CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp14A2-B : CodonNum = 239 & Codon = ccA

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp14A2-B239P239PP6164PsynccGccA77118740.11334518754-18756

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp14A2-B239P239PccGccA8747711All0.000167
ORF1ab/nsp14A2-B239P239PccGccA267982B.1.1.70.000239
ORF1ab/nsp14A2-B239P239PccGccA39598B.1.617.20.000147
ORF1ab/nsp14A2-B239P239PccGccA1542AY.740.000116
ORF1ab/nsp14A2-B239P239PccGccA5415AY.50.000103
ORF1ab/nsp14A2-B239P239PccGccA39408AY.40.000061
ORF1ab/nsp14A2-B239P239PccGccA20225AY.430.000089
ORF1ab/nsp14A2-B239P239PccGccA1199B.1.1.5190.00004
ORF1ab/nsp14A2-B239P239PccGccA14198B.10.000128
ORF1ab/nsp14A2-B239P239PccGccA2172AY.4.20.000043
ORF1ab/nsp14A2-B239P239PccGccA97155AY.250.000583
ORF1ab/nsp14A2-B239P239PccGccA5151B.1.2580.000333
ORF1ab/nsp14A2-B239P239PccGccA12149AY.440.000073
ORF1ab/nsp14A2-B239P239PccGccA5125AY.1030.000031
ORF1ab/nsp14A2-B239P239PccGccA397B.1.1600.000094
ORF1ab/nsp14A2-B239P239PccGccA897B.1.1770.000105
ORF1ab/nsp14A2-B239P239PccGccA5475B.1.3510.001605
ORF1ab/nsp14A2-B239P239PccGccA473B.1.360.000584
ORF1ab/nsp14A2-B239P239PccGccA367B.1.10.000054
ORF1ab/nsp14A2-B239P239PccGccA1066AY.260.000283
ORF1ab/nsp14A2-B239P239PccGccA1259AY.1020.000318
ORF1ab/nsp14A2-B239P239PccGccA1159B.1.20.000097
ORF1ab/nsp14A2-B239P239PccGccA552B.1.4290.000118
ORF1ab/nsp14A2-B239P239PccGccA1047AY.1200.000372
ORF1ab/nsp14A2-B239P239PccGccA4444Z.10.127168
ORF1ab/nsp14A2-B239P239PccGccA439P.10.000063
ORF1ab/nsp14A2-B239P239PccGccA933AY.30.00009
ORF1ab/nsp14A2-B239P239PccGccA232AY.1000.000092
ORF1ab/nsp14A2-B239P239PccGccA328AY.390.000074
ORF1ab/nsp14A2-B239P239PccGccA326AY.290.000047
ORF1ab/nsp14A2-B239P239PccGccA825AY.460.000833
ORF1ab/nsp14A2-B239P239PccGccA925P.1.140.00043
ORF1ab/nsp14A2-B239P239PccGccA323AY.470.000093
ORF1ab/nsp14A2-B239P239PccGccA1022AY.200.000389
ORF1ab/nsp14A2-B239P239PccGccA121AY.750.000056
ORF1ab/nsp14A2-B239P239PccGccA1718B.1.2340.002243
ORF1ab/nsp14A2-B239P239PccGccA1516AY.370.004741
ORF1ab/nsp14A2-B239P239PccGccA215AY.330.000134
ORF1ab/nsp14A2-B239P239PccGccA214AY.420.00008
ORF1ab/nsp14A2-B239P239PccGccA1414B.1.6230.007511
ORF1ab/nsp14A2-B239P239PccGccA913AY.46.40.001481
ORF1ab/nsp14A2-B239P239PccGccA613AY.60.000247
ORF1ab/nsp14A2-B239P239PccGccA311B.1.2430.000209
ORF1ab/nsp14A2-B239P239PccGccA110B.1.1.4340.000349
ORF1ab/nsp14A2-B239P239PccGccA110B.1.2210.000071
ORF1ab/nsp14A2-B239P239PccGccA510C.370.00058
ORF1ab/nsp14A2-B239P239PccGccA19AY.840.000437
ORF1ab/nsp14A2-B239P239PccGccA57AY.1110.000916
ORF1ab/nsp14A2-B239P239PccGccA17AY.1210.000135
ORF1ab/nsp14A2-B239P239PccGccA17AY.360.000148
ORF1ab/nsp14A2-B239P239PccGccA27AY.9.20.000073
ORF1ab/nsp14A2-B239P239PccGccA27B.1.1.390.001019
ORF1ab/nsp14A2-B239P239PccGccA77B.1.36.180.002941
ORF1ab/nsp14A2-B239P239PccGccA16AY.300.000396
ORF1ab/nsp14A2-B239P239PccGccA16B.1.5250.000113
ORF1ab/nsp14A2-B239P239PccGccA26D.20.00015
ORF1ab/nsp14A2-B239P239PccGccA16P.1.70.000319
ORF1ab/nsp14A2-B239P239PccGccA15AY.230.00007
ORF1ab/nsp14A2-B239P239PccGccA55AY.3.10.000426
ORF1ab/nsp14A2-B239P239PccGccA44AY.900.002738
ORF1ab/nsp14A2-B239P239PccGccA14AY.99.20.000092
ORF1ab/nsp14A2-B239P239PccGccA14B.1.1.2140.000055
ORF1ab/nsp14A2-B239P239PccGccA14B.1.177.40.000211
ORF1ab/nsp14A2-B239P239PccGccA24B.1.4270.000101
ORF1ab/nsp14A2-B239P239PccGccA14B.1.5960.000087
ORF1ab/nsp14A2-B239P239PccGccA34B.1.6190.002613
ORF1ab/nsp14A2-B239P239PccGccA23AY.70.000392
ORF1ab/nsp14A2-B239P239PccGccA23AY.990.002099
ORF1ab/nsp14A2-B239P239PccGccA13B.1.177.730.000566
ORF1ab/nsp14A2-B239P239PccGccA12AY.530.000288
ORF1ab/nsp14A2-B239P239PccGccA12AY.610.000105
ORF1ab/nsp14A2-B239P239PccGccA22AY.870.001665
ORF1ab/nsp14A2-B239P239PccGccA12AY.9.10.000084
ORF1ab/nsp14A2-B239P239PccGccA22B.1.1.3230.028169
ORF1ab/nsp14A2-B239P239PccGccA22B.1.1.5170.013605
ORF1ab/nsp14A2-B239P239PccGccA22B.1.5770.001375
ORF1ab/nsp14A2-B239P239PccGccA22B.6.30.052632
ORF1ab/nsp14A2-B239P239PccGccA11A.210.00277
ORF1ab/nsp14A2-B239P239PccGccA11AE.80.000489
ORF1ab/nsp14A2-B239P239PccGccA11AY.1050.000643
ORF1ab/nsp14A2-B239P239PccGccA11AY.1140.000231
ORF1ab/nsp14A2-B239P239PccGccA11AY.39.10.00004
ORF1ab/nsp14A2-B239P239PccGccA11AY.930.000273
ORF1ab/nsp14A2-B239P239PccGccA11B.1.1.5180.006329
ORF1ab/nsp14A2-B239P239PccGccA11B.1.177.500.004695
ORF1ab/nsp14A2-B239P239PccGccA11B.1.2650.001271
ORF1ab/nsp14A2-B239P239PccGccA11B.1.3490.000715
ORF1ab/nsp14A2-B239P239PccGccA11B.1.5010.007353
ORF1ab/nsp14A2-B239P239PccGccA11B.1.5950.000261
ORF1ab/nsp14A2-B239P239PccGccA11B.6.10.026316
ORF1ab/nsp14A2-B239P239PccGccA11Q.10.000126
ORF1ab/nsp14A2-B239P239PccGccA11W.40.001351

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.