CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp14A2-B | 255 | S255S | S6180S | syn | agC | agT | 5381 | 5380 | 0.999814 | 18802-18804 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 5380 | 5381 | All | 0.001029 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 2439 | 2439 | AY.25 | 0.01467 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 519 | 519 | AY.44 | 0.003159 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 412 | 412 | AY.26 | 0.011664 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 401 | 402 | B.1.1.7 | 0.000359 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 175 | 175 | AY.103 | 0.001087 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 174 | 174 | B.1.617.2 | 0.000655 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 170 | 170 | P.1 | 0.002678 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 157 | 157 | B.1.2 | 0.001382 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 114 | 114 | AY.4 | 0.000177 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 75 | 75 | B.1.177.43 | 0.110783 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 72 | 72 | B.1.637 | 0.005261 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 57 | 57 | AY.75 | 0.003193 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 45 | 45 | AY.43 | 0.000199 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 45 | 45 | R.1 | 0.00405 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 30 | 30 | AD.2 | 0.006569 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 26 | 26 | B.1.177 | 0.000342 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 24 | 24 | B.1 | 0.00022 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 21 | 21 | AY.3 | 0.000209 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 20 | 20 | AY.4.2 | 0.000434 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 19 | 19 | AY.102 | 0.000504 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 16 | 16 | B.1.221 | 0.001137 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 14 | 14 | B.1.1.214 | 0.000776 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 14 | 14 | B.1.298 | 0.029598 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 13 | 13 | B.1.1 | 0.000236 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 11 | 11 | B.1.311 | 0.00302 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 11 | 11 | B.1.623 | 0.005901 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 10 | 10 | B.1.351 | 0.000297 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 9 | 9 | AY.119 | 0.000318 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 9 | 9 | AY.39 | 0.000222 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 9 | 9 | AY.9.2 | 0.000331 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 9 | 9 | B.1.596 | 0.000784 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 7 | 7 | AY.100 | 0.000322 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 7 | 7 | AY.29 | 0.00011 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 7 | 7 | B.1.429 | 0.000165 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 6 | 6 | AY.113 | 0.000854 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 6 | 6 | AY.6 | 0.000247 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 6 | 6 | AY.61 | 0.000629 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 6 | 6 | AY.94 | 0.002656 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 6 | 6 | B.1.526 | 0.000141 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 6 | 6 | B.1.582 | 0.002944 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 6 | 6 | B.1.588 | 0.00546 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 5 | 5 | AY.3.1 | 0.000426 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 5 | 5 | AY.47 | 0.000156 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 5 | 5 | AY.98.1 | 0.000242 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 5 | 5 | B.1.36 | 0.00073 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 5 | 5 | B.1.36.16 | 0.007123 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 5 | 5 | B.1.416.1 | 0.007812 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 5 | 5 | Q.1 | 0.000632 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 4 | 4 | AY.74 | 0.000463 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 4 | 4 | AY.98 | 0.000316 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 4 | 4 | B.1.234 | 0.000528 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 4 | 4 | B.1.595 | 0.001044 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 4 | 4 | C.37 | 0.000464 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 3 | 3 | AY.114 | 0.000693 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 3 | 3 | AY.120 | 0.000112 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 3 | 3 | AY.20 | 0.000117 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 3 | 3 | AY.23 | 0.000209 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 3 | 3 | AY.33 | 0.0002 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 3 | 3 | AY.4.5 | 0.000322 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 3 | 3 | AY.92 | 0.000862 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 3 | 3 | B.1.1.222 | 0.000612 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 3 | 3 | B.1.1.306 | 0.001315 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 3 | 3 | B.1.258.17 | 0.000312 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 3 | 3 | B.1.36.29 | 0.001552 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 3 | 3 | B.1.389 | 0.003006 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 3 | 3 | B.1.617.1 | 0.000387 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 2 | 2 | AY.10 | 0.00106 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 2 | 2 | AY.118 | 0.000125 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 2 | 2 | AY.121 | 0.000271 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 2 | 2 | AY.46 | 0.000208 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 2 | 2 | AY.63 | 0.000774 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 2 | 2 | AY.69 | 0.000373 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 2 | 2 | AY.85 | 0.000854 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 2 | 2 | B | 0.000256 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 2 | 2 | B.1.1.1 | 0.000653 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 2 | 2 | B.1.1.148 | 0.017544 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 2 | 2 | B.1.1.302 | 0.004149 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 2 | 2 | B.1.160.10 | 0.016129 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 2 | 2 | B.1.177.4 | 0.000422 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 2 | 2 | B.1.232 | 0.001075 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 2 | 2 | B.1.243 | 0.000139 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 2 | 2 | B.1.351.3 | 0.001753 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 2 | 2 | B.1.466.2 | 0.000782 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 2 | 2 | B.1.497 | 0.00063 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 2 | 2 | B.1.577 | 0.001375 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 1 | 1 | AH.3 | 0.003802 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 1 | 1 | AY.8 | 0.000606 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 1 | 1 | AY.82 | 0.001357 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 1 | 1 | B.1.1.220 | 0.001859 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 1 | 1 | B.1.1.389 | 0.006061 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 1 | 1 | B.1.139 | 0.000733 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 1 | 1 | B.1.160.20 | 0.008929 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 1 | 1 | B.1.177.10 | 0.000878 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 1 | 1 | B.1.205 | 0.02381 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 1 | 1 | B.1.214 | 0.003663 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 1 | 1 | B.1.214.2 | 0.0006 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 1 | 1 | B.1.499 | 0.00105 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 1 | 1 | B.1.509 | 0.000866 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 1 | 1 | B.1.524 | 0.001406 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 1 | 1 | B.1.596.1 | 0.009346 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 1 | 1 | B.1.627 | 0.00202 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 1 | 1 | B.23 | 0.002924 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 1 | 1 | B.3 | 0.000831 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 1 | 1 | C.14 | 0.004329 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 1 | 1 | C.36.3 | 0.000567 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 1 | 1 | P.3 | 0.001595 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 1 | 1 | Q.3 | 0.000145 |
ORF1ab/nsp14A2-B | 255 | S255S | agC | agT | 1 | 1 | Q.8 | 0.000165 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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