	D324A	gAc	gCc	1	1	B.1	0.000009
ORF1ab/nsp14A2-B	324	D324G	gAc	gGc	1	1	B.1.1	0.000018
ORF1ab/nsp14A2-B	324	D324N	Gac	Aac	1	1	B.1.1	0.000018
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	1	1	B.1.1.1	0.000327
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	1	1	B.1.1.10	0.001115
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	1	1	B.1.1.118	0.010204
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	1	1	B.1.1.121	0.002427
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	1	1	B.1.1.135	0.004695
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	1	1	B.1.1.148	0.008772
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	1	1	B.1.1.164	0.005155
ORF1ab/nsp14A2-B	324	D324E	gaC	gaA	1	1	B.1.1.189	0.001513
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	1	1	B.1.1.198	0.001468
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	1	1	B.1.1.205	0.003717
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	1	1	B.1.1.214	0.000055
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	1	1	B.1.1.220	0.001859
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	1	1	B.1.1.228	0.003049
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	1	1	B.1.1.232	0.001815
ORF1ab/nsp14A2-B	324	D324E	gaC	gaA	1	1	B.1.1.240	0.004695
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	1	1	B.1.1.241	0.00207
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	1	1	B.1.1.25	0.000569
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	1	1	B.1.1.25	0.000569
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	1	1	B.1.1.263	0.001558
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	1	1	B.1.1.273	0.006757
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	1	1	B.1.1.277	0.000759
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	1	1	B.1.1.284	0.000107
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	1	1	B.1.1.297	0.002237
ORF1ab/nsp14A2-B	324	D324del	GAC	---	1	1	B.1.1.306	0.000438
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	1	1	B.1.1.311	0.000358
ORF1ab/nsp14A2-B	324	D324del	GAC	---	1	1	B.1.1.311	0.000358
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	1	1	B.1.1.326	0.001761
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	1	1	B.1.1.33	0.000421
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	1	1	B.1.1.348	0.000796
ORF1ab/nsp14A2-B	324	D324G	gAc	gGc	1	1	B.1.1.37	0.000193
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	1	1	B.1.1.410	0.037037
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	1	1	B.1.1.422	0.045455
ORF1ab/nsp14A2-B	324	D324N	Gac	Aac	1	1	B.1.1.429	0.004608
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	1	1	B.1.1.432	0.001266
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	1	1	B.1.1.44	0.00241
ORF1ab/nsp14A2-B	324	D324E	gaC	gaA	1	1	B.1.1.44	0.00241
ORF1ab/nsp14A2-B	324	D324E	gaC	gaA	1	1	B.1.1.458	0.041667
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	1	1	B.1.1.47	0.005348
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	1	1	B.1.1.487	0.005587
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	1	1	B.1.1.487	0.005587
ORF1ab/nsp14A2-B	324	D324G	gAc	gGc	1	1	B.1.1.519	0.00004
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	1	1	B.1.1.521	0.005348
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	1	1	B.1.1.523	0.001563
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	1	1	B.1.1.525	0.005464
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	1	1	B.1.1.54	0.003021
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	1	1	B.1.1.56	0.017857
ORF1ab/nsp14A2-B	324	D324I	GAC	ATT	1	1	B.1.1.7	0.000001
ORF1ab/nsp14A2-B	324	D324N	Gac	Aac	1	1	B.1.1.70	0.000341
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	1	1	B.1.103	0.019231
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	1	1	B.1.111	0.001175
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	1	1	B.1.128	0.000635
ORF1ab/nsp14A2-B	324	D324E	gaC	gaA	1	1	B.1.139	0.000733
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	1	1	B.1.147	0.000756
ORF1ab/nsp14A2-B	324	D324E	gaC	gaA	1	1	B.1.160.26	0.002421
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	1	1	B.1.160.26	0.002421
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	1	1	B.1.160.32	0.004292
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	1	1	B.1.161	0.017241
ORF1ab/nsp14A2-B	324	D324G	gAc	gGc	1	1	B.1.177.15	0.000631
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	1	1	B.1.177.15	0.000631
ORF1ab/nsp14A2-B	324	D324E	gaC	gaA	1	1	B.1.177.21	0.000076
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	1	1	B.1.177.32	0.00135
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	1	1	B.1.177.35	0.000691
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	1	1	B.1.177.48	0.003125
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	1	1	B.1.177.56	0.000668
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	1	1	B.1.177.58	0.001332
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	1	1	B.1.177.60	0.000218
ORF1ab/nsp14A2-B	324	D324E	gaC	gaA	1	1	B.1.177.62	0.001192
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	1	1	B.1.177.65	0.000665
ORF1ab/nsp14A2-B	324	D324del	GAC	---	1	1	B.1.177.83	0.001481
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	1	1	B.1.177.86	0.000183
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	1	1	B.1.199	0.004132
ORF1ab/nsp14A2-B	324	D324del1	Gac	-ac	1	1	B.1.2	0.000009
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	1	1	B.1.203	0.0625
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	1	1	B.1.206	0.000816
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	1	1	B.1.210	0.002132
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	1	1	B.1.214.2	0.0006
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	1	1	B.1.22	0.001318
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	1	1	B.1.235	0.002519
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	1	1	B.1.240	0.000216
ORF1ab/nsp14A2-B	324	D324N	Gac	Aac	1	1	B.1.258	0.000067
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	1	1	B.1.258.14	0.00098
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	1	1	B.1.284	0.013158
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	1	1	B.1.305	0.002151
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	1	1	B.1.311	0.000275
ORF1ab/nsp14A2-B	324	D324E	gaC	gaA	1	1	B.1.319	0.003049
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	1	1	B.1.326	0.007576
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	1	1	B.1.340	0.004292
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	1	1	B.1.346	0.001311
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	1	1	B.1.349	0.000715
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	1	1	B.1.351.2	0.000303
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	1	1	B.1.36.1	0.00114
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	1	1	B.1.36.16	0.001425
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	1	1	B.1.36.17	0.000494
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	1	1	B.1.36.19	0.009259
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	1	1	B.1.36.26	0.002857
ORF1ab/nsp14A2-B	324	D324del1	Gac	-ac	1	1	B.1.36.29	0.000517
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	1	1	B.1.36.38	0.001642
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	1	1	B.1.360	0.012658
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	1	1	B.1.369	0.000285
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	1	1	B.1.377	0.004566
ORF1ab/nsp14A2-B	324	D324del1	gaC	ga-	1	1	B.1.381	0.007812
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	1	1	B.1.399	0.001934
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	1	1	B.1.404	0.001302
ORF1ab/nsp14A2-B	324	D324A	gAc	gCc	1	1	B.1.429	0.000024
ORF1ab/nsp14A2-B	324	D324N	Gac	Aac	1	1	B.1.429	0.000024
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	1	1	B.1.433	0.003195
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	1	1	B.1.438.1	0.000107
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	1	1	B.1.456	0.003268
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	1	1	B.1.459	0.004082
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	1	1	B.1.466.2	0.000391
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	1	1	B.1.499	0.00105
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	1	1	B.1.501	0.007353
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	1	1	B.1.504	0.03125
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	1	1	B.1.517.1	0.005263
ORF1ab/nsp14A2-B	324	D324G	gAc	gGc	1	1	B.1.524	0.001406
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	1	1	B.1.525	0.000113
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	1	1	B.1.525	0.000113
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	1	1	B.1.533	0.009615
ORF1ab/nsp14A2-B	324	D324del	GAC	---	1	1	B.1.561	0.000397
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	1	1	B.1.561	0.000397
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	1	1	B.1.564	0.000426
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	1	1	B.1.564.1	0.001577
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	1	1	B.1.565	0.00081
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	1	1	B.1.570	0.002941
ORF1ab/nsp14A2-B	324	D324E	gaC	gaA	1	1	B.1.575	0.000303
ORF1ab/nsp14A2-B	324	D324E	gaC	gaA	1	1	B.1.596	0.000087
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	1	1	B.1.600	0.005848
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	1	1	B.1.602	0.006536
ORF1ab/nsp14A2-B	324	D324N	Gac	Aac	1	1	B.1.612	0.002653
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	1	1	B.1.617.1	0.000129
ORF1ab/nsp14A2-B	324	D324T	GAc	ACc	1	1	B.1.617.2	0.000004
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	1	1	B.1.617.3	0.002985
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	1	1	B.1.619.1	0.000641
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	1	1	B.1.621	0.000089
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	1	1	B.1.621.1	0.000506
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	1	1	B.1.623	0.000536
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	1	1	B.1.627	0.00202
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	1	1	B.1.628	0.000352
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	1	1	B.1.81	0.021277
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	1	1	B.3	0.000831
ORF1ab/nsp14A2-B	324	D324G	gAc	gGc	1	1	B.39	0.002331
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	1	1	B.4	0.002208
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	1	1	B.4.5	0.011905
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	1	1	B.6	0.00091
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	1	1	C.1	0.002392
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	1	1	C.1.2	0.004255
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	1	1	C.14	0.004329
ORF1ab/nsp14A2-B	324	D324del	GAC	---	1	1	C.17	0.055556
ORF1ab/nsp14A2-B	324	D324E	gaC	gaA	1	1	C.36.3	0.000567
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	1	1	C.4	0.01
ORF1ab/nsp14A2-B	324	D324H	Gac	Cac	1	1	D.2	0.000075
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	1	1	N.5	0.001767
ORF1ab/nsp14A2-B	324	D324A	gAc	gCc	1	1	P.1	0.000016
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	1	1	P.1.1	0.000318
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	1	1	P.1.10	0.000269
ORF1ab/nsp14A2-B	324	D324G	gAc	gGc	1	1	P.1.11	0.010204
ORF1ab/nsp14A2-B	324	D324G	gAc	gGc	1	1	P.1.14	0.000048
ORF1ab/nsp14A2-B	324	D324del	GAC	---	1	1	P.1.15	0.000232
ORF1ab/nsp14A2-B	324	D324N	Gac	Aac	1	1	P.1.17	0.000162
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	1	1	P.1.17	0.000162
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	1	1	P.1.4	0.000977
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	1	1	P.1.7	0.000319
ORF1ab/nsp14A2-B	324	D324N	Gac	Aac	1	1	P.2	0.000187
ORF1ab/nsp14A2-B	324	D324D	gaC	gaT	1	1	P.2	0.000187
ORF1ab/nsp14A2-B	324	D324N	Gac	Aac	1	1	P.3	0.001595
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	1	1	Q.8	0.000165
ORF1ab/nsp14A2-B	324	D324Y	Gac	Tac	1	1	W.4	0.001351

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.