CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp14A2-B : CodonNum = 239 & Codon = ccT

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp14A2-B239P239PP6164PsynccGccT771167930.88094918754-18756

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp14A2-B239P239PccGccT67937711All0.001299
ORF1ab/nsp14A2-B239P239PccGccT713982B.1.1.70.000638
ORF1ab/nsp14A2-B239P239PccGccT559598B.1.617.20.002105
ORF1ab/nsp14A2-B239P239PccGccT541542AY.740.062565
ORF1ab/nsp14A2-B239P239PccGccT531531B.1.36.160.75641
ORF1ab/nsp14A2-B239P239PccGccT410415AY.50.008466
ORF1ab/nsp14A2-B239P239PccGccT369408AY.40.000574
ORF1ab/nsp14A2-B239P239PccGccT263263P.41
ORF1ab/nsp14A2-B239P239PccGccT205225AY.430.000908
ORF1ab/nsp14A2-B239P239PccGccT198199B.1.1.5190.007863
ORF1ab/nsp14A2-B239P239PccGccT184198B.10.001685
ORF1ab/nsp14A2-B239P239PccGccT170172AY.4.20.003687
ORF1ab/nsp14A2-B239P239PccGccT58155AY.250.000349
ORF1ab/nsp14A2-B239P239PccGccT146151B.1.2580.009716
ORF1ab/nsp14A2-B239P239PccGccT135149AY.440.000822
ORF1ab/nsp14A2-B239P239PccGccT144144AY.980.011375
ORF1ab/nsp14A2-B239P239PccGccT134134B.1.177.570.037651
ORF1ab/nsp14A2-B239P239PccGccT120125AY.1030.000745
ORF1ab/nsp14A2-B239P239PccGccT122122AY.98.10.005909
ORF1ab/nsp14A2-B239P239PccGccT9497B.1.1600.002932
ORF1ab/nsp14A2-B239P239PccGccT8797B.1.1770.001146
ORF1ab/nsp14A2-B239P239PccGccT2175B.1.3510.000624
ORF1ab/nsp14A2-B239P239PccGccT6873B.1.360.009921
ORF1ab/nsp14A2-B239P239PccGccT6767AY.540.006388
ORF1ab/nsp14A2-B239P239PccGccT6267B.1.10.001125
ORF1ab/nsp14A2-B239P239PccGccT5666AY.260.001585
ORF1ab/nsp14A2-B239P239PccGccT4759AY.1020.001246
ORF1ab/nsp14A2-B239P239PccGccT4859B.1.20.000423
ORF1ab/nsp14A2-B239P239PccGccT5353B.1.619.10.033996
ORF1ab/nsp14A2-B239P239PccGccT4752B.1.4290.001106
ORF1ab/nsp14A2-B239P239PccGccT3747AY.1200.001376
ORF1ab/nsp14A2-B239P239PccGccT4646B.1.3110.01263
ORF1ab/nsp14A2-B239P239PccGccT3539P.10.000551
ORF1ab/nsp14A2-B239P239PccGccT3838B.1.1.950.745098
ORF1ab/nsp14A2-B239P239PccGccT2433AY.30.000239
ORF1ab/nsp14A2-B239P239PccGccT3032AY.1000.00138
ORF1ab/nsp14A2-B239P239PccGccT2528AY.390.000618
ORF1ab/nsp14A2-B239P239PccGccT2326AY.290.000363
ORF1ab/nsp14A2-B239P239PccGccT2626AY.46.60.001877
ORF1ab/nsp14A2-B239P239PccGccT2626B.1.6210.002301
ORF1ab/nsp14A2-B239P239PccGccT1725AY.460.001769
ORF1ab/nsp14A2-B239P239PccGccT1625P.1.140.000765
ORF1ab/nsp14A2-B239P239PccGccT2023AY.470.000622
ORF1ab/nsp14A2-B239P239PccGccT2323AY.5.40.006364
ORF1ab/nsp14A2-B239P239PccGccT123B.1.3960.000706
ORF1ab/nsp14A2-B239P239PccGccT1222AY.200.000466
ORF1ab/nsp14A2-B239P239PccGccT2222B.1.1.3370.079137
ORF1ab/nsp14A2-B239P239PccGccT2021AY.750.00112
ORF1ab/nsp14A2-B239P239PccGccT2020B.1.5260.00047
ORF1ab/nsp14A2-B239P239PccGccT1818A.10.005073
ORF1ab/nsp14A2-B239P239PccGccT1818AY.340.001745
ORF1ab/nsp14A2-B239P239PccGccT118B.1.2340.000132
ORF1ab/nsp14A2-B239P239PccGccT1717AY.450.002069
ORF1ab/nsp14A2-B239P239PccGccT1616A.23.10.011268
ORF1ab/nsp14A2-B239P239PccGccT116AY.370.000316
ORF1ab/nsp14A2-B239P239PccGccT1616P.1.100.004312
ORF1ab/nsp14A2-B239P239PccGccT1616Q.40.007276
ORF1ab/nsp14A2-B239P239PccGccT1315AY.330.000868
ORF1ab/nsp14A2-B239P239PccGccT1314AY.1190.000459
ORF1ab/nsp14A2-B239P239PccGccT1214AY.420.000483
ORF1ab/nsp14A2-B239P239PccGccT413AY.46.40.000658
ORF1ab/nsp14A2-B239P239PccGccT713AY.60.000288
ORF1ab/nsp14A2-B239P239PccGccT913C.180.023316
ORF1ab/nsp14A2-B239P239PccGccT1212B.1.1.2400.056338
ORF1ab/nsp14A2-B239P239PccGccT1212B.1.1.330.005051
ORF1ab/nsp14A2-B239P239PccGccT1212B.1.258.170.001248
ORF1ab/nsp14A2-B239P239PccGccT1112B.1.466.20.004304
ORF1ab/nsp14A2-B239P239PccGccT1111AY.1130.001566
ORF1ab/nsp14A2-B239P239PccGccT1111AY.130.001771
ORF1ab/nsp14A2-B239P239PccGccT1011AY.7.10.001127
ORF1ab/nsp14A2-B239P239PccGccT811B.1.2430.000557
ORF1ab/nsp14A2-B239P239PccGccT1010AY.240.00431
ORF1ab/nsp14A2-B239P239PccGccT910B.1.1.4340.003137
ORF1ab/nsp14A2-B239P239PccGccT910B.1.2210.000639
ORF1ab/nsp14A2-B239P239PccGccT510C.370.00058
ORF1ab/nsp14A2-B239P239PccGccT1010P.1.80.047847
ORF1ab/nsp14A2-B239P239PccGccT89AY.840.0035
ORF1ab/nsp14A2-B239P239PccGccT99B.1.177.770.006536
ORF1ab/nsp14A2-B239P239PccGccT99B.1.36.290.004656
ORF1ab/nsp14A2-B239P239PccGccT99B.1.3910.010147
ORF1ab/nsp14A2-B239P239PccGccT88AY.1040.015873
ORF1ab/nsp14A2-B239P239PccGccT88AY.1180.000501
ORF1ab/nsp14A2-B239P239PccGccT88P.20.001493
ORF1ab/nsp14A2-B239P239PccGccT27AY.1110.000366
ORF1ab/nsp14A2-B239P239PccGccT77AY.120.10.002247
ORF1ab/nsp14A2-B239P239PccGccT67AY.1210.000812
ORF1ab/nsp14A2-B239P239PccGccT67AY.360.000889
ORF1ab/nsp14A2-B239P239PccGccT57AY.9.20.000184
ORF1ab/nsp14A2-B239P239PccGccT57B.1.1.390.002548
ORF1ab/nsp14A2-B239P239PccGccT77B.1.1.500.004752
ORF1ab/nsp14A2-B239P239PccGccT77B.1.2060.00571
ORF1ab/nsp14A2-B239P239PccGccT56AY.300.001979
ORF1ab/nsp14A2-B239P239PccGccT66AY.700.001251
ORF1ab/nsp14A2-B239P239PccGccT56B.1.5250.000566
ORF1ab/nsp14A2-B239P239PccGccT66B.1.6250.014118
ORF1ab/nsp14A2-B239P239PccGccT36D.20.000225
ORF1ab/nsp14A2-B239P239PccGccT66N.90.035714
ORF1ab/nsp14A2-B239P239PccGccT56P.1.70.001596
ORF1ab/nsp14A2-B239P239PccGccT55AY.1170.000423
ORF1ab/nsp14A2-B239P239PccGccT45AY.230.000279
ORF1ab/nsp14A2-B239P239PccGccT55AY.5.30.001687
ORF1ab/nsp14A2-B239P239PccGccT55B.1.1.2160.004452
ORF1ab/nsp14A2-B239P239PccGccT45B.1.177.70.000659
ORF1ab/nsp14A2-B239P239PccGccT55B.1.617.10.000645
ORF1ab/nsp14A2-B239P239PccGccT44AY.34.10.00204
ORF1ab/nsp14A2-B239P239PccGccT44AY.350.000932
ORF1ab/nsp14A2-B239P239PccGccT44AY.790.004843
ORF1ab/nsp14A2-B239P239PccGccT34AY.99.20.000276
ORF1ab/nsp14A2-B239P239PccGccT34B.1.1.2140.000166
ORF1ab/nsp14A2-B239P239PccGccT44B.1.1.740.017241
ORF1ab/nsp14A2-B239P239PccGccT34B.1.177.40.000633
ORF1ab/nsp14A2-B239P239PccGccT24B.1.4270.000101
ORF1ab/nsp14A2-B239P239PccGccT44B.1.5240.005626
ORF1ab/nsp14A2-B239P239PccGccT34B.1.5960.000261
ORF1ab/nsp14A2-B239P239PccGccT14B.1.6190.000871
ORF1ab/nsp14A2-B239P239PccGccT33A0.001161
ORF1ab/nsp14A2-B239P239PccGccT33AY.650.001599
ORF1ab/nsp14A2-B239P239PccGccT13AY.70.000196
ORF1ab/nsp14A2-B239P239PccGccT33AY.90.000203
ORF1ab/nsp14A2-B239P239PccGccT33AY.920.000862
ORF1ab/nsp14A2-B239P239PccGccT13AY.990.001049
ORF1ab/nsp14A2-B239P239PccGccT33B.1.1.280.000934
ORF1ab/nsp14A2-B239P239PccGccT33B.1.1.470.016043
ORF1ab/nsp14A2-B239P239PccGccT33B.1.1390.002199
ORF1ab/nsp14A2-B239P239PccGccT23B.1.177.730.001133
ORF1ab/nsp14A2-B239P239PccGccT33B.1.5060.071429
ORF1ab/nsp14A2-B239P239PccGccT33C.160.003181
ORF1ab/nsp14A2-B239P239PccGccT33C.360.002732
ORF1ab/nsp14A2-B239P239PccGccT33Q.80.000495
ORF1ab/nsp14A2-B239P239PccGccT22A.20.001324
ORF1ab/nsp14A2-B239P239PccGccT22AY.10.000791
ORF1ab/nsp14A2-B239P239PccGccT22AY.1160.000574
ORF1ab/nsp14A2-B239P239PccGccT22AY.160.000759
ORF1ab/nsp14A2-B239P239PccGccT22AY.20.000712
ORF1ab/nsp14A2-B239P239PccGccT22AY.380.000999
ORF1ab/nsp14A2-B239P239PccGccT22AY.4.50.000215
ORF1ab/nsp14A2-B239P239PccGccT22AY.5.10.007519
ORF1ab/nsp14A2-B239P239PccGccT12AY.530.000288
ORF1ab/nsp14A2-B239P239PccGccT12AY.610.000105
ORF1ab/nsp14A2-B239P239PccGccT22AY.7.20.001119
ORF1ab/nsp14A2-B239P239PccGccT22AY.75.10.000361
ORF1ab/nsp14A2-B239P239PccGccT22AY.780.003082
ORF1ab/nsp14A2-B239P239PccGccT22AY.880.001768
ORF1ab/nsp14A2-B239P239PccGccT12AY.9.10.000084
ORF1ab/nsp14A2-B239P239PccGccT22AY.910.001461
ORF1ab/nsp14A2-B239P239PccGccT22AY.99.10.003106
ORF1ab/nsp14A2-B239P239PccGccT22B0.000256
ORF1ab/nsp14A2-B239P239PccGccT22B.1.1.10.000653
ORF1ab/nsp14A2-B239P239PccGccT22B.1.1.1410.004024
ORF1ab/nsp14A2-B239P239PccGccT22B.1.1.2220.000408
ORF1ab/nsp14A2-B239P239PccGccT22B.1.1.250.001137
ORF1ab/nsp14A2-B239P239PccGccT22B.1.1.2650.006309
ORF1ab/nsp14A2-B239P239PccGccT22B.1.1.2940.002532
ORF1ab/nsp14A2-B239P239PccGccT22B.1.1.3060.000877
ORF1ab/nsp14A2-B239P239PccGccT22B.1.1.3970.004505
ORF1ab/nsp14A2-B239P239PccGccT22B.1.1280.001271
ORF1ab/nsp14A2-B239P239PccGccT22B.1.1340.010929
ORF1ab/nsp14A2-B239P239PccGccT22B.1.177.440.001038
ORF1ab/nsp14A2-B239P239PccGccT22B.1.177.860.000367
ORF1ab/nsp14A2-B239P239PccGccT22B.1.177.90.002663
ORF1ab/nsp14A2-B239P239PccGccT22B.1.220.002635
ORF1ab/nsp14A2-B239P239PccGccT22B.1.3670.001585
ORF1ab/nsp14A2-B239P239PccGccT22B.1.4280.002041
ORF1ab/nsp14A2-B239P239PccGccT22B.1.6320.013423
ORF1ab/nsp14A2-B239P239PccGccT22B.6.60.001778
ORF1ab/nsp14A2-B239P239PccGccT22P.1.17.10.00175
ORF1ab/nsp14A2-B239P239PccGccT11A.270.001656
ORF1ab/nsp14A2-B239P239PccGccT11AY.100.00053
ORF1ab/nsp14A2-B239P239PccGccT11AY.1010.00049
ORF1ab/nsp14A2-B239P239PccGccT11AY.1060.000335
ORF1ab/nsp14A2-B239P239PccGccT11AY.116.10.000311
ORF1ab/nsp14A2-B239P239PccGccT11AY.16.10.00047
ORF1ab/nsp14A2-B239P239PccGccT11AY.210.001898
ORF1ab/nsp14A2-B239P239PccGccT11AY.320.000532
ORF1ab/nsp14A2-B239P239PccGccT11AY.4.2.10.000149
ORF1ab/nsp14A2-B239P239PccGccT11AY.46.50.000198
ORF1ab/nsp14A2-B239P239PccGccT11AY.520.000814
ORF1ab/nsp14A2-B239P239PccGccT11AY.550.000917
ORF1ab/nsp14A2-B239P239PccGccT11AY.570.000656
ORF1ab/nsp14A2-B239P239PccGccT11AY.580.000907
ORF1ab/nsp14A2-B239P239PccGccT11AY.590.00053
ORF1ab/nsp14A2-B239P239PccGccT11AY.600.000938
ORF1ab/nsp14A2-B239P239PccGccT11AY.620.000436
ORF1ab/nsp14A2-B239P239PccGccT11AY.670.000464
ORF1ab/nsp14A2-B239P239PccGccT11AY.680.000274
ORF1ab/nsp14A2-B239P239PccGccT11AY.860.00083
ORF1ab/nsp14A2-B239P239PccGccT11AY.890.004902
ORF1ab/nsp14A2-B239P239PccGccT11AY.940.000443
ORF1ab/nsp14A2-B239P239PccGccT11B.1.1.1170.009709
ORF1ab/nsp14A2-B239P239PccGccT11B.1.1.1280.007092
ORF1ab/nsp14A2-B239P239PccGccT11B.1.1.1740.003378
ORF1ab/nsp14A2-B239P239PccGccT11B.1.1.1760.000439
ORF1ab/nsp14A2-B239P239PccGccT11B.1.1.1920.002309
ORF1ab/nsp14A2-B239P239PccGccT11B.1.1.1980.001468
ORF1ab/nsp14A2-B239P239PccGccT11B.1.1.2050.003717
ORF1ab/nsp14A2-B239P239PccGccT11B.1.1.2310.003096
ORF1ab/nsp14A2-B239P239PccGccT11B.1.1.2840.000107
ORF1ab/nsp14A2-B239P239PccGccT11B.1.1.3050.003861
ORF1ab/nsp14A2-B239P239PccGccT11B.1.1.3120.001912
ORF1ab/nsp14A2-B239P239PccGccT11B.1.1.3180.000302
ORF1ab/nsp14A2-B239P239PccGccT11B.1.1.3260.001761
ORF1ab/nsp14A2-B239P239PccGccT11B.1.1.3430.020833
ORF1ab/nsp14A2-B239P239PccGccT11B.1.1.3560.008547
ORF1ab/nsp14A2-B239P239PccGccT11B.1.1.3690.000446
ORF1ab/nsp14A2-B239P239PccGccT11B.1.1.3700.012658
ORF1ab/nsp14A2-B239P239PccGccT11B.1.1.5260.003546
ORF1ab/nsp14A2-B239P239PccGccT11B.1.1.540.003021
ORF1ab/nsp14A2-B239P239PccGccT11B.1.130.002375
ORF1ab/nsp14A2-B239P239PccGccT11B.1.1310.008772
ORF1ab/nsp14A2-B239P239PccGccT11B.1.160.150.00495
ORF1ab/nsp14A2-B239P239PccGccT11B.1.177.330.001645
ORF1ab/nsp14A2-B239P239PccGccT11B.1.177.380.010417
ORF1ab/nsp14A2-B239P239PccGccT11B.1.177.60.000977
ORF1ab/nsp14A2-B239P239PccGccT11B.1.177.750.001041
ORF1ab/nsp14A2-B239P239PccGccT11B.1.2100.002132
ORF1ab/nsp14A2-B239P239PccGccT11B.1.258.110.000396
ORF1ab/nsp14A2-B239P239PccGccT11B.1.258.140.00098
ORF1ab/nsp14A2-B239P239PccGccT11B.1.2600.003344
ORF1ab/nsp14A2-B239P239PccGccT11B.1.2790.000514
ORF1ab/nsp14A2-B239P239PccGccT11B.1.2980.002114
ORF1ab/nsp14A2-B239P239PccGccT11B.1.36.10.00114
ORF1ab/nsp14A2-B239P239PccGccT11B.1.36.170.000494
ORF1ab/nsp14A2-B239P239PccGccT11B.1.36.310.001751
ORF1ab/nsp14A2-B239P239PccGccT11B.1.36.80.001
ORF1ab/nsp14A2-B239P239PccGccT11B.1.3970.004854
ORF1ab/nsp14A2-B239P239PccGccT11B.1.4560.003268
ORF1ab/nsp14A2-B239P239PccGccT11B.1.4590.004082
ORF1ab/nsp14A2-B239P239PccGccT11B.1.4990.00105
ORF1ab/nsp14A2-B239P239PccGccT11B.1.5510.00129
ORF1ab/nsp14A2-B239P239PccGccT11B.1.5600.00463
ORF1ab/nsp14A2-B239P239PccGccT11B.1.5800.004065
ORF1ab/nsp14A2-B239P239PccGccT11B.1.5970.00463
ORF1ab/nsp14A2-B239P239PccGccT11B.1.6090.000479
ORF1ab/nsp14A2-B239P239PccGccT11B.1.6280.000352
ORF1ab/nsp14A2-B239P239PccGccT11B.1.6370.000073
ORF1ab/nsp14A2-B239P239PccGccT11B.1.80.001972
ORF1ab/nsp14A2-B239P239PccGccT11B.1.90.006173
ORF1ab/nsp14A2-B239P239PccGccT11B.1.930.000934
ORF1ab/nsp14A2-B239P239PccGccT11B.400.000364
ORF1ab/nsp14A2-B239P239PccGccT11C.2.10.006667
ORF1ab/nsp14A2-B239P239PccGccT11C.290.0625
ORF1ab/nsp14A2-B239P239PccGccT11P.1.170.000162
ORF1ab/nsp14A2-B239P239PccGccT11Q.30.000145
ORF1ab/nsp14A2-B239P239PccGccT11Q.70.001111