CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp14A2-B : CodonNum = 274

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF1ab/nsp14A2-B	274	A274S	A6199S	nonsyn	Gca	Tca	4898	4898	1	18859-18861
ORF1ab/nsp14A2-B	274	A274A	A6199A	syn	gcA	gcG	432	308	0.712963	18859-18861
ORF1ab/nsp14A2-B	274	A274A	A6199A	syn	gcA	gcT	432	87	0.201389	18859-18861
ORF1ab/nsp14A2-B	274	A274A	A6199A	syn	gcA	gcC	432	37	0.0856481	18859-18861
ORF1ab/nsp14A2-B	274	A274del	A6199del	del	GCA	---	52	52	1	18859-18861
ORF1ab/nsp14A2-B	274	A274V	A6199V	nonsyn	gCa	gTa	32	28	0.875	18859-18861
ORF1ab/nsp14A2-B	274	A274V	A6199V	nonsyn	gCA	gTT	32	3	0.09375	18859-18861
ORF1ab/nsp14A2-B	274	A274V	A6199V	nonsyn	gCA	gTG	32	1	0.03125	18859-18861
ORF1ab/nsp14A2-B	274	A274del1	A6199del1	del	gcA	gc-	10	9	0.9	18859-18861
ORF1ab/nsp14A2-B	274	A274del1	A6199del1	del	Gca	-ca	10	1	0.1	18859-18861
ORF1ab/nsp14A2-B	274	A274E	A6199E	nonsyn	gCa	gAa	7	7	1	18859-18861
ORF1ab/nsp14A2-B	274	A274T	A6199T	nonsyn	Gca	Aca	6	6	1	18859-18861
ORF1ab/nsp14A2-B	274	A274P	A6199P	nonsyn	Gca	Cca	4	4	1	18859-18861
ORF1ab/nsp14A2-B	274	A274R	A6199R	nonsyn	GCA	CGG	4	2	0.5	18859-18861
ORF1ab/nsp14A2-B	274	A274L	A6199L	nonsyn	GCA	TTG	4	2	0.5	18859-18861
ORF1ab/nsp14A2-B	274	A274R	A6199R	nonsyn	GCA	AGG	4	2	0.5	18859-18861
ORF1ab/nsp14A2-B	274	A274L	A6199L	nonsyn	GCA	CTG	4	2	0.5	18859-18861
ORF1ab/nsp14A2-B	274	A274C	A6199C	nonsyn	GCA	TGC	3	3	1	18859-18861
ORF1ab/nsp14A2-B	274	A274K	A6199K	nonsyn	GCA	AAG	2	2	1	18859-18861
ORF1ab/nsp14A2-B	274	A274W	A6199W	nonsyn	GCA	TGG	2	2	1	18859-18861
ORF1ab/nsp14A2-B	274	A274X	A6199X	nonsyn	GCA	TAG	2	2	1	18859-18861
ORF1ab/nsp14A2-B	274	A274M	A6199M	nonsyn	GCA	ATG	2	2	1	18859-18861
ORF1ab/nsp14A2-B	274	A274Q	A6199Q	nonsyn	GCA	CAG	2	2	1	18859-18861
ORF1ab/nsp14A2-B	274	A274del2	A6199del2	del	GCa	--a	2	2	1	18859-18861
ORF1ab/nsp14A2-B	274	A274G	A6199G	nonsyn	gCa	gGa	1	1	1	18859-18861
ORF1ab/nsp14A2-B	274	A274I	A6199I	nonsyn	GCa	ATa	1	1	1	18859-18861

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	4898	4898	All	0.000937
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	891	891	B.1.1.279	0.998879
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	761	761	AY.120	0.028293
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	573	573	AY.4	0.000892
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	451	451	B.1.1.7	0.000404
ORF1ab/nsp14A2-B	274	A274A	gcA	gcG	308	432	All	0.000059
ORF1ab/nsp14A2-B	274	A274A	gcA	gcT	87	432	All	0.000017
ORF1ab/nsp14A2-B	274	A274A	gcA	gcC	37	432	All	0.000007
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	239	239	B.1.427	0.012069
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	189	189	B.1.1	0.003429
ORF1ab/nsp14A2-B	274	A274A	gcA	gcG	145	145	B.1.177	0.001909
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	136	136	AY.44	0.000828
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	136	136	B.1.617.2	0.000512
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	106	106	AY.103	0.000658
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	99	99	B.1.177	0.001304
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	83	83	B.1	0.00076
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	82	82	AY.98.1	0.003971
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	64	64	AY.54	0.006102
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	64	64	B.1.619.1	0.041052
ORF1ab/nsp14A2-B	274	A274A	gcA	gcG	59	59	AY.4.2	0.00128
ORF1ab/nsp14A2-B	274	A274A	gcA	gcG	35	58	B.1.1.7	0.000031
ORF1ab/nsp14A2-B	274	A274A	gcA	gcT	23	58	B.1.1.7	0.000021
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	54	54	B.1.177.75	0.056191
ORF1ab/nsp14A2-B	274	A274del	GCA	---	52	52	All	0.00001
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	50	50	B.1.1.25	0.028425
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	44	44	B.1.429	0.001035
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	39	39	AY.9.2	0.001432
ORF1ab/nsp14A2-B	274	A274A	gcA	gcG	24	37	AY.44	0.000146
ORF1ab/nsp14A2-B	274	A274A	gcA	gcT	13	37	AY.44	0.000079
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	36	36	P.1	0.000567
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	35	35	AY.43	0.000155
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	35	35	B.1.361	0.045103
ORF1ab/nsp14A2-B	274	A274V	gCa	gTa	28	32	All	0.000005
ORF1ab/nsp14A2-B	274	A274V	gCA	gTT	3	32	All	0.000001
ORF1ab/nsp14A2-B	274	A274V	gCA	gTG	1	32	All	0
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	32	32	B.1.2	0.000282
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	29	29	AY.3	0.000288
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	28	28	AY.69	0.005227
ORF1ab/nsp14A2-B	274	A274del	GCA	---	28	28	B.1.1.7	0.000025
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	27	27	AF.1	1
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	26	26	AY.25	0.000156
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	24	24	B.1.561	0.009528
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	22	22	AY.117	0.001859
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	20	20	D.2	0.001501
ORF1ab/nsp14A2-B	274	A274A	gcA	gcT	8	18	AY.4	0.000012
ORF1ab/nsp14A2-B	274	A274A	gcA	gcG	6	18	AY.4	0.000009
ORF1ab/nsp14A2-B	274	A274A	gcA	gcC	4	18	AY.4	0.000006
ORF1ab/nsp14A2-B	274	A274A	gcA	gcC	18	18	B.1.429	0.000424
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	16	16	B.1.1.369	0.00714
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	16	16	B.1.36.22	0.019324
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	13	13	AY.100	0.000598
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	13	13	AY.26	0.000368
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	13	13	AY.4.2	0.000282
ORF1ab/nsp14A2-B	274	A274A	gcA	gcG	5	13	B.1.617.2	0.000019
ORF1ab/nsp14A2-B	274	A274A	gcA	gcC	5	13	B.1.617.2	0.000019
ORF1ab/nsp14A2-B	274	A274A	gcA	gcT	3	13	B.1.617.2	0.000011
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	12	12	AY.46	0.001249
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	12	12	AY.98	0.000948
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	12	12	B.1.1.519	0.000477
ORF1ab/nsp14A2-B	274	A274del1	gcA	gc-	9	10	All	0.000002
ORF1ab/nsp14A2-B	274	A274del1	Gca	-ca	1	10	All	0
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	10	10	AY.20	0.000389
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	10	10	AY.39.1	0.000396
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	10	10	B.1.577	0.006873
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	10	10	B.1.621.1	0.005058
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	10	10	P.2	0.001866
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	9	9	AY.23	0.000628
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	9	9	B.1.160	0.000281
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	9	9	P.1.10	0.002425
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	8	8	AY.16	0.003037
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	8	8	AY.39	0.000198
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	8	8	B.1.177.4	0.001688
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	8	8	B.1.596	0.000697
ORF1ab/nsp14A2-B	274	A274A	gcA	gcG	8	8	B.1.621	0.000708
ORF1ab/nsp14A2-B	274	A274E	gCa	gAa	7	7	All	0.000001
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	7	7	AY.33	0.000467
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	7	7	AY.45	0.000852
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	7	7	AY.46.6	0.000505
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	7	7	AY.9	0.000473
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	7	7	AY.9.1	0.000586
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	7	7	B.1.311	0.001922
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	7	7	B.1.575	0.002124
ORF1ab/nsp14A2-B	274	A274T	Gca	Aca	6	6	All	0.000001
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	6	6	AY.102	0.000159
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	6	6	AY.121	0.000812
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	6	6	B.1.1.526	0.021277
ORF1ab/nsp14A2-B	274	A274V	gCa	gTa	6	6	B.1.1.7	0.000005
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	6	6	B.1.221	0.000426
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	6	6	B.1.36	0.000875
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	6	6	B.1.526	0.000141
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	5	5	AY.29	0.000079
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	5	5	AY.42	0.000201
ORF1ab/nsp14A2-B	274	A274A	gcA	gcG	3	5	AY.43	0.000013
ORF1ab/nsp14A2-B	274	A274A	gcA	gcT	2	5	AY.43	0.000009
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	5	5	AY.5	0.000103
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	5	5	AY.88	0.004421
ORF1ab/nsp14A2-B	274	A274A	gcA	gcG	4	5	B.1	0.000037
ORF1ab/nsp14A2-B	274	A274A	gcA	gcT	1	5	B.1	0.000009
ORF1ab/nsp14A2-B	274	A274A	gcA	gcT	5	5	B.1.1	0.000091
ORF1ab/nsp14A2-B	274	A274A	gcA	gcT	3	5	B.1.2	0.000026
ORF1ab/nsp14A2-B	274	A274A	gcA	gcG	1	5	B.1.2	0.000009
ORF1ab/nsp14A2-B	274	A274A	gcA	gcC	1	5	B.1.2	0.000009
ORF1ab/nsp14A2-B	274	A274A	gcA	gcG	3	5	B.1.221	0.000213
ORF1ab/nsp14A2-B	274	A274A	gcA	gcT	2	5	B.1.221	0.000142
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	5	5	B.1.243	0.000348
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	5	5	B.1.36.29	0.002587
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	5	5	B.1.466.2	0.001956
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	5	5	C.30	0.008636
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	5	5	Q.2	0.003067
ORF1ab/nsp14A2-B	274	A274L	GCA	CTG	2	4		0.111111
ORF1ab/nsp14A2-B	274	A274R	GCA	AGG	2	4		0.111111
ORF1ab/nsp14A2-B	274	A274R	GCA	CGG	2	4		0.111111
ORF1ab/nsp14A2-B	274	A274L	GCA	TTG	2	4		0.111111
ORF1ab/nsp14A2-B	274	A274P	Gca	Cca	4	4	All	0.000001
ORF1ab/nsp14A2-B	274	A274L	GCA	CTG	2	4	All	0
ORF1ab/nsp14A2-B	274	A274L	GCA	TTG	2	4	All	0
ORF1ab/nsp14A2-B	274	A274R	GCA	CGG	2	4	All	0
ORF1ab/nsp14A2-B	274	A274R	GCA	AGG	2	4	All	0
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	4	4	AY.120.2	0.005141
ORF1ab/nsp14A2-B	274	A274A	gcA	gcT	4	4	AY.42	0.000161
ORF1ab/nsp14A2-B	274	A274del	GCA	---	4	4	AY.43	0.000018
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	4	4	AY.47	0.000124
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	4	4	AY.75	0.000224
ORF1ab/nsp14A2-B	274	A274V	gCa	gTa	4	4	B.1	0.000037
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	4	4	B.1.1.28	0.001245
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	4	4	B.1.258	0.000266
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	4	4	B.1.609	0.001918
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	4	4	B.1.621	0.000354
ORF1ab/nsp14A2-B	274	A274A	gcA	gcT	4	4	B.1.628	0.001409
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	4	4	B.1.628	0.001409
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	4	4	C.37	0.000464
ORF1ab/nsp14A2-B	274	A274A	gcA	gcC	4	4	P.1.9	0.019231
ORF1ab/nsp14A2-B	274	A274C	GCA	TGC	3	3	All	0.000001
ORF1ab/nsp14A2-B	274	A274A	gcA	gcT	3	3	AY.113	0.000427
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	3	3	AY.3.1	0.000256
ORF1ab/nsp14A2-B	274	A274del	GCA	---	3	3	AY.4	0.000005
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	3	3	AY.5.3	0.001012
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	3	3	AY.6	0.000123
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	3	3	AY.99.2	0.000276
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	3	3	B	0.000383
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	3	3	B.1.177.44	0.001557
ORF1ab/nsp14A2-B	274	A274del1	gcA	gc-	3	3	B.1.2	0.000026
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	3	3	B.1.351	0.000089
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	3	3	B.1.36.18	0.001261
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	3	3	B.1.371	0.003367
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	3	3	B.1.409	0.002344
ORF1ab/nsp14A2-B	274	A274Q	GCA	CAG	2	2		0.111111
ORF1ab/nsp14A2-B	274	A274X	GCA	TAG	2	2		0.111111
ORF1ab/nsp14A2-B	274	A274V	gCA	gTT	2	2		0.111111
ORF1ab/nsp14A2-B	274	A274M	GCA	ATG	2	2		0.111111
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	2	2		0.111111
ORF1ab/nsp14A2-B	274	A274W	GCA	TGG	2	2		0.111111
ORF1ab/nsp14A2-B	274	A274K	GCA	AAG	2	2		0.111111
ORF1ab/nsp14A2-B	274	A274M	GCA	ATG	2	2	All	0
ORF1ab/nsp14A2-B	274	A274K	GCA	AAG	2	2	All	0
ORF1ab/nsp14A2-B	274	A274del2	GCa	--a	2	2	All	0
ORF1ab/nsp14A2-B	274	A274Q	GCA	CAG	2	2	All	0
ORF1ab/nsp14A2-B	274	A274X	GCA	TAG	2	2	All	0
ORF1ab/nsp14A2-B	274	A274W	GCA	TGG	2	2	All	0
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	2	2	AY.1	0.000791
ORF1ab/nsp14A2-B	274	A274A	gcA	gcG	2	2	AY.102	0.000053
ORF1ab/nsp14A2-B	274	A274A	gcA	gcT	1	2	AY.103	0.000006
ORF1ab/nsp14A2-B	274	A274A	gcA	gcG	1	2	AY.103	0.000006
ORF1ab/nsp14A2-B	274	A274A	gcA	gcC	2	2	AY.16	0.000759
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	2	2	AY.16.1	0.00094
ORF1ab/nsp14A2-B	274	A274A	gcA	gcG	2	2	AY.29	0.000032
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	2	2	AY.30	0.000791
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	2	2	AY.36	0.000296
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	2	2	AY.38	0.000999
ORF1ab/nsp14A2-B	274	A274del	GCA	---	2	2	AY.4.5	0.000215
ORF1ab/nsp14A2-B	274	A274V	gCa	gTa	2	2	AY.44	0.000012
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	2	2	AY.7.1	0.000225
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	2	2	AY.75.1	0.000361
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	2	2	AY.84	0.000875
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	2	2	AZ.2	0.001642
ORF1ab/nsp14A2-B	274	A274E	gCa	gAa	2	2	B.1	0.000018
ORF1ab/nsp14A2-B	274	A274V	gCA	gTT	1	2	B.1.1	0.000018
ORF1ab/nsp14A2-B	274	A274V	gCa	gTa	1	2	B.1.1	0.000018
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	2	2	B.1.1.10	0.00223
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	2	2	B.1.1.153	0.002191
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	2	2	B.1.1.170	0.002494
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	2	2	B.1.1.207	0.002364
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	2	2	B.1.1.222	0.000408
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	2	2	B.1.1.317	0.000823
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	2	2	B.1.1.448	0.004065
ORF1ab/nsp14A2-B	274	A274T	Gca	Aca	2	2	B.1.1.7	0.000002
ORF1ab/nsp14A2-B	274	A274del	GCA	---	2	2	B.1.177	0.000026
ORF1ab/nsp14A2-B	274	A274del1	gcA	gc-	2	2	B.1.177	0.000026
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	2	2	B.1.177.3	0.015267
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	2	2	B.1.177.33	0.003289
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	2	2	B.1.177.74	0.030303
ORF1ab/nsp14A2-B	274	A274V	gCa	gTa	2	2	B.1.2	0.000018
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	2	2	B.1.258.17	0.000208
ORF1ab/nsp14A2-B	274	A274A	gcA	gcG	2	2	B.1.498	0.040816
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	2	2	B.1.574	0.004301
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	2	2	B.1.582	0.000981
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	2	2	B.1.597	0.009259
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	2	2	B.1.617.1	0.000258
ORF1ab/nsp14A2-B	274	A274del1	gcA	gc-	2	2	B.1.617.2	0.000008
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	2	2	P.1.14	0.000096
ORF1ab/nsp14A2-B	274	A274A	gcA	gcT	2	2	P.1.7	0.000639
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	2	2	Q.7	0.002222
ORF1ab/nsp14A2-B	274	A274I	GCa	ATa	1	1	A	0.000387
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	1	1	A.2.5	0.000499
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	1	1	A.27	0.001656
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	1	1	AE.8	0.000489
ORF1ab/nsp14A2-B	274	A274I	GCa	ATa	1	1	All	0
ORF1ab/nsp14A2-B	274	A274G	gCa	gGa	1	1	All	0
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	1	1	AU.2	0.002421
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	1	1	AY.101	0.00049
ORF1ab/nsp14A2-B	274	A274P	Gca	Cca	1	1	AY.103	0.000006
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	1	1	AY.104	0.001984
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	1	1	AY.106	0.000335
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	1	1	AY.113	0.000142
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	1	1	AY.119	0.000035
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	1	1	AY.12	0.000316
ORF1ab/nsp14A2-B	274	A274A	gcA	gcC	1	1	AY.121	0.000135
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	1	1	AY.14	0.000088
ORF1ab/nsp14A2-B	274	A274del	GCA	---	1	1	AY.19	0.00114
ORF1ab/nsp14A2-B	274	A274V	gCa	gTa	1	1	AY.20	0.000039
ORF1ab/nsp14A2-B	274	A274A	gcA	gcT	1	1	AY.21	0.001898
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	1	1	AY.23.1	0.000417
ORF1ab/nsp14A2-B	274	A274A	gcA	gcT	1	1	AY.25	0.000006
ORF1ab/nsp14A2-B	274	A274del	GCA	---	1	1	AY.25	0.000006
ORF1ab/nsp14A2-B	274	A274A	gcA	gcG	1	1	AY.26	0.000028
ORF1ab/nsp14A2-B	274	A274A	gcA	gcT	1	1	AY.27	0.000065
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	1	1	AY.27	0.000065
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	1	1	AY.29.1	0.000221
ORF1ab/nsp14A2-B	274	A274T	Gca	Aca	1	1	AY.3	0.00001
ORF1ab/nsp14A2-B	274	A274A	gcA	gcG	1	1	AY.3	0.00001
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	1	1	AY.34	0.000097
ORF1ab/nsp14A2-B	274	A274A	gcA	gcT	1	1	AY.34	0.000097
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	1	1	AY.35	0.000233
ORF1ab/nsp14A2-B	274	A274A	gcA	gcG	1	1	AY.39	0.000025
ORF1ab/nsp14A2-B	274	A274del2	GCa	--a	1	1	AY.4	0.000002
ORF1ab/nsp14A2-B	274	A274V	gCa	gTa	1	1	AY.4	0.000002
ORF1ab/nsp14A2-B	274	A274E	gCa	gAa	1	1	AY.4.2	0.000022
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	1	1	AY.4.2.1	0.000149
ORF1ab/nsp14A2-B	274	A274V	gCA	gTG	1	1	AY.4.5	0.000107
ORF1ab/nsp14A2-B	274	A274A	gcA	gcT	1	1	AY.41	0.000294
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	1	1	AY.41	0.000294
ORF1ab/nsp14A2-B	274	A274del	GCA	---	1	1	AY.42	0.00004
ORF1ab/nsp14A2-B	274	A274P	Gca	Cca	1	1	AY.43	0.000004
ORF1ab/nsp14A2-B	274	A274V	gCa	gTa	1	1	AY.43	0.000004
ORF1ab/nsp14A2-B	274	A274del1	Gca	-ca	1	1	AY.44	0.000006
ORF1ab/nsp14A2-B	274	A274T	Gca	Aca	1	1	AY.44	0.000006
ORF1ab/nsp14A2-B	274	A274P	Gca	Cca	1	1	AY.44	0.000006
ORF1ab/nsp14A2-B	274	A274A	gcA	gcC	1	1	AY.46	0.000104
ORF1ab/nsp14A2-B	274	A274del	GCA	---	1	1	AY.46.2	0.000635
ORF1ab/nsp14A2-B	274	A274A	gcA	gcT	1	1	AY.46.4	0.000165
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	1	1	AY.5.1	0.003759
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	1	1	AY.5.4	0.000277
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	1	1	AY.52	0.000814
ORF1ab/nsp14A2-B	274	A274A	gcA	gcT	1	1	AY.6	0.000041
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	1	1	AY.61	0.000105
ORF1ab/nsp14A2-B	274	A274A	gcA	gcT	1	1	AY.69	0.000187
ORF1ab/nsp14A2-B	274	A274C	GCA	TGC	1	1	AY.75	0.000056
ORF1ab/nsp14A2-B	274	A274A	gcA	gcG	1	1	AY.75	0.000056
ORF1ab/nsp14A2-B	274	A274del	GCA	---	1	1	AY.81	0.001992
ORF1ab/nsp14A2-B	274	A274del	GCA	---	1	1	AY.9	0.000068
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	1	1	AY.95	0.000761
ORF1ab/nsp14A2-B	274	A274G	gCa	gGa	1	1	B	0.000128
ORF1ab/nsp14A2-B	274	A274T	Gca	Aca	1	1	B.1	0.000009
ORF1ab/nsp14A2-B	274	A274del	GCA	---	1	1	B.1.1	0.000018
ORF1ab/nsp14A2-B	274	A274P	Gca	Cca	1	1	B.1.1	0.000018
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	1	1	B.1.1.161	0.003534
ORF1ab/nsp14A2-B	274	A274E	gCa	gAa	1	1	B.1.1.25	0.000569
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	1	1	B.1.1.291	0.000742
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	1	1	B.1.1.294	0.001266
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	1	1	B.1.1.334	0.016393
ORF1ab/nsp14A2-B	274	A274V	gCa	gTa	1	1	B.1.1.37	0.000193
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	1	1	B.1.1.464	0.001473
ORF1ab/nsp14A2-B	274	A274A	gcA	gcG	1	1	B.1.1.464	0.001473
ORF1ab/nsp14A2-B	274	A274A	gcA	gcT	1	1	B.1.1.519	0.00004
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	1	1	B.1.1.523	0.001563
ORF1ab/nsp14A2-B	274	A274E	gCa	gAa	1	1	B.1.1.7	0.000001
ORF1ab/nsp14A2-B	274	A274del1	gcA	gc-	1	1	B.1.1.7	0.000001
ORF1ab/nsp14A2-B	274	A274del2	GCa	--a	1	1	B.1.1.7	0.000001
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	1	1	B.1.108	0.005814
ORF1ab/nsp14A2-B	274	A274V	gCa	gTa	1	1	B.1.110	0.004525
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	1	1	B.1.113	0.015625
ORF1ab/nsp14A2-B	274	A274E	gCa	gAa	1	1	B.1.157	0.002985
ORF1ab/nsp14A2-B	274	A274A	gcA	gcC	1	1	B.1.157	0.002985
ORF1ab/nsp14A2-B	274	A274V	gCa	gTa	1	1	B.1.160.12	0.00641
ORF1ab/nsp14A2-B	274	A274C	GCA	TGC	1	1	B.1.177	0.000013
ORF1ab/nsp14A2-B	274	A274V	gCa	gTa	1	1	B.1.177	0.000013
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	1	1	B.1.177.12	0.000152
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	1	1	B.1.177.17	0.000821
ORF1ab/nsp14A2-B	274	A274del	GCA	---	1	1	B.1.177.18	0.00116
ORF1ab/nsp14A2-B	274	A274A	gcA	gcG	1	1	B.1.177.19	0.001431
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	1	1	B.1.177.21	0.000076
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	1	1	B.1.177.32	0.00135
ORF1ab/nsp14A2-B	274	A274del	GCA	---	1	1	B.1.177.4	0.000211
ORF1ab/nsp14A2-B	274	A274T	Gca	Aca	1	1	B.1.177.43	0.001477
ORF1ab/nsp14A2-B	274	A274A	gcA	gcT	1	1	B.1.177.52	0.001757
ORF1ab/nsp14A2-B	274	A274V	gCa	gTa	1	1	B.1.177.56	0.000668
ORF1ab/nsp14A2-B	274	A274del	GCA	---	1	1	B.1.177.69	0.001484
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	1	1	B.1.177.83	0.001481
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	1	1	B.1.177.87	0.000728
ORF1ab/nsp14A2-B	274	A274E	gCa	gAa	1	1	B.1.2	0.000009
ORF1ab/nsp14A2-B	274	A274V	gCa	gTa	1	1	B.1.221	0.000071
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	1	1	B.1.240	0.000216
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	1	1	B.1.241	0.000812
ORF1ab/nsp14A2-B	274	A274A	gcA	gcG	1	1	B.1.258.3	0.001675
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	1	1	B.1.281	0.021739
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	1	1	B.1.318	0.038462
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	1	1	B.1.351.2	0.000303
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	1	1	B.1.387	0.04
ORF1ab/nsp14A2-B	274	A274V	gCa	gTa	1	1	B.1.396	0.000706
ORF1ab/nsp14A2-B	274	A274del	GCA	---	1	1	B.1.409	0.000781
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	1	1	B.1.416.1	0.001563
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	1	1	B.1.426	0.001009
ORF1ab/nsp14A2-B	274	A274del	GCA	---	1	1	B.1.459	0.004082
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	1	1	B.1.467	0.04
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	1	1	B.1.470	0.001404
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	1	1	B.1.525	0.000113
ORF1ab/nsp14A2-B	274	A274A	gcA	gcG	1	1	B.1.526	0.000024
ORF1ab/nsp14A2-B	274	A274A	gcA	gcT	1	1	B.1.551	0.00129
ORF1ab/nsp14A2-B	274	A274del1	gcA	gc-	1	1	B.1.596	0.000087
ORF1ab/nsp14A2-B	274	A274V	gCa	gTa	1	1	B.1.596	0.000087
ORF1ab/nsp14A2-B	274	A274del	GCA	---	1	1	B.1.617.2	0.000004
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	1	1	B.1.620	0.000946
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	1	1	B.1.637	0.000073
ORF1ab/nsp14A2-B	274	A274A	gcA	gcT	1	1	B.1.93	0.000934
ORF1ab/nsp14A2-B	274	A274V	gCa	gTa	1	1	B.12	0.00641
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	1	1	B.28	0.003279
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	1	1	B.3.1	0.001658
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	1	1	B.40	0.000364
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	1	1	C.16	0.00106
ORF1ab/nsp14A2-B	274	A274C	GCA	TGC	1	1	C.17	0.055556
ORF1ab/nsp14A2-B	274	A274V	gCa	gTa	1	1	D.2	0.000075
ORF1ab/nsp14A2-B	274	A274A	gcA	gcT	1	1	P.1.14	0.000048
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	1	1	P.1.17	0.000162
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	1	1	P.7	0.004367
ORF1ab/nsp14A2-B	274	A274S	Gca	Tca	1	1	Q.1	0.000126

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.