CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp14A2-B : CodonNum = 250

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF1ab/nsp14A2-B	250	T250I	T6175I	nonsyn	aCa	aTa	8471	8471	1	18787-18789
ORF1ab/nsp14A2-B	250	T250T	T6175T	syn	acA	acG	293	252	0.860068	18787-18789
ORF1ab/nsp14A2-B	250	T250T	T6175T	syn	acA	acT	293	28	0.0955631	18787-18789
ORF1ab/nsp14A2-B	250	T250T	T6175T	syn	acA	acC	293	13	0.0443686	18787-18789
ORF1ab/nsp14A2-B	250	T250K	T6175K	nonsyn	aCa	aAa	173	172	0.99422	18787-18789
ORF1ab/nsp14A2-B	250	T250K	T6175K	nonsyn	aCA	aAG	173	1	0.00578035	18787-18789
ORF1ab/nsp14A2-B	250	T250A	T6175A	nonsyn	Aca	Gca	141	141	1	18787-18789
ORF1ab/nsp14A2-B	250	T250del	T6175del	del	ACA	---	56	56	1	18787-18789
ORF1ab/nsp14A2-B	250	T250S	T6175S	nonsyn	Aca	Tca	9	8	0.888889	18787-18789
ORF1ab/nsp14A2-B	250	T250S	T6175S	nonsyn	AcA	TcC	9	1	0.111111	18787-18789
ORF1ab/nsp14A2-B	250	T250del2	T6175del2	del	ACa	--a	7	3	0.428571	18787-18789
ORF1ab/nsp14A2-B	250	T250del2	T6175del2	del	ACA	--G	7	2	0.285714	18787-18789
ORF1ab/nsp14A2-B	250	T250del2	T6175del2	del	aCA	a--	7	2	0.285714	18787-18789
ORF1ab/nsp14A2-B	250	T250P	T6175P	nonsyn	Aca	Cca	4	4	1	18787-18789
ORF1ab/nsp14A2-B	250	T250del1	T6175del1	del	Aca	-ca	4	1	0.25	18787-18789
ORF1ab/nsp14A2-B	250	T250del1	T6175del1	del	acA	ac-	4	1	0.25	18787-18789
ORF1ab/nsp14A2-B	250	T250del1	T6175del1	del	AcA	Gc-	4	1	0.25	18787-18789
ORF1ab/nsp14A2-B	250	T250del1	T6175del1	del	ACa	-Na	4	1	0.25	18787-18789
ORF1ab/nsp14A2-B	250	T250N	T6175N	nonsyn	aCA	aAT	2	2	1	18787-18789
ORF1ab/nsp14A2-B	250	T250R	T6175R	nonsyn	aCa	aGa	1	1	1	18787-18789
ORF1ab/nsp14A2-B	250	T250L	T6175L	nonsyn	ACa	CTa	1	1	1	18787-18789
ORF1ab/nsp14A2-B	250	T250F	T6175F	nonsyn	ACA	TTT	1	1	1	18787-18789

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	8471	8471	All	0.00162
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	2043	2043	B.1.1.7	0.001829
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	1582	1582	AY.14	0.139236
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	344	344	P.1	0.005419
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	333	333	B.1.1.4	0.991071
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	302	302	B.1.617.2	0.001137
ORF1ab/nsp14A2-B	250	T250T	acA	acG	252	293	All	0.000048
ORF1ab/nsp14A2-B	250	T250T	acA	acT	28	293	All	0.000005
ORF1ab/nsp14A2-B	250	T250T	acA	acC	13	293	All	0.000002
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	262	262	B.1.2	0.002307
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	255	255	B.1.1	0.004626
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	246	246	B.1.221	0.017474
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	235	235	AY.4	0.000366
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	193	193	AY.43	0.000855
ORF1ab/nsp14A2-B	250	T250K	aCa	aAa	172	173	All	0.000033
ORF1ab/nsp14A2-B	250	T250K	aCA	aAG	1	173	All	0
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	156	156	B.1	0.001429
ORF1ab/nsp14A2-B	250	T250K	aCa	aAa	153	153	AY.33	0.010217
ORF1ab/nsp14A2-B	250	T250A	Aca	Gca	141	141	All	0.000027
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	140	140	AY.44	0.000852
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	124	124	AU.3	0.261603
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	124	124	AY.98.1	0.006005
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	121	121	B.1.235	0.304786
ORF1ab/nsp14A2-B	250	T250T	acA	acG	99	107	B.1.1.7	0.000089
ORF1ab/nsp14A2-B	250	T250T	acA	acT	6	107	B.1.1.7	0.000005
ORF1ab/nsp14A2-B	250	T250T	acA	acC	2	107	B.1.1.7	0.000002
ORF1ab/nsp14A2-B	250	T250T	acA	acG	102	103	P.1	0.001607
ORF1ab/nsp14A2-B	250	T250T	acA	acC	1	103	P.1	0.000016
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	94	94	AY.25	0.000565
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	78	78	B.1.1.265	0.246057
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	77	77	Q.1	0.009727
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	72	72	B.1.160	0.002246
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	69	69	AY.3	0.000686
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	67	67	B.1.429	0.001576
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	57	57	B.1.526	0.00134
ORF1ab/nsp14A2-B	250	T250del	ACA	---	56	56	All	0.000011
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	56	56	B.1.427	0.002828
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	54	54	AY.103	0.000335
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	52	52	B.1.351	0.001546
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	39	39	AY.74	0.00451
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	38	38	AY.29	0.000599
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	38	38	P.1.14	0.001816
ORF1ab/nsp14A2-B	250	T250A	Aca	Gca	36	36	B.1.1.7	0.000032
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	35	35	AY.54	0.003337
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	33	33	B.1.177	0.000435
ORF1ab/nsp14A2-B	250	T250A	Aca	Gca	33	33	B.1.221	0.002344
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	31	31	AY.9.2	0.001139
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	30	30	AY.47	0.000933
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	30	30	P.1.13	0.026954
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	28	28	AY.100	0.001288
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	25	25	AY.39.1	0.00099
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	24	24	AY.26	0.000679
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	24	24	Q.3	0.003481
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	23	23	AY.102	0.00061
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	22	22	B.1.575.1	0.053659
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	20	20	B.1.234	0.002639
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	20	20	B.1.369	0.005705
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	19	19	B.1.340	0.081545
ORF1ab/nsp14A2-B	250	T250del	ACA	---	17	17	B.1.1.7	0.000015
ORF1ab/nsp14A2-B	250	T250A	Aca	Gca	17	17	B.1.177.60	0.003713
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	17	17	B.1.243	0.001183
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	17	17	B.1.8	0.033531
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	16	16	AY.39	0.000395
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	16	16	B.1.258	0.001065
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	15	15	AY.42	0.000603
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	15	15	B.1.1.456	0.833333
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	15	15	P.1.4	0.014648
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	14	14	AY.4.2	0.000304
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	13	13	AY.19	0.014823
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	13	13	AY.33	0.000868
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	13	13	B.1.623	0.006974
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	13	13	C.37	0.001509
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	12	12	AY.118	0.000752
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	12	12	AY.46.4	0.001974
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	12	12	P.2	0.00224
ORF1ab/nsp14A2-B	250	T250T	acA	acT	11	11	AY.111	0.002015
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	11	11	AY.38	0.005492
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	11	11	B.1.177.12	0.001669
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	10	10	AY.61	0.001048
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	10	10	AY.75	0.00056
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	10	10	AY.99.2	0.000922
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	10	10	B.1.36.29	0.005173
ORF1ab/nsp14A2-B	250	T250S	Aca	Tca	8	9	All	0.000002
ORF1ab/nsp14A2-B	250	T250S	AcA	TcC	1	9	All	0
ORF1ab/nsp14A2-B	250	T250T	acA	acG	8	9	AY.43	0.000035
ORF1ab/nsp14A2-B	250	T250T	acA	acC	1	9	AY.43	0.000004
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	9	9	AY.85	0.003845
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	9	9	B.1.1.46	0.039301
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	9	9	B.1.577	0.006186
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	9	9	B.1.621	0.000797
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	9	9	P.1.12	0.004356
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	8	8	AY.13	0.001288
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	8	8	AY.20	0.000311
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	8	8	AY.27	0.000518
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	8	8	AY.83	0.013793
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	8	8	AY.9	0.000541
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	8	8	AY.9.1	0.00067
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	8	8	AY.98	0.000632
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	8	8	B.1.1.28	0.00249
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	8	8	B.1.1.519	0.000318
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	8	8	B.1.177.81	0.001515
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	8	8	B.1.499	0.008403
ORF1ab/nsp14A2-B	250	T250del2	ACa	--a	3	7	All	0.000001
ORF1ab/nsp14A2-B	250	T250del2	ACA	--G	2	7	All	0
ORF1ab/nsp14A2-B	250	T250del2	aCA	a--	2	7	All	0
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	7	7	AY.5	0.000145
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	7	7	AY.51	0.006364
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	7	7	B.1.1.176	0.003076
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	7	7	B.1.22	0.009223
ORF1ab/nsp14A2-B	250	T250A	Aca	Gca	7	7	B.1.617.2	0.000026
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	6	6	AY.3.1	0.000512
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	6	6	AY.36	0.000889
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	6	6	AY.49	0.019169
ORF1ab/nsp14A2-B	250	T250T	acA	acG	6	6	AY.5	0.000124
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	6	6	AY.62	0.002614
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	6	6	AY.65	0.003198
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	6	6	B.1.1.170	0.007481
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	6	6	B.1.1.214	0.000333
ORF1ab/nsp14A2-B	250	T250A	Aca	Gca	6	6	B.1.177	0.000079
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	6	6	B.1.36	0.000875
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	6	6	B.1.617.1	0.000774
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	6	6	B.4	0.013245
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	6	6	P.1.15	0.001394
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	6	6	R.1	0.00054
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	5	5	AY.119	0.000177
ORF1ab/nsp14A2-B	250	T250T	acA	acG	5	5	AY.25	0.00003
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	5	5	AY.30	0.001979
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	5	5	AY.34	0.000485
ORF1ab/nsp14A2-B	250	T250T	acA	acT	3	5	AY.4	0.000005
ORF1ab/nsp14A2-B	250	T250T	acA	acG	2	5	AY.4	0.000003
ORF1ab/nsp14A2-B	250	T250del	ACA	---	5	5	AY.43	0.000022
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	5	5	AY.46.6	0.000361
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	5	5	AY.72	0.006803
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	5	5	B.1.1.222	0.00102
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	5	5	B.1.177.57	0.001405
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	5	5	B.1.177.73	0.002831
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	5	5	B.1.258.3	0.008375
ORF1ab/nsp14A2-B	250	T250T	acA	acG	3	5	B.1.617.2	0.000011
ORF1ab/nsp14A2-B	250	T250T	acA	acC	1	5	B.1.617.2	0.000004
ORF1ab/nsp14A2-B	250	T250T	acA	acT	1	5	B.1.617.2	0.000004
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	5	5	B.1.637	0.000365
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	5	5	Q.8	0.000825
ORF1ab/nsp14A2-B	250	T250del2	ACA	--G	2	4		0.111111
ORF1ab/nsp14A2-B	250	T250del2	ACa	--a	2	4		0.111111
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	4	4	A	0.001548
ORF1ab/nsp14A2-B	250	T250P	Aca	Cca	4	4	All	0.000001
ORF1ab/nsp14A2-B	250	T250del1	Aca	-ca	1	4	All	0
ORF1ab/nsp14A2-B	250	T250del1	acA	ac-	1	4	All	0
ORF1ab/nsp14A2-B	250	T250del1	ACa	-Na	1	4	All	0
ORF1ab/nsp14A2-B	250	T250del1	AcA	Gc-	1	4	All	0
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	4	4	AY.10	0.00212
ORF1ab/nsp14A2-B	250	T250T	acA	acC	2	4	AY.102	0.000053
ORF1ab/nsp14A2-B	250	T250T	acA	acG	2	4	AY.102	0.000053
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	4	4	AY.106	0.00134
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	4	4	AY.120	0.000149
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	4	4	AY.23	0.000279
ORF1ab/nsp14A2-B	250	T250A	Aca	Gca	4	4	AY.4	0.000006
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	4	4	AY.4.4	0.001637
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	4	4	AY.4.5	0.00043
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	4	4	AY.53	0.00115
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	4	4	AY.63	0.001547
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	4	4	AY.75.1	0.000721
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	4	4	B	0.000511
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	4	4	B.1.1.216	0.003562
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	4	4	B.1.1.318	0.001207
ORF1ab/nsp14A2-B	250	T250A	Aca	Gca	4	4	B.1.177.82	0.001909
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	4	4	B.1.240	0.000862
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	4	4	B.1.311	0.001098
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	4	4	B.1.470	0.005618
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	4	4	B.1.509	0.003463
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	4	4	B.1.596	0.000349
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	4	4	P.1.7	0.001277
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	3	3	AD.2	0.000657
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	3	3	AY.121	0.000406
ORF1ab/nsp14A2-B	250	T250A	Aca	Gca	3	3	AY.25	0.000018
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	3	3	AY.4.2.1	0.000447
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	3	3	AY.46	0.000312
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	3	3	AY.5.3	0.001012
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	3	3	AY.71	0.001425
ORF1ab/nsp14A2-B	250	T250A	Aca	Gca	3	3	B.1	0.000027
ORF1ab/nsp14A2-B	250	T250K	aCa	aAa	3	3	B.1	0.000027
ORF1ab/nsp14A2-B	250	T250T	acA	acG	2	3	B.1	0.000018
ORF1ab/nsp14A2-B	250	T250T	acA	acT	1	3	B.1	0.000009
ORF1ab/nsp14A2-B	250	T250T	acA	acG	3	3	B.1.1	0.000054
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	3	3	B.1.1.135	0.014085
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	3	3	B.1.1.37	0.000579
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	3	3	B.1.1.83	0.00813
ORF1ab/nsp14A2-B	250	T250del	ACA	---	3	3	B.1.177	0.00004
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	3	3	B.1.177.4	0.000633
ORF1ab/nsp14A2-B	250	T250T	acA	acC	3	3	B.1.177.4	0.000633
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	3	3	B.1.177.53	0.007177
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	3	3	B.1.258.23	0.071429
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	3	3	B.1.346	0.003932
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	3	3	B.1.400	0.001287
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	3	3	B.1.471	0.008197
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	3	3	B.1.638	0.157895
ORF1ab/nsp14A2-B	250	T250del	ACA	---	2	2		0.111111
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	2	2	A.1	0.000564
ORF1ab/nsp14A2-B	250	T250N	aCA	aAT	2	2	All	0
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	2	2	AY.1	0.000791
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	2	2	AY.114	0.000462
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	2	2	AY.117	0.000169
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	2	2	AY.16	0.000759
ORF1ab/nsp14A2-B	250	T250A	Aca	Gca	2	2	AY.29	0.000032
ORF1ab/nsp14A2-B	250	T250A	Aca	Gca	2	2	AY.3	0.00002
ORF1ab/nsp14A2-B	250	T250T	acA	acG	2	2	AY.3	0.00002
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	2	2	AY.37	0.000632
ORF1ab/nsp14A2-B	250	T250S	Aca	Tca	2	2	AY.4	0.000003
ORF1ab/nsp14A2-B	250	T250del	ACA	---	2	2	AY.4	0.000003
ORF1ab/nsp14A2-B	250	T250T	acA	acG	2	2	AY.42	0.00008
ORF1ab/nsp14A2-B	250	T250A	Aca	Gca	2	2	AY.43	0.000009
ORF1ab/nsp14A2-B	250	T250A	Aca	Gca	2	2	AY.44	0.000012
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	2	2	AY.45	0.000243
ORF1ab/nsp14A2-B	250	T250K	aCa	aAa	2	2	AY.47	0.000062
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	2	2	AY.52	0.001629
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	2	2	AY.59	0.001059
ORF1ab/nsp14A2-B	250	T250A	Aca	Gca	2	2	AY.62	0.000871
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	2	2	AY.69	0.000373
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	2	2	AY.70	0.000417
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	2	2	AY.79	0.002421
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	2	2	AY.82	0.002714
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	2	2	AY.94	0.000885
ORF1ab/nsp14A2-B	250	T250N	aCA	aAT	2	2	B.1	0.000018
ORF1ab/nsp14A2-B	250	T250del	ACA	---	2	2	B.1.1	0.000036
ORF1ab/nsp14A2-B	250	T250A	Aca	Gca	2	2	B.1.1	0.000036
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	2	2	B.1.1.25	0.001137
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	2	2	B.1.1.253	0.005013
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	2	2	B.1.1.291	0.001485
ORF1ab/nsp14A2-B	250	T250K	aCa	aAa	2	2	B.1.1.7	0.000002
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	2	2	B.1.1.71	0.012121
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	2	2	B.1.110.3	0.001437
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	2	2	B.1.177.35	0.001382
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	2	2	B.1.177.7	0.00033
ORF1ab/nsp14A2-B	250	T250K	aCa	aAa	2	2	B.1.2	0.000018
ORF1ab/nsp14A2-B	250	T250A	Aca	Gca	2	2	B.1.2	0.000018
ORF1ab/nsp14A2-B	250	T250T	acA	acT	2	2	B.1.2	0.000018
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	2	2	B.1.214	0.007326
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	2	2	B.1.241	0.001623
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	2	2	B.1.258.14	0.001961
ORF1ab/nsp14A2-B	250	T250K	aCa	aAa	2	2	B.1.258.17	0.000208
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	2	2	B.1.36.18	0.00084
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	2	2	B.1.36.36	0.001204
ORF1ab/nsp14A2-B	250	T250T	acA	acG	2	2	B.1.429	0.000047
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	2	2	B.1.466.2	0.000782
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	2	2	B.1.497	0.00063
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	2	2	B.1.517	0.000854
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	2	2	B.1.525	0.000226
ORF1ab/nsp14A2-B	250	T250K	aCa	aAa	2	2	B.1.617.2	0.000008
ORF1ab/nsp14A2-B	250	T250del	ACA	---	2	2	B.1.617.2	0.000008
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	2	2	B.1.628	0.000705
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	2	2	C.36	0.001821
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	2	2	P.1.10	0.000539
ORF1ab/nsp14A2-B	250	T250T	acA	acG	2	2	P.1.12	0.000968
ORF1ab/nsp14A2-B	250	T250del1	AcA	Gc-	1	1	A	0.000387
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	1	1	A.2.5	0.000499
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	1	1	A.2.5.2	0.001572
ORF1ab/nsp14A2-B	250	T250F	ACA	TTT	1	1	All	0
ORF1ab/nsp14A2-B	250	T250R	aCa	aGa	1	1	All	0
ORF1ab/nsp14A2-B	250	T250L	ACa	CTa	1	1	All	0
ORF1ab/nsp14A2-B	250	T250A	Aca	Gca	1	1	AY.100	0.000046
ORF1ab/nsp14A2-B	250	T250T	acA	acG	1	1	AY.103	0.000006
ORF1ab/nsp14A2-B	250	T250T	acA	acG	1	1	AY.107	0.000466
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	1	1	AY.107	0.000466
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	1	1	AY.11	0.001339
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	1	1	AY.110	0.000113
ORF1ab/nsp14A2-B	250	T250A	Aca	Gca	1	1	AY.111	0.000183
ORF1ab/nsp14A2-B	250	T250A	Aca	Gca	1	1	AY.116	0.000287
ORF1ab/nsp14A2-B	250	T250A	Aca	Gca	1	1	AY.116.1	0.000311
ORF1ab/nsp14A2-B	250	T250del	ACA	---	1	1	AY.120.2	0.001285
ORF1ab/nsp14A2-B	250	T250T	acA	acG	1	1	AY.14	0.000088
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	1	1	AY.16.1	0.00047
ORF1ab/nsp14A2-B	250	T250A	Aca	Gca	1	1	AY.20	0.000039
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	1	1	AY.23.1	0.000417
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	1	1	AY.24	0.000431
ORF1ab/nsp14A2-B	250	T250del	ACA	---	1	1	AY.25	0.000006
ORF1ab/nsp14A2-B	250	T250T	acA	acG	1	1	AY.27	0.000065
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	1	1	AY.28	0.00189
ORF1ab/nsp14A2-B	250	T250K	aCa	aAa	1	1	AY.3	0.00001
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	1	1	AY.35	0.000233
ORF1ab/nsp14A2-B	250	T250A	Aca	Gca	1	1	AY.39	0.000025
ORF1ab/nsp14A2-B	250	T250K	aCA	aAG	1	1	AY.4	0.000002
ORF1ab/nsp14A2-B	250	T250del2	aCA	a--	1	1	AY.4	0.000002
ORF1ab/nsp14A2-B	250	T250del	ACA	---	1	1	AY.4.5	0.000107
ORF1ab/nsp14A2-B	250	T250K	aCa	aAa	1	1	AY.44	0.000006
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	1	1	AY.46.1	0.001027
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	1	1	AY.46.2	0.000635
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	1	1	AY.46.5	0.000198
ORF1ab/nsp14A2-B	250	T250A	Aca	Gca	1	1	AY.5	0.000021
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	1	1	AY.50	0.000799
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	1	1	AY.55	0.000917
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	1	1	AY.57	0.000656
ORF1ab/nsp14A2-B	250	T250del1	Aca	-ca	1	1	AY.6	0.000041
ORF1ab/nsp14A2-B	250	T250del	ACA	---	1	1	AY.6	0.000041
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	1	1	AY.64	0.000595
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	1	1	AY.67	0.000464
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	1	1	AY.68	0.000274
ORF1ab/nsp14A2-B	250	T250del	ACA	---	1	1	AY.75	0.000056
ORF1ab/nsp14A2-B	250	T250T	acA	acT	1	1	AY.75	0.000056
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	1	1	AY.76	0.004831
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	1	1	AY.77	0.001127
ORF1ab/nsp14A2-B	250	T250L	ACa	CTa	1	1	AY.79	0.001211
ORF1ab/nsp14A2-B	250	T250del	ACA	---	1	1	AY.81	0.001992
ORF1ab/nsp14A2-B	250	T250S	Aca	Tca	1	1	AY.9	0.000068
ORF1ab/nsp14A2-B	250	T250del	ACA	---	1	1	AY.9	0.000068
ORF1ab/nsp14A2-B	250	T250K	aCa	aAa	1	1	AY.9.1	0.000084
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	1	1	AY.90	0.000684
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	1	1	AY.92	0.000287
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	1	1	AY.95	0.000761
ORF1ab/nsp14A2-B	250	T250T	acA	acC	1	1	AY.98.1	0.000048
ORF1ab/nsp14A2-B	250	T250A	Aca	Gca	1	1	AY.98.1	0.000048
ORF1ab/nsp14A2-B	250	T250K	aCa	aAa	1	1	AY.99	0.001049
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	1	1	AY.99.1	0.001553
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	1	1	AZ.1	0.000867
ORF1ab/nsp14A2-B	250	T250T	acA	acC	1	1	B	0.000128
ORF1ab/nsp14A2-B	250	T250S	Aca	Tca	1	1	B.1	0.000009
ORF1ab/nsp14A2-B	250	T250del	ACA	---	1	1	B.1	0.000009
ORF1ab/nsp14A2-B	250	T250P	Aca	Cca	1	1	B.1.1	0.000018
ORF1ab/nsp14A2-B	250	T250S	Aca	Tca	1	1	B.1.1	0.000018
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	1	1	B.1.1.117	0.009709
ORF1ab/nsp14A2-B	250	T250del	ACA	---	1	1	B.1.1.139	0.022727
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	1	1	B.1.1.153	0.001095
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	1	1	B.1.1.162	0.029412
ORF1ab/nsp14A2-B	250	T250P	Aca	Cca	1	1	B.1.1.176	0.000439
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	1	1	B.1.1.186	0.003436
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	1	1	B.1.1.192	0.002309
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	1	1	B.1.1.201	0.02439
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	1	1	B.1.1.208	0.012195
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	1	1	B.1.1.220	0.001859
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	1	1	B.1.1.284	0.000107
ORF1ab/nsp14A2-B	250	T250del	ACA	---	1	1	B.1.1.311	0.000358
ORF1ab/nsp14A2-B	250	T250T	acA	acG	1	1	B.1.1.318	0.000302
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	1	1	B.1.1.33	0.000421
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	1	1	B.1.1.333	0.001076
ORF1ab/nsp14A2-B	250	T250A	Aca	Gca	1	1	B.1.1.337	0.003597
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	1	1	B.1.1.348	0.000796
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	1	1	B.1.1.369	0.000446
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	1	1	B.1.1.372	0.000689
ORF1ab/nsp14A2-B	250	T250P	Aca	Cca	1	1	B.1.1.372	0.000689
ORF1ab/nsp14A2-B	250	T250T	acA	acT	1	1	B.1.1.382	0.035714
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	1	1	B.1.1.39	0.00051
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	1	1	B.1.1.397	0.002252
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	1	1	B.1.1.409	0.002833
ORF1ab/nsp14A2-B	250	T250del	ACA	---	1	1	B.1.1.434	0.000349
ORF1ab/nsp14A2-B	250	T250del	ACA	---	1	1	B.1.1.448	0.002033
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	1	1	B.1.1.459	0.015385
ORF1ab/nsp14A2-B	250	T250T	acA	acG	1	1	B.1.1.486	0.001577
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	1	1	B.1.1.487	0.005587
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	1	1	B.1.1.50	0.000679
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	1	1	B.1.1.507	0.008696
ORF1ab/nsp14A2-B	250	T250A	Aca	Gca	1	1	B.1.1.519	0.00004
ORF1ab/nsp14A2-B	250	T250T	acA	acC	1	1	B.1.1.519	0.00004
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	1	1	B.1.1.526	0.003546
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	1	1	B.1.1.57	0.011494
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	1	1	B.1.1.63	0.000386
ORF1ab/nsp14A2-B	250	T250del2	ACa	--a	1	1	B.1.1.7	0.000001
ORF1ab/nsp14A2-B	250	T250del1	ACa	-Na	1	1	B.1.1.7	0.000001
ORF1ab/nsp14A2-B	250	T250del	ACA	---	1	1	B.1.1.70	0.000341
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	1	1	B.1.120	0.007692
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	1	1	B.1.13	0.002375
ORF1ab/nsp14A2-B	250	T250T	acA	acG	1	1	B.1.160	0.000031
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	1	1	B.1.160.14	0.002119
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	1	1	B.1.160.16	0.000929
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	1	1	B.1.161	0.017241
ORF1ab/nsp14A2-B	250	T250del	ACA	---	1	1	B.1.161	0.017241
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	1	1	B.1.170	0.00431
ORF1ab/nsp14A2-B	250	T250S	Aca	Tca	1	1	B.1.177	0.000013
ORF1ab/nsp14A2-B	250	T250del2	aCA	a--	1	1	B.1.177	0.000013
ORF1ab/nsp14A2-B	250	T250del	ACA	---	1	1	B.1.177.18	0.00116
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	1	1	B.1.177.21	0.000076
ORF1ab/nsp14A2-B	250	T250del1	acA	ac-	1	1	B.1.177.4	0.000211
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	1	1	B.1.177.40	0.005155
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	1	1	B.1.177.44	0.000519
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	1	1	B.1.177.54	0.000606
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	1	1	B.1.177.6	0.000977
ORF1ab/nsp14A2-B	250	T250del	ACA	---	1	1	B.1.177.6	0.000977
ORF1ab/nsp14A2-B	250	T250del	ACA	---	1	1	B.1.177.63	0.002703
ORF1ab/nsp14A2-B	250	T250del	ACA	---	1	1	B.1.177.69	0.001484
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	1	1	B.1.177.82	0.000477
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	1	1	B.1.177.86	0.000183
ORF1ab/nsp14A2-B	250	T250del	ACA	---	1	1	B.1.2	0.000009
ORF1ab/nsp14A2-B	250	T250R	aCa	aGa	1	1	B.1.2	0.000009
ORF1ab/nsp14A2-B	250	T250T	acA	acG	1	1	B.1.221	0.000071
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	1	1	B.1.223	0.002778
ORF1ab/nsp14A2-B	250	T250T	acA	acG	1	1	B.1.234	0.000132
ORF1ab/nsp14A2-B	250	T250del	ACA	---	1	1	B.1.258.16	0.001637
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	1	1	B.1.258.2	0.004505
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	1	1	B.1.284	0.013158
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	1	1	B.1.3	0.002618
ORF1ab/nsp14A2-B	250	T250F	ACA	TTT	1	1	B.1.311	0.000275
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	1	1	B.1.320	0.001245
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	1	1	B.1.329	0.000608
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	1	1	B.1.333	0.010526
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	1	1	B.1.350	0.002933
ORF1ab/nsp14A2-B	250	T250T	acA	acG	1	1	B.1.351	0.00003
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	1	1	B.1.351.5	0.0006
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	1	1	B.1.36.7	0.004
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	1	1	B.1.362.2	0.004717
ORF1ab/nsp14A2-B	250	T250T	acA	acG	1	1	B.1.380	0.006623
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	1	1	B.1.390	0.010638
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	1	1	B.1.396	0.000706
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	1	1	B.1.404	0.001302
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	1	1	B.1.416.1	0.001563
ORF1ab/nsp14A2-B	250	T250K	aCa	aAa	1	1	B.1.429	0.000024
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	1	1	B.1.452	0.013699
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	1	1	B.1.456	0.003268
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	1	1	B.1.459	0.004082
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	1	1	B.1.523	0.002451
ORF1ab/nsp14A2-B	250	T250T	acA	acG	1	1	B.1.526	0.000024
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	1	1	B.1.540	0.009709
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	1	1	B.1.554	0.004405
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	1	1	B.1.560	0.00463
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	1	1	B.1.562	0.018519
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	1	1	B.1.570	0.002941
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	1	1	B.1.574	0.002151
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	1	1	B.1.575	0.000303
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	1	1	B.1.576	0.000907
ORF1ab/nsp14A2-B	250	T250K	aCa	aAa	1	1	B.1.596	0.000087
ORF1ab/nsp14A2-B	250	T250S	Aca	Tca	1	1	B.1.598	0.016949
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	1	1	B.1.602	0.006536
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	1	1	B.1.609	0.000479
ORF1ab/nsp14A2-B	250	T250S	AcA	TcC	1	1	B.1.617.1	0.000129
ORF1ab/nsp14A2-B	250	T250T	acA	acT	1	1	B.1.617.1	0.000129
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	1	1	B.1.618	0.004032
ORF1ab/nsp14A2-B	250	T250A	Aca	Gca	1	1	B.1.621	0.000089
ORF1ab/nsp14A2-B	250	T250del	ACA	---	1	1	B.1.630	0.005236
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	1	1	B.1.636	0.006711
ORF1ab/nsp14A2-B	250	T250del	ACA	---	1	1	B.34	0.013699
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	1	1	B.40	0.000364
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	1	1	C.14	0.004329
ORF1ab/nsp14A2-B	250	T250P	Aca	Cca	1	1	C.17	0.055556
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	1	1	C.18	0.002591
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	1	1	C.2	0.016129
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	1	1	C.36.3	0.000567
ORF1ab/nsp14A2-B	250	T250A	Aca	Gca	1	1	C.37	0.000116
ORF1ab/nsp14A2-B	250	T250S	Aca	Tca	1	1	D.2	0.000075
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	1	1	D.2	0.000075
ORF1ab/nsp14A2-B	250	T250T	acA	acT	1	1	D.2	0.000075
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	1	1	N.5	0.001767
ORF1ab/nsp14A2-B	250	T250A	Aca	Gca	1	1	P.1.14	0.000048
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	1	1	P.7	0.004367
ORF1ab/nsp14A2-B	250	T250A	Aca	Gca	1	1	Q.3	0.000145
ORF1ab/nsp14A2-B	250	T250I	aCa	aTa	1	1	Q.4	0.000455
ORF1ab/nsp14A2-B	250	T250del	ACA	---	1	1	Q.8	0.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.