CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp14A2-B : CodonNum = 228

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp14A2-B228H228HH6153HsyncaTcaC606606118721-18723
ORF1ab/nsp14A2-B228H228RH6153RnonsyncAtcGt2302290.99565218721-18723
ORF1ab/nsp14A2-B228H228RH6153RnonsyncATcGG23010.0043478318721-18723
ORF1ab/nsp14A2-B228H228delH6153deldelCAT---9090118721-18723
ORF1ab/nsp14A2-B228H228YH6153YnonsynCatTat68660.97058818721-18723
ORF1ab/nsp14A2-B228H228YH6153YnonsynCaTTaC6820.029411818721-18723
ORF1ab/nsp14A2-B228H228LH6153LnonsyncAtcTt34330.97058818721-18723
ORF1ab/nsp14A2-B228H228LH6153LnonsynCATTTA3410.029411818721-18723
ORF1ab/nsp14A2-B228H228QH6153QnonsyncaTcaG1390.69230818721-18723
ORF1ab/nsp14A2-B228H228QH6153QnonsyncaTcaA1340.30769218721-18723
ORF1ab/nsp14A2-B228H228NH6153NnonsynCatAat99118721-18723
ORF1ab/nsp14A2-B228H228PH6153PnonsyncAtcCt320.66666718721-18723
ORF1ab/nsp14A2-B228H228del2H6153del2delCAt--t320.66666718721-18723
ORF1ab/nsp14A2-B228H228PH6153PnonsyncATcCC310.33333318721-18723
ORF1ab/nsp14A2-B228H228del2H6153del2delcATc--310.33333318721-18723
ORF1ab/nsp14A2-B228H228XH6153XnonsynCaTTaA22118721-18723
ORF1ab/nsp14A2-B228H228del1H6153del1delCaTGa-210.518721-18723
ORF1ab/nsp14A2-B228H228del1H6153del1delcaTca-210.518721-18723
ORF1ab/nsp14A2-B228H228SH6153SnonsynCAtTCt11118721-18723

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp14A2-B228H228HcaTcaC606606All0.000116
ORF1ab/nsp14A2-B228H228RcAtcGt229230All0.000044
ORF1ab/nsp14A2-B228H228RcATcGG1230All0
ORF1ab/nsp14A2-B228H228RcAtcGt176176B.1.1.70.000158
ORF1ab/nsp14A2-B228H228HcaTcaC102102B.1.1.70.000091
ORF1ab/nsp14A2-B228H228delCAT---9090All0.000017
ORF1ab/nsp14A2-B228H228HcaTcaC7575AY.40.000117
ORF1ab/nsp14A2-B228H228YCatTat6668All0.000013
ORF1ab/nsp14A2-B228H228YCaTTaC268All0
ORF1ab/nsp14A2-B228H228HcaTcaC6161B.1.617.20.00023
ORF1ab/nsp14A2-B228H228HcaTcaC4646AY.740.00532
ORF1ab/nsp14A2-B228H228delCAT---3939B.1.1.70.000035
ORF1ab/nsp14A2-B228H228LcAtcTt3334All0.000006
ORF1ab/nsp14A2-B228H228LCATTTA134All0
ORF1ab/nsp14A2-B228H228HcaTcaC3333AY.430.000146
ORF1ab/nsp14A2-B228H228HcaTcaC2828B.1.20.000247
ORF1ab/nsp14A2-B228H228HcaTcaC2828B.1.4071
ORF1ab/nsp14A2-B228H228HcaTcaC2424AY.250.000144
ORF1ab/nsp14A2-B228H228HcaTcaC2424B.1.2400.005174
ORF1ab/nsp14A2-B228H228LcAtcTt1616B.1.1.70.000014
ORF1ab/nsp14A2-B228H228YCatTat1616B.1.1.70.000014
ORF1ab/nsp14A2-B228H228HcaTcaC1414B.1.1.3020.029046
ORF1ab/nsp14A2-B228H228QcaTcaG913All0.000002
ORF1ab/nsp14A2-B228H228QcaTcaA413All0.000001
ORF1ab/nsp14A2-B228H228HcaTcaC1212B.1.10.000218
ORF1ab/nsp14A2-B228H228HcaTcaC1212B.1.3110.003295
ORF1ab/nsp14A2-B228H228HcaTcaC1212B.110.061538
ORF1ab/nsp14A2-B228H228HcaTcaC1111AY.200.000428
ORF1ab/nsp14A2-B228H228HcaTcaC1111AY.390.000272
ORF1ab/nsp14A2-B228H228HcaTcaC1111B.1.1770.000145
ORF1ab/nsp14A2-B228H228LcAtcTt1010B.1.1770.000132
ORF1ab/nsp14A2-B228H228NCatAat99All0.000002
ORF1ab/nsp14A2-B228H228YCatTat99AY.440.000055
ORF1ab/nsp14A2-B228H228HcaTcaC88AY.440.000049
ORF1ab/nsp14A2-B228H228HcaTcaC88B.1.2430.000557
ORF1ab/nsp14A2-B228H228HcaTcaC77AY.1020.000186
ORF1ab/nsp14A2-B228H228HcaTcaC77AY.1170.000592
ORF1ab/nsp14A2-B228H228RcAtcGt66B.1.10.000109
ORF1ab/nsp14A2-B228H228RcAtcGt66B.1.1770.000079
ORF1ab/nsp14A2-B228H228delCAT---55AY.430.000022
ORF1ab/nsp14A2-B228H228QcaTcaG45B.1.1.70.000004
ORF1ab/nsp14A2-B228H228QcaTcaA15B.1.1.70.000001
ORF1ab/nsp14A2-B228H228RcAtcGt44AY.1000.000184
ORF1ab/nsp14A2-B228H228RcAtcGt44AY.40.000006
ORF1ab/nsp14A2-B228H228delCAT---44AY.40.000006
ORF1ab/nsp14A2-B228H228NCatAat44AY.440.000024
ORF1ab/nsp14A2-B228H228delCAT---44B.1.1770.000053
ORF1ab/nsp14A2-B228H228HcaTcaC44B.1.2580.000266
ORF1ab/nsp14A2-B228H228HcaTcaC44B.1.4290.000094
ORF1ab/nsp14A2-B228H228delCAT---44B.1.617.20.000015
ORF1ab/nsp14A2-B228H228YCatTat44B.1.617.20.000015
ORF1ab/nsp14A2-B228H228PcAtcCt23All0
ORF1ab/nsp14A2-B228H228del2CAt--t23All0
ORF1ab/nsp14A2-B228H228del2cATc--13All0
ORF1ab/nsp14A2-B228H228PcATcCC13All0
ORF1ab/nsp14A2-B228H228HcaTcaC33AY.1030.000019
ORF1ab/nsp14A2-B228H228delCAT---33AY.250.000018
ORF1ab/nsp14A2-B228H228HcaTcaC33AY.3.10.000256
ORF1ab/nsp14A2-B228H228YCatTat33AY.40.000005
ORF1ab/nsp14A2-B228H228HcaTcaC33AY.9.20.00011
ORF1ab/nsp14A2-B228H228HcaTcaC33B.10.000027
ORF1ab/nsp14A2-B228H228delCAT---33B.1.10.000054
ORF1ab/nsp14A2-B228H228YCatTat33B.1.1.1570.00274
ORF1ab/nsp14A2-B228H228RcAtcGt33B.1.1.330.001263
ORF1ab/nsp14A2-B228H228HcaTcaC33B.1.1.4320.003797
ORF1ab/nsp14A2-B228H228YCatTat33B.1.20.000026
ORF1ab/nsp14A2-B228H228HcaTcaC33B.1.5260.000071
ORF1ab/nsp14A2-B228H228RcAtcGt33B.1.617.20.000011
ORF1ab/nsp14A2-B228H228HcaTcaC33C.370.000348
ORF1ab/nsp14A2-B228H228HcaTcaC33P.10.000047
ORF1ab/nsp14A2-B228H228YCatTat33S.10.014851
ORF1ab/nsp14A2-B228H228XCaTTaA220.111111
ORF1ab/nsp14A2-B228H228YCaTTaC220.111111
ORF1ab/nsp14A2-B228H228del2CAt--t220.111111
ORF1ab/nsp14A2-B228H228XCaTTaA22All0
ORF1ab/nsp14A2-B228H228del1caTca-12All0
ORF1ab/nsp14A2-B228H228del1CaTGa-12All0
ORF1ab/nsp14A2-B228H228HcaTcaC22AY.1000.000092
ORF1ab/nsp14A2-B228H228RcAtcGt22AY.1020.000053
ORF1ab/nsp14A2-B228H228HcaTcaC22AY.1200.000074
ORF1ab/nsp14A2-B228H228YCatTat22AY.1210.000271
ORF1ab/nsp14A2-B228H228RcAtcGt22AY.290.000032
ORF1ab/nsp14A2-B228H228HcaTcaC22AY.30.00002
ORF1ab/nsp14A2-B228H228YCatTat22AY.370.000632
ORF1ab/nsp14A2-B228H228HcaTcaC22AY.380.000999
ORF1ab/nsp14A2-B228H228RcAtcGt22AY.430.000009
ORF1ab/nsp14A2-B228H228RcAtcGt22AY.440.000012
ORF1ab/nsp14A2-B228H228LcAtcTt22AY.460.000208
ORF1ab/nsp14A2-B228H228HcaTcaC22AY.680.000547
ORF1ab/nsp14A2-B228H228NCatAat22B.10.000018
ORF1ab/nsp14A2-B228H228YCatTat22B.10.000018
ORF1ab/nsp14A2-B228H228delCAT---22B.10.000018
ORF1ab/nsp14A2-B228H228YCatTat22B.1.10.000036
ORF1ab/nsp14A2-B228H228HcaTcaC22B.1.1.3170.000823
ORF1ab/nsp14A2-B228H228delCAT---22B.1.177.690.002967
ORF1ab/nsp14A2-B228H228RcAtcGt22B.1.20.000018
ORF1ab/nsp14A2-B228H228RcAtcGt22B.1.2350.005038
ORF1ab/nsp14A2-B228H228LcAtcTt22B.1.5260.000047
ORF1ab/nsp14A2-B228H228YCatTat22P.10.000032
ORF1ab/nsp14A2-B228H228HcaTcaC22Q.30.00029
ORF1ab/nsp14A2-B228H228SCAtTCt11All0
ORF1ab/nsp14A2-B228H228HcaTcaC11AU.20.002421
ORF1ab/nsp14A2-B228H228QcaTcaG11AY.1020.000027
ORF1ab/nsp14A2-B228H228YCatTat11AY.1030.000006
ORF1ab/nsp14A2-B228H228RcAtcGt11AY.1190.000035
ORF1ab/nsp14A2-B228H228YCatTat11AY.160.00038
ORF1ab/nsp14A2-B228H228YCatTat11AY.200.000039
ORF1ab/nsp14A2-B228H228QcaTcaA11AY.250.000006
ORF1ab/nsp14A2-B228H228HcaTcaC11AY.260.000028
ORF1ab/nsp14A2-B228H228QcaTcaG11AY.290.000016
ORF1ab/nsp14A2-B228H228HcaTcaC11AY.290.000016
ORF1ab/nsp14A2-B228H228HcaTcaC11AY.330.000067
ORF1ab/nsp14A2-B228H228HcaTcaC11AY.340.000097
ORF1ab/nsp14A2-B228H228YCatTat11AY.390.000025
ORF1ab/nsp14A2-B228H228RcAtcGt11AY.390.000025
ORF1ab/nsp14A2-B228H228RcAtcGt11AY.39.10.00004
ORF1ab/nsp14A2-B228H228delCAT---11AY.39.10.00004
ORF1ab/nsp14A2-B228H228HcaTcaC11AY.39.1.10.000725
ORF1ab/nsp14A2-B228H228QcaTcaA11AY.40.000002
ORF1ab/nsp14A2-B228H228HcaTcaC11AY.4.20.000022
ORF1ab/nsp14A2-B228H228RcAtcGt11AY.4.20.000022
ORF1ab/nsp14A2-B228H228QcaTcaG11AY.4.20.000022
ORF1ab/nsp14A2-B228H228delCAT---11AY.4.50.000107
ORF1ab/nsp14A2-B228H228YCatTat11AY.420.00004
ORF1ab/nsp14A2-B228H228LcAtcTt11AY.430.000004
ORF1ab/nsp14A2-B228H228del2cATc--11AY.430.000004
ORF1ab/nsp14A2-B228H228SCAtTCt11AY.430.000004
ORF1ab/nsp14A2-B228H228YCatTat11AY.430.000004
ORF1ab/nsp14A2-B228H228HcaTcaC11AY.460.000104
ORF1ab/nsp14A2-B228H228LCATTTA11AY.480.000465
ORF1ab/nsp14A2-B228H228HcaTcaC11AY.50.000021
ORF1ab/nsp14A2-B228H228YCatTat11AY.50.000021
ORF1ab/nsp14A2-B228H228delCAT---11AY.60.000041
ORF1ab/nsp14A2-B228H228HcaTcaC11AY.620.000436
ORF1ab/nsp14A2-B228H228RcATcGG11AY.670.000464
ORF1ab/nsp14A2-B228H228delCAT---11AY.720.001361
ORF1ab/nsp14A2-B228H228delCAT---11AY.730.000665
ORF1ab/nsp14A2-B228H228HcaTcaC11AY.750.000056
ORF1ab/nsp14A2-B228H228HcaTcaC11AY.75.10.00018
ORF1ab/nsp14A2-B228H228delCAT---11AY.810.001992
ORF1ab/nsp14A2-B228H228delCAT---11AY.90.000068
ORF1ab/nsp14A2-B228H228YCatTat11AY.9.20.000037
ORF1ab/nsp14A2-B228H228YCatTat11AY.940.000443
ORF1ab/nsp14A2-B228H228HcaTcaC11AY.980.000079
ORF1ab/nsp14A2-B228H228HcaTcaC11AY.99.20.000092
ORF1ab/nsp14A2-B228H228PcATcCC11B.10.000009
ORF1ab/nsp14A2-B228H228QcaTcaG11B.10.000009
ORF1ab/nsp14A2-B228H228LcAtcTt11B.10.000009
ORF1ab/nsp14A2-B228H228RcAtcGt11B.10.000009
ORF1ab/nsp14A2-B228H228PcAtcCt11B.1.1.1810.004545
ORF1ab/nsp14A2-B228H228RcAtcGt11B.1.1.2140.000055
ORF1ab/nsp14A2-B228H228YCatTat11B.1.1.280.000311
ORF1ab/nsp14A2-B228H228delCAT---11B.1.1.3110.000358
ORF1ab/nsp14A2-B228H228delCAT---11B.1.1.390.00051
ORF1ab/nsp14A2-B228H228HcaTcaC11B.1.1.3970.002252
ORF1ab/nsp14A2-B228H228HcaTcaC11B.1.1.440.00241
ORF1ab/nsp14A2-B228H228delCAT---11B.1.1.4480.002033
ORF1ab/nsp14A2-B228H228RcAtcGt11B.1.1.5190.00004
ORF1ab/nsp14A2-B228H228del1caTca-11B.1.1.70.000001
ORF1ab/nsp14A2-B228H228YCatTat11B.1.1110.001175
ORF1ab/nsp14A2-B228H228RcAtcGt11B.1.1600.000031
ORF1ab/nsp14A2-B228H228YCatTat11B.1.1770.000013
ORF1ab/nsp14A2-B228H228NCatAat11B.1.1770.000013
ORF1ab/nsp14A2-B228H228delCAT---11B.1.177.110.001698
ORF1ab/nsp14A2-B228H228LcAtcTt11B.1.177.170.000821
ORF1ab/nsp14A2-B228H228delCAT---11B.1.177.40.000211
ORF1ab/nsp14A2-B228H228delCAT---11B.1.177.540.000606
ORF1ab/nsp14A2-B228H228delCAT---11B.1.177.60.000977
ORF1ab/nsp14A2-B228H228HcaTcaC11B.1.177.620.001192
ORF1ab/nsp14A2-B228H228delCAT---11B.1.177.630.002703
ORF1ab/nsp14A2-B228H228PcAtcCt11B.1.177.70.000165
ORF1ab/nsp14A2-B228H228YCatTat11B.1.177.730.000566
ORF1ab/nsp14A2-B228H228delCAT---11B.1.177.830.001481
ORF1ab/nsp14A2-B228H228HcaTcaC11B.1.177.860.000183
ORF1ab/nsp14A2-B228H228delCAT---11B.1.177.90.001332
ORF1ab/nsp14A2-B228H228del1CaTGa-11B.1.20.000009
ORF1ab/nsp14A2-B228H228HcaTcaC11B.1.2210.000071
ORF1ab/nsp14A2-B228H228QcaTcaG11B.1.2340.000132
ORF1ab/nsp14A2-B228H228YCatTat11B.1.2340.000132
ORF1ab/nsp14A2-B228H228delCAT---11B.1.2420.018868
ORF1ab/nsp14A2-B228H228HcaTcaC11B.1.2790.000514
ORF1ab/nsp14A2-B228H228NCatAat11B.1.36.170.000494
ORF1ab/nsp14A2-B228H228delCAT---11B.1.36.170.000494
ORF1ab/nsp14A2-B228H228HcaTcaC11B.1.3690.000285
ORF1ab/nsp14A2-B228H228delCAT---11B.1.4150.014286
ORF1ab/nsp14A2-B228H228HcaTcaC11B.1.4270.00005
ORF1ab/nsp14A2-B228H228RcAtcGt11B.1.4290.000024
ORF1ab/nsp14A2-B228H228RcAtcGt11B.1.4700.001404
ORF1ab/nsp14A2-B228H228RcAtcGt11B.1.5260.000024
ORF1ab/nsp14A2-B228H228HcaTcaC11B.1.5640.000426
ORF1ab/nsp14A2-B228H228delCAT---11B.1.6210.000089
ORF1ab/nsp14A2-B228H228delCAT---11B.1.6300.005236
ORF1ab/nsp14A2-B228H228HcaTcaC11B.1.6310.003367
ORF1ab/nsp14A2-B228H228QcaTcaA11C.170.055556
ORF1ab/nsp14A2-B228H228delCAT---11C.360.000911
ORF1ab/nsp14A2-B228H228RcAtcGt11C.370.000116
ORF1ab/nsp14A2-B228H228RcAtcGt11P.10.000016
ORF1ab/nsp14A2-B228H228NCatAat11P.10.000016
ORF1ab/nsp14A2-B228H228HcaTcaC11P.1.100.000269
ORF1ab/nsp14A2-B228H228RcAtcGt11P.1.17.10.000875
ORF1ab/nsp14A2-B228H228HcaTcaC11Q.10.000126
ORF1ab/nsp14A2-B228H228RcAtcGt11Q.10.000126
ORF1ab/nsp14A2-B228H228delCAT---11Q.20.000613
ORF1ab/nsp14A2-B228H228YCatTat11Q.80.000165