CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp14A2-B : CodonNum = 320

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp14A2-B320A320VA6245VnonsyngCagTa421842170.99976318997-18999
ORF1ab/nsp14A2-B320A320VA6245VnonsyngCAgTG421810.00023707918997-18999
ORF1ab/nsp14A2-B320A320AA6245AsyngcAgcC8115630.69420518997-18999
ORF1ab/nsp14A2-B320A320AA6245AsyngcAgcG8112070.2552418997-18999
ORF1ab/nsp14A2-B320A320AA6245AsyngcAgcT811410.050554918997-18999
ORF1ab/nsp14A2-B320A320TA6245TnonsynGcaAca4034020.99751918997-18999
ORF1ab/nsp14A2-B320A320TA6245TnonsynGcAAcC40310.0024813918997-18999
ORF1ab/nsp14A2-B320A320SA6245SnonsynGcaTca149149118997-18999
ORF1ab/nsp14A2-B320A320EA6245EnonsyngCagAa4242118997-18999
ORF1ab/nsp14A2-B320A320delA6245deldelGCA---3131118997-18999
ORF1ab/nsp14A2-B320A320del2A6245del2delGCa--a22118997-18999
ORF1ab/nsp14A2-B320A320LA6245LnonsynGCaCTa22118997-18999
ORF1ab/nsp14A2-B320A320GA6245GnonsyngCagGa210.518997-18999
ORF1ab/nsp14A2-B320A320GA6245GnonsyngCAgGG210.518997-18999
ORF1ab/nsp14A2-B320A320PA6245PnonsynGcaCca11118997-18999

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp14A2-B320A320VgCagTa42174218All0.000807
ORF1ab/nsp14A2-B320A320VgCAgTG14218All0
ORF1ab/nsp14A2-B320A320VgCagTa15031504B.10.013767
ORF1ab/nsp14A2-B320A320VgCAgTG11504B.10.000009
ORF1ab/nsp14A2-B320A320VgCagTa943943B.1.4990.990546
ORF1ab/nsp14A2-B320A320AgcAgcC563811All0.000108
ORF1ab/nsp14A2-B320A320AgcAgcG207811All0.00004
ORF1ab/nsp14A2-B320A320AgcAgcT41811All0.000008
ORF1ab/nsp14A2-B320A320AgcAgcC505514AY.250.003037
ORF1ab/nsp14A2-B320A320AgcAgcT8514AY.250.000048
ORF1ab/nsp14A2-B320A320AgcAgcG1514AY.250.000006
ORF1ab/nsp14A2-B320A320TGcaAca402403All0.000077
ORF1ab/nsp14A2-B320A320TGcAAcC1403All0
ORF1ab/nsp14A2-B320A320VgCagTa394394B.1.5030.9801
ORF1ab/nsp14A2-B320A320VgCagTa290290B.1.1.70.00026
ORF1ab/nsp14A2-B320A320VgCagTa225225B.1.5050.986842
ORF1ab/nsp14A2-B320A320TGcaAca192192AY.40.000299
ORF1ab/nsp14A2-B320A320VgCagTa153153Q.80.025231
ORF1ab/nsp14A2-B320A320SGcaTca149149All0.000028
ORF1ab/nsp14A2-B320A320VgCagTa132132B.1.5010.970588
ORF1ab/nsp14A2-B320A320VgCagTa8787B.1.5070.977528
ORF1ab/nsp14A2-B320A320AgcAgcG6162AY.440.000371
ORF1ab/nsp14A2-B320A320AgcAgcC162AY.440.000006
ORF1ab/nsp14A2-B320A320VgCagTa4949B.1.4981
ORF1ab/nsp14A2-B320A320TGcaAca4545AY.1030.000279
ORF1ab/nsp14A2-B320A320SGcaTca4343AY.4.20.000933
ORF1ab/nsp14A2-B320A320EgCagAa4242All0.000008
ORF1ab/nsp14A2-B320A320VgCagTa3939B.1.5081
ORF1ab/nsp14A2-B320A320AgcAgcG3738AY.30.000368
ORF1ab/nsp14A2-B320A320AgcAgcC138AY.30.00001
ORF1ab/nsp14A2-B320A320VgCagTa3737B.1.5060.880952
ORF1ab/nsp14A2-B320A320EgCagAa3636B.1.1.70.000032
ORF1ab/nsp14A2-B320A320VgCagTa3434AY.1030.000211
ORF1ab/nsp14A2-B320A320delGCA---3131All0.000006
ORF1ab/nsp14A2-B320A320VgCagTa3030AY.200.001166
ORF1ab/nsp14A2-B320A320AgcAgcG1630B.1.617.20.00006
ORF1ab/nsp14A2-B320A320AgcAgcC830B.1.617.20.00003
ORF1ab/nsp14A2-B320A320AgcAgcT630B.1.617.20.000023
ORF1ab/nsp14A2-B320A320VgCagTa2929B.1.5040.90625
ORF1ab/nsp14A2-B320A320TGcaAca2828AY.30.000278
ORF1ab/nsp14A2-B320A320AgcAgcG1725B.1.1.70.000015
ORF1ab/nsp14A2-B320A320AgcAgcT625B.1.1.70.000005
ORF1ab/nsp14A2-B320A320AgcAgcC225B.1.1.70.000002
ORF1ab/nsp14A2-B320A320VgCagTa2525B.1.6151
ORF1ab/nsp14A2-B320A320VgCagTa2424B.1.6110.96
ORF1ab/nsp14A2-B320A320TGcaAca2323AY.4.50.002472
ORF1ab/nsp14A2-B320A320AgcAgcG2020AY.1030.000124
ORF1ab/nsp14A2-B320A320SGcaTca1919AY.30.000189
ORF1ab/nsp14A2-B320A320AgcAgcG1319AY.430.000058
ORF1ab/nsp14A2-B320A320AgcAgcC619AY.430.000027
ORF1ab/nsp14A2-B320A320TGcaAca1919B.1.36.330.143939
ORF1ab/nsp14A2-B320A320VgCagTa1919B.1.5021
ORF1ab/nsp14A2-B320A320AgcAgcC1717AY.390.00042
ORF1ab/nsp14A2-B320A320TGcaAca1516B.1.1.70.000013
ORF1ab/nsp14A2-B320A320TGcAAcC116B.1.1.70.000001
ORF1ab/nsp14A2-B320A320SGcaTca1414AY.40.000022
ORF1ab/nsp14A2-B320A320VgCagTa1414B.1.5000.736842
ORF1ab/nsp14A2-B320A320SGcaTca1414P.10.000221
ORF1ab/nsp14A2-B320A320VgCagTa1313AY.1180.000814
ORF1ab/nsp14A2-B320A320VgCagTa1313B.1.177.600.00284
ORF1ab/nsp14A2-B320A320TGcaAca1212AY.370.003793
ORF1ab/nsp14A2-B320A320AgcAgcC612AY.40.000009
ORF1ab/nsp14A2-B320A320AgcAgcG612AY.40.000009
ORF1ab/nsp14A2-B320A320VgCagTa1212B.1.1770.000158
ORF1ab/nsp14A2-B320A320SGcaTca1212B.1.617.20.000045
ORF1ab/nsp14A2-B320A320VgCagTa1212B.1.617.20.000045
ORF1ab/nsp14A2-B320A320delGCA---1111B.1.1.70.00001
ORF1ab/nsp14A2-B320A320VgCagTa1010AY.40.000016
ORF1ab/nsp14A2-B320A320TGcaAca1010AY.50.000206
ORF1ab/nsp14A2-B320A320VgCagTa99B.1.499.11
ORF1ab/nsp14A2-B320A320VgCagTa88B.1.1600.00025
ORF1ab/nsp14A2-B320A320AgcAgcC77AY.46.60.000505
ORF1ab/nsp14A2-B320A320VgCagTa77B.1.10.000127
ORF1ab/nsp14A2-B320A320VgCagTa66AY.230.000418
ORF1ab/nsp14A2-B320A320AgcAgcT56AY.610.000524
ORF1ab/nsp14A2-B320A320AgcAgcC16AY.610.000105
ORF1ab/nsp14A2-B320A320SGcaTca66B.1.1.70.000005
ORF1ab/nsp14A2-B320A320TGcaAca66B.1.20.000053
ORF1ab/nsp14A2-B320A320AgcAgcT45AY.200.000155
ORF1ab/nsp14A2-B320A320AgcAgcC15AY.200.000039
ORF1ab/nsp14A2-B320A320SGcaTca55AY.430.000022
ORF1ab/nsp14A2-B320A320VgCagTa55B.1.1.2840.000537
ORF1ab/nsp14A2-B320A320TGcaAca55B.1.1.3480.003981
ORF1ab/nsp14A2-B320A320VgCagTa55B.1.2580.000333
ORF1ab/nsp14A2-B320A320VgCagTa55B.1.3620.007704
ORF1ab/nsp14A2-B320A320AgcAgcC24AY.1190.000071
ORF1ab/nsp14A2-B320A320AgcAgcG24AY.1190.000071
ORF1ab/nsp14A2-B320A320VgCagTa44AY.250.000024
ORF1ab/nsp14A2-B320A320TGcaAca44AY.420.000161
ORF1ab/nsp14A2-B320A320VgCagTa44AY.440.000024
ORF1ab/nsp14A2-B320A320SGcaTca44B.1.10.000073
ORF1ab/nsp14A2-B320A320SGcaTca44B.1.1.5190.000159
ORF1ab/nsp14A2-B320A320AgcAgcG44B.1.177.750.004162
ORF1ab/nsp14A2-B320A320AgcAgcT34B.1.20.000026
ORF1ab/nsp14A2-B320A320AgcAgcG14B.1.20.000009
ORF1ab/nsp14A2-B320A320AgcAgcG44B.1.2580.000266
ORF1ab/nsp14A2-B320A320VgCagTa44B.1.5820.001963
ORF1ab/nsp14A2-B320A320TGcaAca44B.1.617.20.000015
ORF1ab/nsp14A2-B320A320SGcaTca33AY.1020.00008
ORF1ab/nsp14A2-B320A320SGcaTca33AY.1030.000019
ORF1ab/nsp14A2-B320A320VgCagTa33AY.30.00003
ORF1ab/nsp14A2-B320A320TGcaAca33AY.4.30.002525
ORF1ab/nsp14A2-B320A320TGcaAca33AY.440.000018
ORF1ab/nsp14A2-B320A320TGcaAca33AY.470.000093
ORF1ab/nsp14A2-B320A320AgcAgcT13B.10.000009
ORF1ab/nsp14A2-B320A320AgcAgcG13B.10.000009
ORF1ab/nsp14A2-B320A320AgcAgcC13B.10.000009
ORF1ab/nsp14A2-B320A320TGcaAca33B.1.1770.00004
ORF1ab/nsp14A2-B320A320AgcAgcG33B.1.1770.00004
ORF1ab/nsp14A2-B320A320delGCA---33B.1.1770.00004
ORF1ab/nsp14A2-B320A320VgCagTa33B.1.20.000026
ORF1ab/nsp14A2-B320A320VgCagTa33B.1.2350.007557
ORF1ab/nsp14A2-B320A320EgCagAa33B.1.258.170.000312
ORF1ab/nsp14A2-B320A320VgCagTa33B.1.3670.002377
ORF1ab/nsp14A2-B320A320VgCagTa33B.1.3980.008929
ORF1ab/nsp14A2-B320A320VgCagTa33B.1.5090.002597
ORF1ab/nsp14A2-B320A320VgCagTa220.111111
ORF1ab/nsp14A2-B320A320del2GCa--a22All0
ORF1ab/nsp14A2-B320A320LGCaCTa22All0
ORF1ab/nsp14A2-B320A320GgCagGa12All0
ORF1ab/nsp14A2-B320A320GgCAgGG12All0
ORF1ab/nsp14A2-B320A320VgCagTa22AY.1020.000053
ORF1ab/nsp14A2-B320A320AgcAgcG12AY.1020.000027
ORF1ab/nsp14A2-B320A320AgcAgcT12AY.1020.000027
ORF1ab/nsp14A2-B320A320AgcAgcG22AY.260.000057
ORF1ab/nsp14A2-B320A320AgcAgcG22AY.330.000134
ORF1ab/nsp14A2-B320A320VgCagTa22AY.350.000466
ORF1ab/nsp14A2-B320A320delGCA---22AY.350.000466
ORF1ab/nsp14A2-B320A320delGCA---22AY.40.000003
ORF1ab/nsp14A2-B320A320AgcAgcG22AY.4.20.000043
ORF1ab/nsp14A2-B320A320GgCAgGG12AY.4.50.000107
ORF1ab/nsp14A2-B320A320GgCagGa12AY.4.50.000107
ORF1ab/nsp14A2-B320A320TGcaAca22AY.430.000009
ORF1ab/nsp14A2-B320A320VgCagTa22AY.430.000009
ORF1ab/nsp14A2-B320A320TGcaAca22AY.450.000243
ORF1ab/nsp14A2-B320A320SGcaTca22AY.610.00021
ORF1ab/nsp14A2-B320A320TGcaAca22AY.750.000112
ORF1ab/nsp14A2-B320A320SGcaTca22B.10.000018
ORF1ab/nsp14A2-B320A320VgCagTa22B.1.1.2220.000408
ORF1ab/nsp14A2-B320A320TGcaAca22B.1.1.2860.005797
ORF1ab/nsp14A2-B320A320AgcAgcT22B.1.1.3890.012121
ORF1ab/nsp14A2-B320A320VgCagTa22B.1.1.5260.007092
ORF1ab/nsp14A2-B320A320VgCagTa22B.1.1570.00597
ORF1ab/nsp14A2-B320A320VgCagTa22B.1.2370.00995
ORF1ab/nsp14A2-B320A320VgCagTa22B.1.3020.026667
ORF1ab/nsp14A2-B320A320VgCagTa22B.1.3910.002255
ORF1ab/nsp14A2-B320A320VgCagTa22B.1.4930.051282
ORF1ab/nsp14A2-B320A320VgCagTa22B.1.5950.000522
ORF1ab/nsp14A2-B320A320VgCagTa22B.1.5960.000174
ORF1ab/nsp14A2-B320A320TGcaAca22B.1.6210.000177
ORF1ab/nsp14A2-B320A320AgcAgcG22B.1.6340.006849
ORF1ab/nsp14A2-B320A320VgCagTa22P.10.000032
ORF1ab/nsp14A2-B320A320delGCA---22P.1.150.000465
ORF1ab/nsp14A2-B320A320AgcAgcG22P.20.000373
ORF1ab/nsp14A2-B320A320PGcaCca11All0
ORF1ab/nsp14A2-B320A320AgcAgcT11AY.1130.000142
ORF1ab/nsp14A2-B320A320AgcAgcT11AY.1160.000287
ORF1ab/nsp14A2-B320A320AgcAgcC11AY.1170.000085
ORF1ab/nsp14A2-B320A320TGcaAca11AY.1170.000085
ORF1ab/nsp14A2-B320A320AgcAgcG11AY.230.00007
ORF1ab/nsp14A2-B320A320delGCA---11AY.230.00007
ORF1ab/nsp14A2-B320A320TGcaAca11AY.250.000006
ORF1ab/nsp14A2-B320A320TGcaAca11AY.260.000028
ORF1ab/nsp14A2-B320A320TGcaAca11AY.270.000065
ORF1ab/nsp14A2-B320A320SGcaTca11AY.330.000067
ORF1ab/nsp14A2-B320A320VgCagTa11AY.390.000025
ORF1ab/nsp14A2-B320A320SGcaTca11AY.390.000025
ORF1ab/nsp14A2-B320A320AgcAgcG11AY.4.50.000107
ORF1ab/nsp14A2-B320A320AgcAgcG11AY.420.00004
ORF1ab/nsp14A2-B320A320SGcaTca11AY.440.000006
ORF1ab/nsp14A2-B320A320AgcAgcT11AY.450.000122
ORF1ab/nsp14A2-B320A320SGcaTca11AY.470.000031
ORF1ab/nsp14A2-B320A320AgcAgcC11AY.470.000031
ORF1ab/nsp14A2-B320A320VgCagTa11AY.50.000021
ORF1ab/nsp14A2-B320A320SGcaTca11AY.50.000021
ORF1ab/nsp14A2-B320A320AgcAgcG11AY.50.000021
ORF1ab/nsp14A2-B320A320AgcAgcG11AY.540.000095
ORF1ab/nsp14A2-B320A320TGcaAca11AY.540.000095
ORF1ab/nsp14A2-B320A320SGcaTca11AY.550.000917
ORF1ab/nsp14A2-B320A320AgcAgcT11AY.550.000917
ORF1ab/nsp14A2-B320A320TGcaAca11AY.610.000105
ORF1ab/nsp14A2-B320A320VgCagTa11AY.680.000274
ORF1ab/nsp14A2-B320A320AgcAgcG11AY.740.000116
ORF1ab/nsp14A2-B320A320AgcAgcG11AY.750.000056
ORF1ab/nsp14A2-B320A320VgCagTa11AY.750.000056
ORF1ab/nsp14A2-B320A320delGCA---11AY.75.10.00018
ORF1ab/nsp14A2-B320A320del2GCa--a11AY.810.001992
ORF1ab/nsp14A2-B320A320TGcaAca11AY.840.000437
ORF1ab/nsp14A2-B320A320SGcaTca11AY.90.000068
ORF1ab/nsp14A2-B320A320SGcaTca11AY.9.10.000084
ORF1ab/nsp14A2-B320A320TGcaAca11AY.920.000287
ORF1ab/nsp14A2-B320A320AgcAgcC11AY.920.000287
ORF1ab/nsp14A2-B320A320VgCagTa11AY.930.000273
ORF1ab/nsp14A2-B320A320VgCagTa11AY.98.10.000048
ORF1ab/nsp14A2-B320A320AgcAgcC11AY.98.10.000048
ORF1ab/nsp14A2-B320A320delGCA---11AY.99.10.001553
ORF1ab/nsp14A2-B320A320PGcaCca11B.10.000009
ORF1ab/nsp14A2-B320A320delGCA---11B.10.000009
ORF1ab/nsp14A2-B320A320TGcaAca11B.10.000009
ORF1ab/nsp14A2-B320A320LGCaCTa11B.10.000009
ORF1ab/nsp14A2-B320A320EgCagAa11B.1.10.000018
ORF1ab/nsp14A2-B320A320SGcaTca11B.1.1.1740.003378
ORF1ab/nsp14A2-B320A320SGcaTca11B.1.1.2140.000055
ORF1ab/nsp14A2-B320A320SGcaTca11B.1.1.280.000311
ORF1ab/nsp14A2-B320A320delGCA---11B.1.1.3060.000438
ORF1ab/nsp14A2-B320A320delGCA---11B.1.1.3110.000358
ORF1ab/nsp14A2-B320A320VgCagTa11B.1.1.330.000421
ORF1ab/nsp14A2-B320A320VgCagTa11B.1.1.3350.012987
ORF1ab/nsp14A2-B320A320VgCagTa11B.1.1.4200.001006
ORF1ab/nsp14A2-B320A320delGCA---11B.1.1.430.014925
ORF1ab/nsp14A2-B320A320VgCagTa11B.1.1.4330.001425
ORF1ab/nsp14A2-B320A320VgCagTa11B.1.1.500.000679
ORF1ab/nsp14A2-B320A320del2GCa--a11B.1.1.70.000001
ORF1ab/nsp14A2-B320A320LGCaCTa11B.1.1.70.000001
ORF1ab/nsp14A2-B320A320TGcaAca11B.1.110.30.000718
ORF1ab/nsp14A2-B320A320VgCagTa11B.1.1150.021739
ORF1ab/nsp14A2-B320A320VgCagTa11B.1.1400.018868
ORF1ab/nsp14A2-B320A320TGcaAca11B.1.1600.000031
ORF1ab/nsp14A2-B320A320EgCagAa11B.1.1600.000031
ORF1ab/nsp14A2-B320A320VgCagTa11B.1.1670.007812
ORF1ab/nsp14A2-B320A320SGcaTca11B.1.177.510.004566
ORF1ab/nsp14A2-B320A320delGCA---11B.1.177.600.000218
ORF1ab/nsp14A2-B320A320delGCA---11B.1.177.830.001481
ORF1ab/nsp14A2-B320A320TGcaAca11B.1.1950.005025
ORF1ab/nsp14A2-B320A320SGcaTca11B.1.20.000009
ORF1ab/nsp14A2-B320A320EgCagAa11B.1.20.000009
ORF1ab/nsp14A2-B320A320TGcaAca11B.1.2390.001221
ORF1ab/nsp14A2-B320A320VgCagTa11B.1.3160.111111
ORF1ab/nsp14A2-B320A320TGcaAca11B.1.3510.00003
ORF1ab/nsp14A2-B320A320AgcAgcG11B.1.3510.00003
ORF1ab/nsp14A2-B320A320VgCagTa11B.1.3540.043478
ORF1ab/nsp14A2-B320A320SGcaTca11B.1.36.290.000517
ORF1ab/nsp14A2-B320A320SGcaTca11B.1.4160.001269
ORF1ab/nsp14A2-B320A320VgCagTa11B.1.4270.00005
ORF1ab/nsp14A2-B320A320VgCagTa11B.1.4280.00102
ORF1ab/nsp14A2-B320A320VgCagTa11B.1.4290.000024
ORF1ab/nsp14A2-B320A320VgCagTa11B.1.4530.003236
ORF1ab/nsp14A2-B320A320VgCagTa11B.1.5250.000113
ORF1ab/nsp14A2-B320A320AgcAgcG11B.1.5250.000113
ORF1ab/nsp14A2-B320A320VgCagTa11B.1.5260.000024
ORF1ab/nsp14A2-B320A320AgcAgcT11B.1.5260.000024
ORF1ab/nsp14A2-B320A320TGcaAca11B.1.5300.007143
ORF1ab/nsp14A2-B320A320delGCA---11B.1.5610.000397
ORF1ab/nsp14A2-B320A320AgcAgcG11B.1.5950.000261
ORF1ab/nsp14A2-B320A320VgCagTa11B.1.6010.030303
ORF1ab/nsp14A2-B320A320SGcaTca11B.1.617.10.000129
ORF1ab/nsp14A2-B320A320VgCagTa11B.1.6210.000089
ORF1ab/nsp14A2-B320A320VgCagTa11B.1.6250.002353
ORF1ab/nsp14A2-B320A320VgCagTa11B.1.9.50.005682
ORF1ab/nsp14A2-B320A320AgcAgcC11B.400.000364
ORF1ab/nsp14A2-B320A320delGCA---11C.170.055556
ORF1ab/nsp14A2-B320A320VgCagTa11P.1.100.000269
ORF1ab/nsp14A2-B320A320SGcaTca11P.1.120.000484
ORF1ab/nsp14A2-B320A320TGcaAca11P.1.150.000232
ORF1ab/nsp14A2-B320A320SGcaTca11P.1.170.000162
ORF1ab/nsp14A2-B320A320TGcaAca11P.20.000187